BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0015.p (908 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7H7.1 B3K7H7_9BACI S-layer domain protein 246 7e-63 B7GM85.1 B7GM85_ANOFW S-layer glycoprotein protein, contains thr... 238 3e-60 C1JZ07.1 C1JZ07_PAEAL Surface (S-) layer glycoprotein 220 5e-55 Q5KV15.1 Q5KV15_GEOKA Surface layer (S-layer) glycoprotein 186 1e-44 B5LWQ5.1 B5LWQ5_BACST SgsG 181 3e-43 >B3K7H7.1 B3K7H7_9BACI S-layer domain protein Length = 986 Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 140/288 (48%), Positives = 174/288 (60%), Gaps = 6/288 (2%) Query: 3 VQGGEKKVMKKILSVXXXXXXXXXXXXXXXXGETATTPQAKFDALAAKGILNGYPDGQAH 62 +QGGEKKVMKKILSV G+ A Q KFD L KGI GYPDG A Sbjct: 16 IQGGEKKVMKKILSVALSTAMAFSMFASVAFGDDALNTQQKFDVLKEKGIFTGYPDGTAG 75 Query: 63 LEKDLTRAEFAKIVTKLFGLTEVTGKLSYKDKGYTASNWAVPYIEAVTAAGYMQGQDTVK 122 L+K++TRAEFAK++ + GL + GK S+KDK Y A W PY+EAV AAG M+G++T K Sbjct: 76 LDKEMTRAEFAKVLVGIMGLEPIEGKASFKDKNYKADKWPAPYVEAVYAAGLMEGKNTTK 135 Query: 123 GIFNYNGKVTVQEVAAVLFRALKLEQPSTTDNSASAWAKGYAQAVINAGLVAQTTNFKAN 182 IF++NGK+TVQE+A VL A KLE P+ T+N+AS WAKGY QA INAGLV N KAN Sbjct: 136 MIFDFNGKITVQEMAKVLVTAQKLEIPTETNNNASDWAKGYVQAAINAGLVDAKANPKAN 195 Query: 183 ATRSLVVETAYAVDQKTVAPTLTVASAEAVSPTKVV-VTFSDKTTANVDLTTALVAGVET 241 A+RS +V+ AY++ P V S E KVV ++ V L TAL A T Sbjct: 196 ASRSQLVDVAYSIYLAQQKP--AVVSYEVKEDGKVVEFKLANNEVVKVTLETALKANTAT 253 Query: 242 TINFKHLEKDYTAKVTL---QAPKVVSVTAPNSKQVVVKFNRAIDPDT 286 + F H DYT VT A K+ SVTA N K+V VKF+ ++ T Sbjct: 254 EVKFSHNSYDYTESVTWVVTAATKIDSVTATNYKEVTVKFDGEVEAKT 301 >B7GM85.1 B7GM85_ANOFW S-layer glycoprotein protein, contains three N-terminal SLH domains Length = 1008 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 268/907 (29%), Positives = 397/907 (43%), Gaps = 124/907 (13%) Query: 47 LAAKGILNGYPDGQAHLEKDLTRAEFAKIVTKLFGLTEVTGKLSYKDKGYTASNWAVPYI 106 L AKG + GY DG K LTR E A I +++ KD G T P + Sbjct: 50 LVAKGYIKGYADGTFKPNKSLTRGEAAIIFSRIL-----------KDAGVTQKGAGFPDV 98 Query: 107 EA-----------VTAAGYMQGQDTVKGIFNYNGKVTVQEVAAVLFRALKLEQPS----- 150 A V AAG M G + KG FN N +T +++A V+ A KL +P+ Sbjct: 99 