BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0331.0004.p (177 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DGA2.1 B1DGA2_9BACL Alkylhydroperoxidase like protein, AhpD fa... 290 4e-77 Q39BF1.1 Q39BF1_BURS3 Alkylhydroperoxidase AhpD core 264 3e-69 Q1MEB3.1 Q1MEB3_RHIL3 Putative uncharacterized protein 263 3e-69 Q6W2F3.1 Q6W2F3_RHISN Transposase 263 5e-69 B9B6H6.1 B9B6H6_9BURK Alkylhydroperoxidase AhpD core 261 1e-68 >B1DGA2.1 B1DGA2_9BACL Alkylhydroperoxidase like protein, AhpD family Length = 159 Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 135/159 (84%), Positives = 145/159 (91%) Query: 19 MAQRINYMQQSPEFSKKMMELSNAEKESSIEEKIRHLVHIRASQMNGCGFCLDMHVKEAK 78 M QR+NYMQQSPEF+KKMME S AEK SSIE KI HLVHIRASQMNGCGFCLDMHVKEAK Sbjct: 1 MTQRVNYMQQSPEFTKKMMEFSYAEKSSSIEAKIIHLVHIRASQMNGCGFCLDMHVKEAK 60 Query: 79 IHGESELRLYHISIWRESTLFSPRERAALAWTEVLTKLPEHGVSDDIYDRVRGQLSEKEI 138 IHGE ELRLYH++IWRESTLF RERAALAWTEVLTKLPEHGVSD+IY+RVR Q +EKEI Sbjct: 61 IHGERELRLYHLAIWRESTLFDARERAALAWTEVLTKLPEHGVSDEIYNRVREQFTEKEI 120 Query: 139 SDLTFSIMAINAWNRVNVAFKNVPGSADAAFGLTKAGLS 177 SDLT+SIMAINAWNR NVAF+ PGSADAAFGLTKAGL+ Sbjct: 121 SDLTYSIMAINAWNRANVAFRTEPGSADAAFGLTKAGLN 159 >Q39BF1.1 Q39BF1_BURS3 Alkylhydroperoxidase AhpD core Length = 159 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 136/159 (85%) Query: 19 MAQRINYMQQSPEFSKKMMELSNAEKESSIEEKIRHLVHIRASQMNGCGFCLDMHVKEAK 78 M QR+NYM QSPE K+ +ELSN + S+IEE IR LV RASQ+NGC FCLDMHVKEA+ Sbjct: 1 MTQRLNYMHQSPELFKQFLELSNLLRSSAIEESIRDLVSARASQLNGCAFCLDMHVKEAR 60 Query: 79 IHGESELRLYHISIWRESTLFSPRERAALAWTEVLTKLPEHGVSDDIYDRVRGQLSEKEI 138 +HGE ELRL+H++ WRESTLFSPRERAALAWTEVLTKLPEHGV DD+YDRVRGQLSEKE+ Sbjct: 61 LHGERELRLHHLATWRESTLFSPRERAALAWTEVLTKLPEHGVPDDVYDRVRGQLSEKEL 120 Query: 139 SDLTFSIMAINAWNRVNVAFKNVPGSADAAFGLTKAGLS 177 SDLTF +MAIN WNR NVAF+ VPGSAD A+GL KA L+ Sbjct: 121 SDLTFEVMAINGWNRANVAFRTVPGSADKAYGLDKANLA 159 >Q1MEB3.1 Q1MEB3_RHIL3 Putative uncharacterized protein Length = 159 Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 121/159 (76%), Positives = 137/159 (86%) Query: 19 MAQRINYMQQSPEFSKKMMELSNAEKESSIEEKIRHLVHIRASQMNGCGFCLDMHVKEAK 78 M QR+NY QQSPE KK ME S A K S I+EK++ LV IRASQ+NGCGFCLDMHVK+AK Sbjct: 1 MTQRLNYAQQSPELFKKFMEFSMALKSSVIDEKLQALVEIRASQINGCGFCLDMHVKQAK 60 Query: 79 IHGESELRLYHISIWRESTLFSPRERAALAWTEVLTKLPEHGVSDDIYDRVRGQLSEKEI 