BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0011.p (251 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7I1.1 B3K7I1_9BACI Glycosyl transferase, WecB/TagA/CpsF famil... 345 3e-93 B1DED3.1 B1DED3_9BACL Glycosyl transferase, WecB/TagA/CpsF famil... 310 6e-83 C0Z749.1 C0Z749_BREBN Probable teichoic acid biosynthesis protei... 232 3e-59 A4J962.1 A4J962_DESRM N-acetylmannosaminyltransferase EC=2.4.1.187 228 4e-58 Q9JRP3.1 Q9JRP3_THETY Putative uncharacterized protein lta1 212 2e-53 >B3K7I1.1 B3K7I1_9BACI Glycosyl transferase, WecB/TagA/CpsF family EC=2.4.1.187 Length = 252 Score = 345 bits (884), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 161/244 (65%), Positives = 192/244 (78%) Query: 7 IPTVPIFGIRVSRVDMKATVSYLTEAVQRREPHQVITANPIMVMTALDNPAYMEIMKSAE 66 PTV +F I S++ MK TV YLTEAVQ +PH VITANPIMVMTA++NP Y +M+ AE Sbjct: 7 FPTVSVFDIPFSKLSMKDTVKYLTEAVQSGQPHHVITANPIMVMTAVNNPEYKRMMQGAE 66 Query: 67 LVVPDGTGVVWAAEYCQQPVAERVAGFDLLHELLHQGESYNWRVYLLGSTPEVIRETASR 126 ++VPDGTG+VWAA P+ RV GF+LLHELL GE+Y W+ +LLG+T EVI+E A R Sbjct: 67 IIVPDGTGIVWAAGVGGDPLEGRVTGFELLHELLKVGETYRWKFFLLGTTAEVIQEAAER 126 Query: 127 LQSQYAGIIIAGYHDGFFGPEADEEIVSEIIEAQPDLLFVARGADSQEPWIAKYKSRLNI 186 LQ QY II GY DGFFGP+ D ++ +I A PD+LFVARGAD+QEPWIA++K L + Sbjct: 127 LQMQYPAAIICGYRDGFFGPDEDAAVIEQIRAASPDILFVARGADNQEPWIAQHKQALQV 186 Query: 187 PVMMGVGGSFDVISGKSRRAPKAFQKLRAEWLYRLLKEPTRYKRMLALPKFAVKVLREKD 246 PV+MGVGGSFD+ISGK +RAPK FQKLR EW YRLLKEPTRYKRMLALPKF VKVLREK+ Sbjct: 187 PVVMGVGGSFDIISGKLKRAPKVFQKLRLEWFYRLLKEPTRYKRMLALPKFVVKVLREKE 246 Query: 247 KVTK 250 VTK Sbjct: 247 NVTK 250 >B1DED3.1 B1DED3_9BACL Glycosyl transferase, WecB/TagA/CpsF family EC=2.4.1.187 Length = 253 Score = 310 bits (795), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 142/244 (58%), Positives = 182/244 (74%) Query: 7 IPTVPIFGIRVSRVDMKATVSYLTEAVQRREPHQVITANPIMVMTALDNPAYMEIMKSAE 66 +PTVPI+GI S++ M TV YLTEA++ + VITANPIMVM+A+++ Y ++M+ AE Sbjct: 5 VPTVPIYGIPFSKMSMDETVKYLTEAIEHKRQTHVITANPIMVMSAVESQDYYKMMRKAE 64 Query: 67 LVVPDGTGVVWAAEYCQQPVAERVAGFDLLHELLHQGESYNWRVYLLGSTPEVIRETASR 126 L+VPDG GVVWAA Y PV ERV GFDLLH L+ +GE W YLLG++ E+I A + Sbjct: 65 LIVPDGAGVVWAANYVGTPVTERVTGFDLLHRLMQEGEKRKWTAYLLGTSTEIIEAAAEK 124 Query: 127 LQSQYAGIIIAGYHDGFFGPEADEEIVSEIIEAQPDLLFVARGADSQEPWIAKYKSRLNI 186 LQ QY + I G +G+FGPE D E++ + +A PDLLFVARGAD+QEPWIAKYK +L + Sbjct: 125 LQLQYPQVRIVGCRNGYFGPEQDAEVIEAVRQAAPDLLFVARGADTQEPWIAKYKKQLGV 184 Query: 187 PVMMGVGGSFDVISGKSRRAPKAFQKLRAEWLYRLLKEPTRYKRMLALPKFAVKVLREKD 246 P +MGVGGSFD+I+GK +RAP FQKLR EW YRLL+EP R RM+ LPKF VKV+R+K+ Sbjct: 185 PFIMGVGGSFDIIAGKLKRAPVLFQKLRLEWFYRLLQEPKRLPRMMVLPKFVVKVVRDKE 244 Query: 247 KVTK 250 V K Sbjct: 245 NVKK 248 >C0Z749.1 C0Z749_BREBN Probable teichoic acid biosynthesis protein A EC=2.4.1.187 Length = 245 Score = 232 bits (591), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 112/224 (50%), Positives = 156/224 (69%), Gaps = 1/224 (0%) Query: 22 MKATVSYLTEAVQRREPHQVITANPIMVMTALDNPAYMEIMKSAELVVPDGTGVVWAAEY 81 + TV ++TE +Q + V+TANP +VM A +N A+ I++ A VVPDG G+V+AA++ Sbjct: 18 FRETVDHITERIQGGQKTHVVTANPEIVMVARENRAFRSIVEQA-YVVPDGIGIVYAAKW 