BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0023.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7H1.1 B3K7H1_9BACI Response regulator receiver 438 e-121 B1DEC0.1 B1DEC0_9BACL Two component transcriptional regulator, L... 412 e-113 A8W166.1 A8W166_9BACI Response regulator receiver protein 266 1e-69 C0Z730.1 C0Z730_BREBN Two-component response regulator 263 1e-68 A4ISW6.1 A4ISW6_GEOTN Two-component response regulator 259 2e-67 >B3K7H1.1 B3K7H1_9BACI Response regulator receiver Length = 240 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/240 (88%), Positives = 228/240 (95%) Query: 1 MENQSIGKSPIKVLLADDHQLFREGLKRILNMEEDIEVIGECGDGIQVLEFCNENKPDIV 60 ME+ + IKVLLADDHQLFREGLKRILNME+DI+VIGECGDGIQVLEFCNE KPDIV Sbjct: 1 MEHLEKENTIIKVLLADDHQLFREGLKRILNMEDDIDVIGECGDGIQVLEFCNEVKPDIV 60 Query: 61 LMDINMPIENGVEATQKLREMFPDVKVIILSIHDDESYVFETLRKGANGYLLKDMEAESL 120 LMDINMP ENGV+AT+KLREMFP++KVIILSIHDDESYVFETLRKGANGYLLKDMEAESL Sbjct: 61 LMDINMPTENGVQATEKLREMFPEIKVIILSIHDDESYVFETLRKGANGYLLKDMEAESL 120 Query: 121 INAIRSVCEGHAFIHPKVTGKLINQLRRMTYLNETGAIAETAVKEAGVKFVAGDNNPLTR 180 INAIRSV EG+AFIHPKVTGKLI+QLRRMTY+NE GA+AE+ +EAGVKFVAG+NNPLTR Sbjct: 121 INAIRSVHEGYAFIHPKVTGKLIHQLRRMTYVNEAGAMAESGSREAGVKFVAGENNPLTR 180 Query: 181 REAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGWVTL 240 REAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGWVTL Sbjct: 181 REAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGWVTL 240 >B1DEC0.1 B1DEC0_9BACL Two component transcriptional regulator, LuxR family Length = 242 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 202/234 (86%), Positives = 214/234 (91%), Gaps = 1/234 (0%) Query: 8 KSPIKVLLADDHQLFREGLKRILNMEEDIEVIGECGDGIQVLEFCNENKPDIVLMDINMP 67 K IKVLLADDHQLFREGLKRILNME+D+EVIGECGDGIQVLEFCN P+IVLMDINMP Sbjct: 9 KRKIKVLLADDHQLFREGLKRILNMEDDLEVIGECGDGIQVLEFCNHTIPEIVLMDINMP 68 Query: 68 IENGVEATQKLREMFPDVKVIILSIHDDESYVFETLRKGANGYLLKDMEAESLINAIRSV 127 IENGV T++L+ +FPDVKVIILSIHDDESYVFETLRKGA GYLLKDMEAESLINAIRSV Sbjct: 69 IENGVVTTERLKTIFPDVKVIILSIHDDESYVFETLRKGATGYLLKDMEAESLINAIRSV 128 Query: 128 CEGHAFIHPKVTGKLINQLRRMTYLNETGAIAETAVK-EAGVKFVAGDNNPLTRREAEVL 186 GHA+IHPKVTGKLINQLRRMTYL+E G I+ A E GVKFVAG++NPLTRREAEVL Sbjct: 129 VNGHAYIHPKVTGKLINQLRRMTYLDEMGVISGAAAGMEPGVKFVAGEDNPLTRREAEVL 188 Query: 187 RLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGWVTL 240 RLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVI SIKYGWVTL Sbjct: 189 RLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVIQSIKYGWVTL 242 >A8W166.1 A8W166_9BACI Response regulator receiver protein Length = 235 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 136/238 (57%), Positives = 178/238 (74%), Gaps = 6/238 (2%) Query: 1 MENQSIGKSPIKVLLADDHQLFREGLKRILNMEEDIEVIGECGDGIQVLEFCNENKPDIV 60 MENQ + + +++LL DDHQLFREG+KRIL ME +EV+ E DG V++ +NKPD+V Sbjct: 1 MENQ-VNQDTLRILLIDDHQLFREGVKRILTMEPGLEVVAEGNDGEDVVDLVRQNKPDVV 59 Query: 61 