PAEKAELAEAVAIVQAAGIMTGDE--KGNFNPNANITREQMAKVVVEAFKLTKPAGHTTK 156 Query: 151 TTD-NSASAWAKGYAQAVINAGLVAQTTNF--KANATR----SLVVE------------- 190 TD + A AWA+ Y Q + A V + T F K N TR S VV Sbjct: 157 VTDLDKAGAWARDYIQT-LEANGVTKNTEFMPKQNVTRGQFASFVVRAMGVTKEVSAADI 215 Query: 191 -TAYAVDQKTVAPT--------------LTVASAEAVSPTKVVVTFSDKTTANVDLTTAL 235 + VD+KT+ T + E+VS + T + TAL Sbjct: 216 TSVKLVDEKTLEVTFNGELKEVKKEDFAIQGVEIESVSIKAAAAAEAKTTVVVIKTKTAL 275 Query: 236 VAGVETTINFKHLEKDYT-AKVTLQAPKVVSVTAPNSKQVVVKFNRAIDPDTLVETNTLI 294 G +++K D V + PKV SV+A N+KQ+ VKFN+A+ DT TN Sbjct: 276 EEGKAYNVSYKGQTTDKAKVDVPVVTPKVESVSAINAKQIEVKFNKAV--DTSTATNKSN 333 Query: 295 XXXXXXXXXXXXXXXXXXXXXXXXXXXTQATISLDGNTFLKGNYTVV-------VNDTIK 347 T+++ + + + V + + +K Sbjct: 334 YKIQRNADPSASTLATLDAGATVSVSEDGKTVTITTTSGVNTQFGVTAGTPFKFIVENVK 393 Query: 348 TTAGEAIPAFTQLLPXXXXXXXXXXXXXXXXXXXXNKVYVKLSEPVKTAGLIAYVNGASA 407 G+++ ++T L +V + SEPV+T+G IAYV G +A Sbjct: 394 DKTGKSVESYTTNLVVNDTVAPTLKEVKATAKTTTTRVTLVFSEPVQTSGAIAYVGGQAA 453 Query: 408 SVSRDTYQPLDEVXXXXXXXXXXXXYDVSLTNLSDYAGNLATPNPXXXXXXXXSDVQAPV 467 SV + P + V YD++L N DYA N NP DV AP Sbjct: 454 SVQAGS-SPNEVVLTTAQTLEAGKTYDLTLLNFKDYANNFLQQNPTTTSFTVVGDVVAPT 512 Query: 468 VQKVTAIGDKTVEVVFNKAVDYNSLVGNVRLLDANGESK--GV-FTVNTTSDTKTFKLTS 524 VQ V + D +EV F+KA+D ++ G+ R+LD NG + G+ TV + KT +L + Sbjct: 513 VQDVKVVRDNLIEVTFDKAMDVSTFAGHARVLDLNGIQRDGGITATVKPGTSGKTIRL-A 571 Query: 525 PLGSLP--STGTFSGSIVFGATVRDTIGNNLGTAVTQPITFNKDTVAPTVTSITYKSGSG 582 ++P GTF+G++V G ++D G N A + +T KDTV PT+ TY G Sbjct: 572 LTATVPFNENGTFAGTLVLGDGIKDVNG-NAKVATSHSVTIAKDTVRPTIVGTTYVPAGG 630 Query: 583 -----------LVVKFSEEVNAVSGVSGLTLIKDSTGV---GTALSSTPVAKSKDGKSL- 627 +VVKFSEEVN V+ S + LI S GV + +SS V S + + Sbjct: 631 QYAGNTYANGAVVVKFSEEVN-VATSSDIKLIT-SNGVDVSASVISSHAVNGSDSTEVIV 688 Query: 628 TFATPGGVVGAHTLRLPEGLVVDASFAKNKLXXXXXXXXXXXXSSDSERPKVT----SIV 683 T +TP G +TLR+ +V D S N+ SSD+ +P V +V Sbjct: 689 TLSTPLN-TGTYTLRIGNDVVQDLSTQSNR-NVAAVTTVNVGASSDTTKPAVNVSSPVVV 746 Query: 684 YGGENTNDYIVKVTVTDNAGISVASLTDNNSYTMDSKALPTGSFVTLESAA---DNATTR 740 T+ + +TDN G+ +A++ + N+Y +D K LP+GS+VT+ A D+A T Sbjct: 747 