BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0327.0018.p
         (89 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7H5.1 B3K7H5_9BACI Small acid-soluble spore protein alpha/bet...   107   2e-22
B1DEC6.1 B1DEC6_9BACL Small acid-soluble spore protein alpha/bet...    88   3e-16
Q5WEC7.1 Q5WEC7_BACSK Small acid-soluble spore protein                 59   1e-07
Q5KW57.1 Q5KW57_GEOKA Small acid-soluble spore protein (Major al...    58   3e-07
C3IXL5.1 C3IXL5_9BACI Small acid-soluble spore protein alpha/bet...    58   3e-07

>B3K7H5.1 B3K7H5_9BACI Small acid-soluble spore protein alpha/beta type
          Length = 95

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 70/94 (74%), Gaps = 8/94 (8%)

Query: 1  MARN--NRTVVPESRAMLKQMQYEIASEFGL---YGAS-YGGGADTEFASELGVTGSSIG 54
          MAR+  NR VVPESR MLKQM+YEIA+EFGL   YG+S YG  ADTEF SELG  G    
Sbjct: 1  MARSSRNRQVVPESREMLKQMKYEIAAEFGLPVGYGSSSYG--ADTEFGSELGAIGGGSS 58

Query: 55 YGTPYLGHLTSRDNGSVGGEITKRLVKQAEQSLF 88
                GHLTSR+NGSVGGEITKRLV+ AEQSLF
Sbjct: 59 SRRAGWGHLTSRENGSVGGEITKRLVQNAEQSLF 92


>B1DEC6.1 B1DEC6_9BACL Small acid-soluble spore protein alpha/beta type
          Length = 89

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 65/90 (72%), Gaps = 8/90 (8%)

Query: 1  MARNNRTVVPESRAMLKQMQYEIASEFGLYGASYG--GGADTEFASELGVTGSSIGYGTP 58
          M+R+N+ VVP+ +A L QM+YEIA+E GL+ AS+G   GADTEFA ELG    S+G GT 
Sbjct: 1  MSRSNKVVVPDCKAALNQMKYEIAAELGLF-ASHGVSTGADTEFAGELG----SVGGGTH 55

Query: 59 Y-LGHLTSRDNGSVGGEITKRLVKQAEQSL 87
               +TSRD GS+GG IT+RLV QAE+ L
Sbjct: 56 IQWREVTSRDVGSIGGSITQRLVAQAEKVL 85


>Q5WEC7.1 Q5WEC7_BACSK Small acid-soluble spore protein
          Length = 66

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 43/83 (51%), Gaps = 28/83 (33%)

Query: 5  NRTVVPESRAMLKQMQYEIASEFGLYGASYGGGADTEFASELGVTGSSIGYGTPYLGHLT 64
          N  VVP  +  L QM+YEIASEFG+       GADT                       T
Sbjct: 7  NNLVVPGVQQALDQMKYEIASEFGV-----NLGADT-----------------------T 38

Query: 65 SRDNGSVGGEITKRLVKQAEQSL 87
          SR NGSVGGEITKRLV QAEQ L
Sbjct: 39 SRANGSVGGEITKRLVAQAEQQL 61


>Q5KW57.1 Q5KW57_GEOKA Small acid-soluble spore protein (Major alpha-type
          SASP)
          Length = 67

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 48/89 (53%), Gaps = 30/89 (33%)

Query: 1  MARNN--RTVVPESRAMLKQMQYEIASEFGLYGASYGGGADTEFASELGVTGSSIGYGTP 58
          MARNN  + +VP ++  L+QM+YEIA EFG+       GADT                  
Sbjct: 1  MARNNSNQLLVPGAQQALEQMKYEIAQEFGV-----NLGADT------------------ 37

Query: 59 YLGHLTSRDNGSVGGEITKRLVKQAEQSL 87
               TSR NGSVGGEITKRLV  A+Q L
Sbjct: 38 -----TSRANGSVGGEITKRLVAMAQQQL 61


>C3IXL5.1 C3IXL5_9BACI Small acid-soluble spore protein alpha/beta type
          Length = 67

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 48/89 (53%), Gaps = 30/89 (33%)

Query: 1  MARNN--RTVVPESRAMLKQMQYEIASEFGLYGASYGGGADTEFASELGVTGSSIGYGTP 58
          MARNN  + +VP ++  L+QM+YEIA EFG+       GADT                  
Sbjct: 1  MARNNSNQLLVPGAQQALEQMKYEIAQEFGV-----NLGADT------------------ 37

Query: 59 YLGHLTSRDNGSVGGEITKRLVKQAEQSL 87
               TSR NGSVGGEITKRLV  A+Q L
Sbjct: 38 -----TSRANGSVGGEITKRLVAMAQQQL 61


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 529,031,278
Number of extensions: 20121291
Number of successful extensions: 49760
Number of sequences better than 1.0e-05: 113
Number of HSP's gapped: 49764
Number of HSP's successfully gapped: 113
Length of query: 89
Length of database: 3,060,696,203
Length adjustment: 59
Effective length of query: 30
Effective length of database: 2,504,856,318
Effective search space: 75145689540
Effective search space used: 75145689540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)