LMDINMPIENGVEATQKLREMFPDVKVIILSIHDDESYVFETLRKGANGYLLKDMEAESL 120 LMDINMP NGV+AT+ L + FP+V+V+ILSIHDDESYV L+ GA+GYLLK+M+ E+L Sbjct: 60 LMDINMPGMNGVDATKTLLKSFPNVRVLILSIHDDESYVTHVLKTGASGYLLKEMDTEAL 119 Query: 121 INAIRSVCEGHAFIHPKVTGKLINQLRRMTYLNETGAIAETAVKEAGVKFVAGDNNPLTR 180 I A++ V G ++IHPKVT LI + RR+ NETG E +E + + LTR Sbjct: 120 IEAVKVVGNGGSYIHPKVTHNLIKEYRRLA--NETGNNGEIGFREVEYRRPL---HLLTR 174 Query: 181 REAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGWV 238 RE EVL+LM +GKSN+ IGE L+ISEKTVKNHVS+ILQKM ++DRTQAV+++IK GWV Sbjct: 175 RECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKNGWV 232 >C0Z730.1 C0Z730_BREBN Two-component response regulator Length = 235 Score = 263 bits (671), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/233 (57%), Positives = 169/233 (72%), Gaps = 8/233 (3%) Query: 11 IKVLLADDHQLFREGLKRILNMEEDIEVIGECGDGIQVLEFCNENKPDIVLMDINMPIEN 70 +++++ DDHQLFREG+KRIL MEED +V+GE DG + E+KPD++LMDINMP N Sbjct: 8 LRIVIVDDHQLFREGVKRILEMEEDFKVVGEGADGGEATVLAEEHKPDVLLMDINMPNIN 67 Query: 71 GVEATQKLREMFPDVKVIILSIHDDESYVFETLRKGANGYLLKDMEAESLINAIRSVCEG 130 GV A + + + P +VI+LSIHDDE YV+ TLR GA+GYLLK+M L++A+R V G Sbjct: 68 GVSAAENVISVSPSTRVIMLSIHDDEGYVYRTLRAGASGYLLKEMGTSDLVDAVRVVASG 127 Query: 131 HAFIHPKVTGKLINQLRRMTYLNETGAIAETAVKEAGV---KFVAGDNNPLTRREAEVLR 187 A+IHPKVTGKLI + RR++ E A +V E+ K + LTRRE EVL+ Sbjct: 128 GAYIHPKVTGKLIEEFRRLSE-QEGTAERSFSVDESQAIDPKVI----ESLTRREREVLQ 182 Query: 188 LMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGWVTL 240 LMAEGKSN+ IGE+LFISEKTVKNHVSSILQK+ V DRTQAV+ SIK GWV L Sbjct: 183 LMAEGKSNRAIGEFLFISEKTVKNHVSSILQKLNVQDRTQAVVISIKNGWVKL 235 >A4ISW6.1 A4ISW6_GEOTN Two-component response regulator Length = 225 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 126/227 (55%), Positives = 167/227 (73%), Gaps = 8/227 (3%) Query: 12 KVLLADDHQLFREGLKRILNMEEDIEVIGECGDGIQVLEFCNENKPDIVLMDINMPIENG 71 ++ + DDHQLFREG+KRIL + D EV+ E DG + L E++PD+VLMDINMP NG Sbjct: 4 RIAIIDDHQLFREGIKRILEFDGDFEVVAEGSDGREALSIVEEHRPDLVLMDINMPDTNG 63 Query: 72 VEATQKLREMFPDVKVIILSIHDDESYVFETLRKGANGYLLKDMEAESLINAIRSVCEGH 131 VEAT++L E +PD KV++LSIHDDE+YV L+ GA GYLLK+M+A++LI A+R V EG Sbjct: 64 VEATKQLIETYPDTKVVVLSIHDDENYVMRALQTGATGYLLKEMDADTLIEAVRIVAEGG 123 Query: 132 AFIHPKVTGKLINQLRRMTYLNETGAIAETAVKEAGVKFVAGDNNPLTRREAEVLRLMAE 191 +++HPKVT LI + RR+T + + + V+ + LTRRE EVL+L+A+ Sbjct: 124 SYLHPKVTHNLIREYRRLTTETNSNVMVQQEVRRPL--------HLLTRRECEVLQLLAD 175 Query: 192 GKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGWV 238 GKSN+ IGE L+ISEKTVKNHVSSILQK+ V+DRTQAV+ +IK GWV Sbjct: 176 GKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNGWV 222 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,308,113,235 Number of extensions: 51477414 Number of successful extensions: 233853 Number of sequences better than 1.0e-05: 13742 Number of HSP's gapped: 236564 Number of HSP's successfully gapped: 13911 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)