AATNQTSGTTISFVMTDNIGLDLATVQNVNNYLLDGKPLPSGSYVTIAHGAGSTDSAATN 806 Query: 741 VAI-INIPKSSISETKDYKFLANGVADTAGNGAEAHNEVAIRLLDKVAPKLNXXXXXXXX 799 + + +NIP SI++ Y N + D AGN A+ ++ L D V+P+L Sbjct: 807 ITVTLNIPAKSITKDATYALNINNIKDKAGNIADPQ-VASVTLNDDVSPELK--TATISS 863 Query: 800 XXXLIVTFSENVKDIQT---DDLQFRINDKLVSPLTFDKV-----GNSTD--KWYVTFNK 849 L++ F+E V ++ D QF IN V+ + + G TD K+ VTFN Sbjct: 864 NGLLVLGFTEAVSNVGAGTLSDFQFTINGTDVAVVNNGNIVAFANGTGTDAGKYVVTFNA 923 Query: 850 KDIDASA 856 K +DA A Sbjct: 924 K-VDAGA 929 >C1JZ07.1 C1JZ07_PAEAL Surface (S-) layer glycoprotein Length = 983 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 124/259 (47%), Positives = 161/259 (62%), Gaps = 11/259 (4%) Query: 34 GETATTPQAKFDALAAKGILNGYPDG-QAHLEKDLTRAEFAKIVTKLFGLTEVTGKLSYK 92 + A T Q KFDAL G+ +GYP A L +D+TRAEFAK++ KLFGL E+ G+ SYK Sbjct: 25 ADAAKTTQEKFDALKEAGVFSGYPGTTDAKLGQDMTRAEFAKVLVKLFGLKEIHGQYSYK 84 Query: 93 DKGYTASNWAVPYIEAVTAAGYMQGQDTVKGIFNYNGKVTVQEVAAVLFRALKLEQPSTT 152 DK Y A NWA P+IEAVTA G MQG+D K IF++NGK+TV+E + L ALKLE Sbjct: 85 DKNYDAKNWAAPFIEAVTAEGLMQGKDLTKKIFDFNGKITVEEASKTLVTALKLEPVKDA 144 Query: 153 DNSASAWAKGYAQAVINAGLVAQTTNFKANATRSLVVETAYAVDQKTVAPTLTVASAEAV 212 N A+ WAKGY +A +NAGL ++ N KANATR+ +VE A+A D+ + P +T S + + Sbjct: 145 QNKATDWAKGYFEAAVNAGLFSKDANPKANATRAQLVEAAFAADEMSKGPKVT--SYKVI 202 Query: 213 SPTKVVVTFSDKTTANVDLTTALVAGVETTINFKHLEKD-----YTAKVTL---QAPKVV 264 V T SDK V L AL ET + F + K+ T KVT A K+ Sbjct: 203 DSKTVEFTMSDKEVQKVTLDKALEPNKETEVTFTYKNKEGKEFKITTKVTYTITAAQKIE 262 Query: 265 SVTAPNSKQVVVKFNRAID 283 SVTA N K+VVVKF+ ++D Sbjct: 263 SVTAENLKEVVVKFDGSLD 281 >Q5KV15.1 Q5KV15_GEOKA Surface layer (S-layer) glycoprotein Length = 969 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 196/661 (29%), Positives = 289/661 (43%), Gaps = 69/661 (10%) Query: 262 KVVSVTAPNSKQVVVKFNRAIDPDTLVETNTLIXXXXXXXXXXXXXXXXXXXXXXXXXXX 321 KV SV N+KQ+ +KFN+A+D T N Sbjct: 263 KVESVAVVNAKQIEIKFNKAVDRSTASNKNNYKIQKSSDSSASTLATLDGSADISWSDDG 322 Query: 322 TQATISLDGNTFLKGNYTVVVNDT--------IKTTAGEAIPAFTQLLPXXXXXXXXXXX 373 TI+ N VVND IK G+ + +++ L Sbjct: 323 KTVTITTTSGII---NKFGVVNDAPFKFIVENIKDKYGKTVDSYSTNLVVKDTVAPTLKE 