138 IHGE+ELRLYH++IWRES LF PRERAALAWTE LTKLPE G+ D+IY+RVRGQLSEKEI Sbjct: 61 IHGETELRLYHVAIWRESNLFIPRERAALAWTEALTKLPEGGIPDEIYERVRGQLSEKEI 120 Query: 139 SDLTFSIMAINAWNRVNVAFKNVPGSADAAFGLTKAGLS 177 SDLTF +MAINAWNRVNV FK VPG+AD A+GL KAGL+ Sbjct: 121 SDLTFVVMAINAWNRVNVGFKTVPGTADKAYGLDKAGLN 159 >Q6W2F3.1 Q6W2F3_RHISN Transposase Length = 159 Score = 263 bits (671), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 122/159 (76%), Positives = 138/159 (86%) Query: 19 MAQRINYMQQSPEFSKKMMELSNAEKESSIEEKIRHLVHIRASQMNGCGFCLDMHVKEAK 78 M QR+NY QQSPE KK+ +LS A K+S IE+KI LV IRASQ+NGCGFCLDMHVKEAK Sbjct: 1 MTQRLNYAQQSPELFKKLADLSMALKDSVIEQKIHDLVQIRASQINGCGFCLDMHVKEAK 60 Query: 79 IHGESELRLYHISIWRESTLFSPRERAALAWTEVLTKLPEHGVSDDIYDRVRGQLSEKEI 138 IHGESELRLYHI+IWRES LF PRERAALAWTE LT+LPE G+ D++Y+RVRGQLSEKEI Sbjct: 61 IHGESELRLYHIAIWRESNLFVPRERAALAWTEALTRLPEGGIPDELYERVRGQLSEKEI 120 Query: 139 SDLTFSIMAINAWNRVNVAFKNVPGSADAAFGLTKAGLS 177 SDLTFSIM INAWNR ++AFKNVPGSAD +GL KAGL+ Sbjct: 121 SDLTFSIMVINAWNRASIAFKNVPGSADKLYGLDKAGLN 159 >B9B6H6.1 B9B6H6_9BURK Alkylhydroperoxidase AhpD core Length = 159 Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 119/159 (74%), Positives = 136/159 (85%) Query: 19 MAQRINYMQQSPEFSKKMMELSNAEKESSIEEKIRHLVHIRASQMNGCGFCLDMHVKEAK 78 M QR+NY+QQSPE KK +ELSN + S+IEE IR LV IRASQMNGC FCLDMHVKEA+ Sbjct: 1 MTQRLNYVQQSPELFKKFIELSNLLRSSTIEESIRDLVSIRASQMNGCAFCLDMHVKEAR 60 Query: 79 IHGESELRLYHISIWRESTLFSPRERAALAWTEVLTKLPEHGVSDDIYDRVRGQLSEKEI 138 +HGE ELR++H++ WRESTLFSPRERAALAWTE LTKL EHGV DD+YDRVRGQLSEKE+ Sbjct: 61 LHGERELRVHHLATWRESTLFSPRERAALAWTEALTKLGEHGVPDDVYDRVRGQLSEKEL 120 Query: 139 SDLTFSIMAINAWNRVNVAFKNVPGSADAAFGLTKAGLS 177 SDLTF +MAIN WNR NVAF+ VPGS+D AFGL KA L+ Sbjct: 121 SDLTFEVMAINGWNRANVAFRTVPGSSDKAFGLDKANLA 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.130 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 971,378,261 Number of extensions: 34286309 Number of successful extensions: 93648 Number of sequences better than 1.0e-05: 687 Number of HSP's gapped: 93490 Number of HSP's successfully gapped: 687 Length of query: 177 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 50 Effective length of database: 1,864,227,298 Effective search space: 93211364900 Effective search space used: 93211364900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)