76 Query: 82 CQQPVAERVAGFDLLHELLHQGESYNWRVYLLGSTPEVIRETASRLQSQYAGIIIAGYHD 141 QP+ ERV G +LL L+ + + + W VYLLG+ P+VI +L ++Y I G D Sbjct: 77 TNQPIYERVTGVELLEALMAKADQHQWGVYLLGAKPDVIHLAKDKLSARYPNARIVGCRD 136 Query: 142 GFFGPEADEEIVSEIIEAQPDLLFVARGADSQEPWIAKYKSRLNIPVMMGVGGSFDVISG 201 G+F PE + +IV EI EA+P LLFVA GA Q+ W+AKY+ +LN +MMGVGGSFDVISG Sbjct: 137 GYFRPEEETQIVQEIAEAKPQLLFVALGAPRQDEWMAKYRDQLNASLMMGVGGSFDVISG 196 Query: 202 KSRRAPKAFQKLRAEWLYRLLKEPTRYKRMLALPKFAVKVLREK 245 K +RAP+ +QKL EW YRL EP+R+KR LA+P+F + VL+EK Sbjct: 197 KVKRAPEIWQKLHLEWFYRLASEPSRWKRQLAIPRFVLTVLKEK 240 >A4J962.1 A4J962_DESRM N-acetylmannosaminyltransferase EC=2.4.1.187 Length = 243 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 114/236 (48%), Positives = 154/236 (65%), Gaps = 1/236 (0%) Query: 10 VPIFGIRVSRVDMKATVSYLTEAVQR-REPHQVITANPIMVMTALDNPAYMEIMKSAELV 68 + + G V ++MK TVS + E ++ +PH +IT NP + A DN M++++ A+LV Sbjct: 3 IKLLGAPVDALNMKETVSQIKEFFKKGSKPHFIITLNPEYLYRAQDNEELMKLVQGADLV 62 Query: 69 VPDGTGVVWAAEYCQQPVAERVAGFDLLHELLHQGESYNWRVYLLGSTPEVIRETASRLQ 128 PDGTG+VWAA+ PV ERV G DL+ L+ E W ++LLG+ P V +TA L+ Sbjct: 63 TPDGTGIVWAAKMAGFPVPERVTGIDLMLNLIPVAEQEGWGIFLLGAAPGVAEDTAKNLK 122 Query: 129 SQYAGIIIAGYHDGFFGPEADEEIVSEIIEAQPDLLFVARGADSQEPWIAKYKSRLNIPV 188 QY +IIAG HDG+F P+ + IV +I EA+P LLFVA G QE WI +YK +L +PV Sbjct: 123 KQYPNLIIAGTHDGYFKPQEEAAIVKKIAEAKPHLLFVALGMPRQEQWIHRYKDQLGVPV 182 Query: 189 MMGVGGSFDVISGKSRRAPKAFQKLRAEWLYRLLKEPTRYKRMLALPKFAVKVLRE 244 MGVGGSFDVI+G+ R QKL EWL RLLKEP R++R L LPKFA V+++ Sbjct: 183 SMGVGGSFDVIAGRVERVSPWLQKLNLEWLGRLLKEPQRWRRQLVLPKFAWLVIKK 238 >Q9JRP3.1 Q9JRP3_THETY Putative uncharacterized protein lta1 Length = 245 Score = 212 bits (540), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/237 (46%), Positives = 153/237 (64%) Query: 12 IFGIRVSRVDMKATVSYLTEAVQRREPHQVITANPIMVMTALDNPAYMEIMKSAELVVPD 71 IFG+ + RV M+ V L +Q H V T N +VM A + YMEI+ + +L VPD Sbjct: 6 IFGVPIDRVTMRQAVEILNNFLQEDRLHIVATPNAEIVMMAQKDKEYMEILNNTDLNVPD 65 Query: 72 GTGVVWAAEYCQQPVAERVAGFDLLHELLHQGESYNWRVYLLGSTPEVIRETASRLQSQY 131 G G+V+A++ ++P+ ERVAGFDL+ E + S N ++YLLG+ P++ + L+ Y Sbjct: 66 GNGIVFASKVFKKPMPERVAGFDLMMEFIKDISSKNIKIYLLGAAPQIAEQARVNLEKLY 125 Query: 132 AGIIIAGYHDGFFGPEADEEIVSEIIEAQPDLLFVARGADSQEPWIAKYKSRLNIPVMMG 191 I G H G+F E + +I+ EI ++LFVA GA QE WI K + +L + + MG Sbjct: 126 PSAKIVGTHHGYFTQEEENKIIEEINNKGAEVLFVALGAPKQEKWIYKNRDKLKVKIAMG 185 Query: 192 VGGSFDVISGKSRRAPKAFQKLRAEWLYRLLKEPTRYKRMLALPKFAVKVLREKDKV 248 VGGSFDVI+GK +RAP ++KL EWLYRL+KEP RYKRM+ALPKFA+KVL K KV Sbjct: 186 VGGSFDVIAGKVKRAPYIYRKLGLEWLYRLIKEPWRYKRMMALPKFALKVLLHKGKV 242 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,486,964,800 Number of extensions: 61216482 Number of successful extensions: 139777 Number of sequences better than 1.0e-05: 891 Number of HSP's gapped: 138655 Number of HSP's successfully gapped: 891 Length of query: 251 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 119 Effective length of database: 1,817,122,223 Effective search space: 216237544537 Effective search space used: 216237544537 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)