BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0327.0017.p
         (87 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7H6.1 B3K7H6_9BACI Conserved hypothetical membrane protein         123   4e-27
B1DEC7.1 B1DEC7_9BACL Putative uncharacterized protein                 87   4e-16
C1TJE5.1 C1TJE5_9FIRM Putative uncharacterized protein (Fragment)      75   3e-12
A5CYH5.1 A5CYH5_PELTS Hypothetical membrane protein                    72   1e-11
A9U6I5.1 A9U6I5_PHYPA Predicted protein                                70   6e-11

>B3K7H6.1 B3K7H6_9BACI Conserved hypothetical membrane protein
          Length = 166

 Score =  123 bits (309), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 71/85 (83%)

Query: 3   VDVKPGQTLFGSAGAEFIVRAGKAVIFSEAANGVADLTDGKDLADGQAAPMNHLLSFPRD 62
           V +KPG+ L   AG EFIVR+G AVI++E A+GVADLTDGKDL +G+ AP NHLLSFPR+
Sbjct: 82  VALKPGKILIADAGTEFIVRSGNAVIYTEVASGVADLTDGKDLLNGETAPKNHLLSFPRE 141

Query: 63  GRGIKVQDGQTLRLVVMVRGRYTLK 87
           GRGI+V++GQT  L+VMVRG YT+K
Sbjct: 142 GRGIQVKEGQTSNLIVMVRGGYTIK 166


>B1DEC7.1 B1DEC7_9BACL Putative uncharacterized protein
          Length = 166

 Score = 87.0 bits (214), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 56/86 (65%)

Query: 2   IVDVKPGQTLFGSAGAEFIVRAGKAVIFSEAANGVADLTDGKDLADGQAAPMNHLLSFPR 61
           +V V  G+ L  + G E +VR+GKA+++S  ANG+ADLTDGKDL +G++   NH + FPR
Sbjct: 81  VVSVPNGKILIANEGTEVVVRSGKAIVYSTDANGIADLTDGKDLTNGKSITANHHILFPR 140

Query: 62  DGRGIKVQDGQTLRLVVMVRGRYTLK 87
            GRGI         L V+VRG Y ++
Sbjct: 141 AGRGITTDPSYKGSLTVLVRGSYVIQ 166


>C1TJE5.1 C1TJE5_9FIRM Putative uncharacterized protein (Fragment)
          Length = 115

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 50/84 (59%), Gaps = 5/84 (5%)

Query: 5   VKPGQTLFGSAGAEFIVRAGKAVIFSEAANGVADLTDGKDLADGQAAPMNHLLSFPR-DG 63
           + PGQ     AGAEFIVR+GKAV      +G+ DLTDG ++  GQA P NHL   PR DG
Sbjct: 36  LTPGQVFSCDAGAEFIVRSGKAVTVDSTGSGIPDLTDGTNILSGQAVPKNHLCIVPRSDG 95

Query: 64  RGIKVQDGQTLRLVVMVRGRYTLK 87
           RG+K  D     + VM +G   +K
Sbjct: 96  RGVKAVD----TVWVMHKGSVNVK 115


>A5CYH5.1 A5CYH5_PELTS Hypothetical membrane protein
          Length = 136

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 2   IVDVKPGQTLFGSAGAEFIVRAGKAVIFSEAANGVADLTDGKDLADGQAAPMNHLLSFPR 61
           + ++K GQ L G AG E IVR G+A +     NG+ DLT G D+  G   P+NHLL  PR
Sbjct: 54  VAELKSGQVLKGGAGTEIIVRRGQAAVVDSTGNGIPDLTAGADIYGGSTVPVNHLLLVPR 113

Query: 62  -DGRGIKVQDGQTLRLVVMVRGRYTLK 87
            DGRG+K        +VVM RG  T++
Sbjct: 114 EDGRGVKALS----PVVVMYRGEATIR 136


>A9U6I5.1 A9U6I5_PHYPA Predicted protein
          Length = 937

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 52/89 (58%), Gaps = 2/89 (2%)

Query: 1   VIVDVKPGQTLFGSAGAEFIVRAGKA-VIFSEAANGVADLTDGKDLADGQAAPMNHLLSF 59
            +V+V PGQTL+G  G EFIVR GK   +     +G+ DLT G DL  G     NHLL  
Sbjct: 849 TVVEVNPGQTLYGFEGTEFIVRTGKVQAVAGNNGDGLTDLTAGVDLRGGAVVGTNHLLLI 908

Query: 60  PR-DGRGIKVQDGQTLRLVVMVRGRYTLK 87
            R D RG+++  G      VMVRG+YTL+
Sbjct: 909 ARSDNRGLRLAPGYDGISHVMVRGKYTLR 937


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 492,056,803
Number of extensions: 16831884
Number of successful extensions: 36241
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 36236
Number of HSP's successfully gapped: 13
Length of query: 87
Length of database: 3,060,696,203
Length adjustment: 57
Effective length of query: 30
Effective length of database: 2,523,698,348
Effective search space: 75710950440
Effective search space used: 75710950440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)