379 Query: 374 XXXXXXXXXNKVYVKLSEPVKTAGLIAYVNGASASVSRDTYQPLDEVXXXXXXXXXXXXY 433 KV + SEPV+ +G IAYV G +ASV +D P + + Y Sbjct: 380 VKATAKSTTTKVTLVFSEPVQASGAIAYVGGQAASV-QDGSNPNEIILTTAQALEAGKTY 438 Query: 434 DVSLTNLSDYAGNLATPNPXXXXXXXXSDVQAPVVQKVTAIGDKTVEVVFNKAVDYNSLV 493 D++L N DYA N PNP SD AP VQ V + D +EV F+KA+D ++ Sbjct: 439 DLTLLNFKDYANNFLQPNPTTKSFTVSSDAVAPTVQDVKVVRDNLIEVTFDKAMDASTFA 498 Query: 494 GNVRLLDANGESKG---VFTVNTTSDTKTFKLTSPLGS---LPSTGTFSGSIVFGATVRD 547 G R+LD NG +G T+ + + KT +L LGS +G FSG++V G ++D Sbjct: 499 GYTRVLDLNGNPQGGTITATIKSGTAGKTVRL--ALGSAVPFNDSGVFSGTLVLGNGIKD 556 Query: 548 TIGNNLGTAVTQPITFNKDTVAPTVTSITYKSGSG-----------LVVKFSEEVNAVSG 596 G N +A T IT KDT PTV +Y + G +V+KF+E+V + Sbjct: 557 VNG-NAKSATTHSITLTKDTARPTVAGASYVAAGGQYAGNTYANGAIVLKFNEDVAKIG- 614 Query: 597 VSGLTLI-KDSTGVGTALSSTPVAKSKDGKSLTFATPGGVV--GAHTLRLPEGLVVDASF 653 S LI V + L++ VA + D + + G +TLR+ +V D S Sbjct: 615 -SDFRLITAGGEDVTSRLNAGGVAVNNDNNTEVIIPLNSSLSAGTYTLRVGNDVVQDLST 673 Query: 654 AKNKLXXXXXXXXXXXXSSDSERPKV----TSIVYGGENTNDYIVKVTVTDNAGISVASL 709 N+ SSDS +P V S V T+ + +T+TDN G+ +A++ Sbjct: 674 QANR-NAAAVTTVTVGASSDSSKPVVNEGSVSAVAATSQTSGTTISLTMTDNVGLDLATV 732 Query: 710 TDNNSYTMDSKALPTGSFVTL----ESAADNATTRVAIINIPKSSISETKDYKFLANGVA 765 D N+Y ++ K LP+GS+VT+ S++ AT +NIP SI++ Y N + Sbjct: 733 QDVNNYLLNGKPLPSGSYVTIAHGSGSSSSAATNITVTLNIPAKSITKDGQYALNINNIK 792 Query: 766 DTAGNGAEAHNEVA-IRLLDKVAPKLNXXXXXXXXXXXLIVTFSENVKDIQT---DDLQF 821 D AGN A+ +VA +RL D V+P+L L++ FSE+V + D QF Sbjct: 793 DKAGNIADP--KVANVRLNDDVSPELK--TATISSNGLLVLGFSESVNSVGATTPSDFQF 848 Query: 822 RINDKLVSP------LTF-DKVGNSTDKWYVTFNKK-----DIDASASAGAQ---DLNAN 866 +N V+ + F D G K+ VTF K D + S +A + D+N N Sbjct: 849 VVNGVEVATTSNGNIVQFNDGTGTDAGKYVVTFKAKVDQGADNNVSTTADNRLYLDVNGN 908 Query: 867 N 867 N Sbjct: 909 N 909 >B5LWQ5.1 B5LWQ5_BACST SgsG Length = 969 Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 166/510 (32%), Positives = 247/510 (48%), Gaps = 58/510 (11%) Query: 384 KVYVKLSEPVKTAGLIAYVNGASASVSRDTYQP---LDEVXXXXXXXXXX-XXYDVSLTN 439 +V + SEPV+T G IAYV G +ASV QP ++EV YD++L N Sbjct: 390 