BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0331.0007.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFH5.1 B3KFH5_9BACI Bifunctional deaminase-reductase domain pr... 298 2e-79 B3KI16.1 B3KI16_9BACI Bifunctional deaminase-reductase domain pr... 268 4e-70 C3MEZ2.1 C3MEZ2_RHISN Putative reductase protein 241 3e-62 A7HY23.1 A7HY23_PARL1 Bifunctional deaminase-reductase domain pr... 235 2e-60 B3PYH4.1 B3PYH4_RHIE6 Putative riboflavin biosynthesis reductase... 228 3e-58 >B3KFH5.1 B3KFH5_9BACI Bifunctional deaminase-reductase domain protein Length = 178 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 144/150 (96%), Positives = 146/150 (97%) Query: 1 MAKIVFALNQSLDGFVDHDHPAFQPDPVLFRHFIDDVRGLAGSLYGRRMYEIMRYWDGDH 60 MAKIVFALNQSLDGFVDHDH AFQPDPVLFRHFIDDVRGLAG LYGRRMYE MRYWDGDH Sbjct: 1 MAKIVFALNQSLDGFVDHDHMAFQPDPVLFRHFIDDVRGLAGILYGRRMYETMRYWDGDH 60 Query: 61 MEWDAPEREYAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRGLKAQHEGEIEVAGP 120 EWDAPEREYAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRGLKAQ+EG+IEVAGP Sbjct: 61 FEWDAPEREYAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRGLKAQYEGDIEVAGP 120 Query: 121 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF 150 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF Sbjct: 121 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF 150 >B3KI16.1 B3KI16_9BACI Bifunctional deaminase-reductase domain protein Length = 176 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 133/150 (88%), Positives = 136/150 (90%), Gaps = 2/150 (1%) Query: 1 MAKIVFALNQSLDGFVDHDHPAFQPDPVLFRHFIDDVRGLAGSLYGRRMYEIMRYWDGDH 60 MAKIV+ALNQSLDGFVDHDHP FQ P LFRHFIDDVR L+G LYGRRMYE MR WDG Sbjct: 1 MAKIVYALNQSLDGFVDHDHPEFQTGPELFRHFIDDVRSLSGILYGRRMYENMRVWDG-- 58 Query: 61 MEWDAPEREYAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRGLKAQHEGEIEVAGP 120 EW APERE+AAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIR LKAQHEG IEVAGP Sbjct: 59 TEWGAPEREFAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRELKAQHEGVIEVAGP 118 Query: 121 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF 150 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF Sbjct: 119 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF 148 >C3MEZ2.1 C3MEZ2_RHISN Putative reductase protein Length = 176 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/150 (78%), Positives = 131/150 (87%), Gaps = 2/150 (1%) Query: 1 MAKIVFALNQSLDGFVDHDHPAFQPDPVLFRHFIDDVRGLAGSLYGRRMYEIMRYWDGDH 60 MA++VFALNQSLDG+VDH AF P PVLFRHFIDDVR L GS+YGRRMYE+MRYWD DH Sbjct: 1 MARLVFALNQSLDGYVDH--MAFAPGPVLFRHFIDDVRSLTGSVYGRRMYEVMRYWDEDH 58 Query: 61 MEWDAPEREYAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRGLKAQHEGEIEVAGP 120 EWD ER+YAAAW+S+PKWVVSR+LKSVGPNA+L E D+ AAIRGLKAQ GEIEV+GP Sbjct: 59 PEWDEAERDYAAAWRSQPKWVVSRSLKSVGPNATLFEDDVEAAIRGLKAQLGGEIEVSGP 118 Query: 121 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF 150 ELA SLT+LGL+DEYRLYLHPVVLG GKP Sbjct: 119 ELAGSLTKLGLIDEYRLYLHPVVLGRGKPL 148 >A7HY23.1 A7HY23_PARL1 Bifunctional deaminase-reductase domain protein Length = 176 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 112/150 (74%), Positives = 127/150 (84%), Gaps = 2/150 (1%) Query: 1 MAKIVFALNQSLDGFVDHDHPAFQPDPVLFRHFIDDVRGLAGSLYGRRMYEIMRYWDGDH 60 MAKI F +NQSLDG+VDH F P P LFRHFI+ RGL GSLYGR++YEIMRYWD +H Sbjct: 1 MAKIFFGMNQSLDGYVDHM--GFAPGPRLFRHFIEQTRGLTGSLYGRQLYEIMRYWDEEH 58 Query: 61 MEWDAPEREYAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRGLKAQHEGEIEVAGP 120 EW APERE+AAAW+S PKWVVSRTLKSVGPNA+L+ G+LAAAIR LKA+ +GEIEV GP Sbjct: 59 PEWGAPEREFAAAWRSNPKWVVSRTLKSVGPNATLVAGELAAAIRKLKAEFDGEIEVGGP 118 Query: 121 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF 150 ELA SLTELGL+DEYR+YLHPVVLG G PF Sbjct: 119 ELARSLTELGLIDEYRIYLHPVVLGSGTPF 148 >B3PYH4.1 B3PYH4_RHIE6 Putative riboflavin biosynthesis reductase protein Length = 176 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 107/150 (71%), Positives = 129/150 (86%), Gaps = 2/150 (1%) Query: 1 MAKIVFALNQSLDGFVDHDHPAFQPDPVLFRHFIDDVRGLAGSLYGRRMYEIMRYWDGDH 60 MAK+VF +NQSLDG+VDH AF P P LFRHF++ R AGS+YGR+MYEIMRYWD DH Sbjct: 1 MAKLVFGMNQSLDGYVDH--MAFGPSPTLFRHFVESTRRQAGSVYGRQMYEIMRYWDDDH 58 Query: 61 MEWDAPEREYAAAWQSKPKWVVSRTLKSVGPNASLIEGDLAAAIRGLKAQHEGEIEVAGP 120 EW+A ER++AAAW+++PKWVVSR+LKSVGPNASL+EGDL +AIR LKA+ GEIE AGP Sbjct: 59 PEWNADERDFAAAWRNQPKWVVSRSLKSVGPNASLVEGDLESAIRKLKAEGHGEIEAAGP 118 Query: 121 ELAHSLTELGLVDEYRLYLHPVVLGHGKPF 150 +LA SLT+LGL+DEY +YLHPVVLGHGKP+ Sbjct: 119 DLARSLTDLGLIDEYIIYLHPVVLGHGKPY 148 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,385,750,398 Number of extensions: 57368513 Number of successful extensions: 148502 Number of sequences better than 1.0e-05: 228 Number of HSP's gapped: 148387 Number of HSP's successfully gapped: 228 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)