RVTLVFSEPVQTNGAIAYVGGQAASV-----QPGSNVNEVILTTAQALEAGKTYDLTLLN 444 Query: 440 LSDYAGNLATPNPXXXXXXXXSDVQAPVVQKVTAIGDKTVEVVFNKAVDYNSLVGNVRLL 499 DYA N PNP SD AP VQ V + D +EV F+KA+D ++ G R+L Sbjct: 445 FKDYANNFLQPNPTTKSFTVSSDAVAPTVQDVKVVRDNLIEVTFDKAMDASTFAGYTRVL 504 Query: 500 DANGESK-GVFTVNTTSDT--KTFKLTSPLGS---LPSTGTFSGSIVFGATVRDTIGNNL 553 D NG + GV T S T KT +L LGS +G FSG++V G ++D G N Sbjct: 505 DLNGNPQGGVITATIKSGTAGKTVRL--ALGSAVPFNDSGVFSGTLVLGNGIKDVNG-NA 561 Query: 554 GTAVTQPITFNKDTVAPTVTSITYKSGSG-----------LVVKFSEEVNAVSGVSGLTL 602 +A T IT KDT PTV +Y + G +V+KF+E+V + S L Sbjct: 562 KSATTHSITLTKDTARPTVAGASYVAAGGQYAGNTYTNGAIVLKFNEDVAKIG--SDFRL 619 Query: 603 I-KDSTGVGTALSSTPVAKSKDGKSLTFATPGGVV--GAHTLRLPEGLVVDASFAKNKLX 659 I V + L+++ A + D + + G +TLR+ +V D S +N+ Sbjct: 620 ITAGGEDVTSRLNASSAAVNNDDNTEVIIPLSSTLSAGTYTLRVGNDVVKDLSTQENR-N 678 Query: 660 XXXXXXXXXXXSSDSERPKV----TSIVYGGENTNDYIVKVTVTDNAGISVASLTDNNSY 715 SSDS +P V S V T+ + +++TDN G+ +A++ D N+Y Sbjct: 679 AAAVTTVTVGASSDSSKPVVNEGSVSAVAATNQTSGTTISLSMTDNVGLDLATVQDVNNY 738 Query: 716 TMDSKALPTGSFVTLESA---ADNATTRVAI-INIPKSSISETKDYKFLANGVADTAGNG 771 ++ K LP+GS+VT++ A + +A T + + +NIP SI++ Y N + D AGN Sbjct: 739 LLNGKPLPSGSYVTIQHANGSSSSAATNITVTLNIPAKSITKDGQYALNINNIKDKAGNI 798 Query: 772 AEAHNEVA-IRLLDKVAPKLNXXXXXXXXXXXLIVTFSENVKDIQTD---DLQFRINDKL 827 A+ +VA + L D V+P+L L++ FSE+V + + D QF +N Sbjct: 799 ADP--KVANVNLKDDVSPELK--TATISSNGLLVLGFSESVNSVGANTPSDFQFVVNGVE 854 Query: 828 VSP------LTF-DKVGNSTDKWYVTFNKK 850 V+ + F D G K+ VTF K Sbjct: 855 VATTSNGHIVQFNDGTGTDAGKYVVTFKAK 884 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.126 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,392,584,454 Number of extensions: 162619510 Number of successful extensions: 365169 Number of sequences better than 1.0e-05: 293 Number of HSP's gapped: 365220 Number of HSP's successfully gapped: 305 Length of query: 908 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 763 Effective length of database: 1,694,649,028 Effective search space: 1293017208364 Effective search space used: 1293017208364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 136 (57.0 bits)