BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0008.p (579 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7I4.1 B3K7I4_9BACI Phosphomannomutase EC=5.4.2.8 925 0.0 B1DED6.1 B1DED6_9BACL Phosphomannomutase EC=5.4.2.8 788 0.0 B3K4D5.1 B3K4D5_9BACI Phosphoglucomutase/phosphomannomutase alph... 716 0.0 A7GUC6.1 A7GUC6_BACCN Phosphoglucomutase/phosphomannomutase alph... 624 e-176 C3C9P4.1 C3C9P4_BACTU Phosphomannomutase 622 e-176 >B3K7I4.1 B3K7I4_9BACI Phosphomannomutase EC=5.4.2.8 Length = 572 Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/571 (77%), Positives = 497/571 (87%), Gaps = 1/571 (0%) Query: 8 MTQLSPKAAETLSRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGA 67 M+++S + +T+ RWL DP VDE TK EL L ++ +ELEERFYRDLEFGTGGLRGVIGA Sbjct: 1 MSEMSQRTIDTVQRWLNDPYVDEETKQELRSLEHDAKELEERFYRDLEFGTGGLRGVIGA 60 Query: 68 GSNRINRYTVGRATQGFANYILEQH-TGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGI 126 GSNRIN+YTVGRATQGFA YILE H EG+PSVVIAHDSR FSPEF LEAALVLAGNGI Sbjct: 61 GSNRINKYTVGRATQGFAQYILEAHGDAEGKPSVVIAHDSRHFSPEFALEAALVLAGNGI 120 Query: 127 EAHLFPSLRSTPQLSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVI 186 A L+PSLRSTPQLSF+VRHL ATGG+VITASHNPPEYNGYKVYN EGGQLVP EAE VI Sbjct: 121 VAKLYPSLRSTPQLSFSVRHLGATGGIVITASHNPPEYNGYKVYNREGGQLVPDEAENVI 180 Query: 187 SYILEVDSFNGVKRMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFK 246 + I EVDSF+ VKR+SQ +AEA GLL WLGE ED+AF DTV VSV R+ I S LG DFK Sbjct: 181 ARIQEVDSFSAVKRLSQADAEAQGLLVWLGEAEDQAFVDTVTDVSVNRELIASKLGEDFK 240 Query: 247 IVYTPLHGTGNLPVRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLG 306 IV+TPLHGTG PV VL IGF +HVVPEQ PD FSTVKSPNPEEREAFTLA+KLG Sbjct: 241 IVFTPLHGTGQAPVERVLRNIGFKHIHVVPEQAQPDGNFSTVKSPNPEEREAFTLAMKLG 300 Query: 307 EELGADLLIGTDPDADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGA 366 EE+GAD+LIGTDPDADRMGAVV++ +G++VVL+GNQSGA+MIHY L +L+E GKLP+NGA Sbjct: 301 EEVGADILIGTDPDADRMGAVVKNGQGEYVVLTGNQSGAIMIHYLLGQLKEAGKLPNNGA 360 Query: 367 VVKTIVTSEMGAAVAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAG 426 V+KTIVTSEMGAA+AEHYGA V NTLTGFKYIGEKMTQF++SG +TYLFGYEESYGYLAG Sbjct: 361 VIKTIVTSEMGAAIAEHYGAAVLNTLTGFKYIGEKMTQFEESGSHTYLFGYEESYGYLAG 420 Query: 427 NYARDKDAVLASMLIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQ 486 NYARDKDAVLASMLI EA AYYK QGKTLYDVLQELYEQFGYFLE+LESRTLKGKDGVAQ Sbjct: 421 NYARDKDAVLASMLICEAAAYYKGQGKTLYDVLQELYEQFGYFLETLESRTLKGKDGVAQ 480 Query: 487 IQGIMNDWRSNPPQEIAGAAVSEVLDYSLGLNGLPKENVLKYLLSDGSWFCLRPSGTEPK 546 IQ M+DWR NPPQ++ G +V +VLDY+ GL+GLPKENVLKYLL DGSWFCLRPSGTEPK Sbjct: 481 IQAKMSDWRDNPPQKVGGQSVKQVLDYAEGLDGLPKENVLKYLLEDGSWFCLRPSGTEPK 540 Query: 547 IKVYFAVRGESLQNAKDKVATLTQQVMSRVD 577 IKVYFAVRGESL +AK K+ +L+ QVM+RVD Sbjct: 541 IKVYFAVRGESLGDAKAKIQSLSDQVMARVD 571 >B1DED6.1 B1DED6_9BACL Phosphomannomutase EC=5.4.2.8 Length = 570 Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/566 (66%), Positives = 458/566 (80%), Gaps = 2/566 (0%) Query: 14 KAAETLSRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRIN 73 KA E WL D +DE TK EL + + +E+ +RFYRDLEFGTGGLRGV+GAG+NR+N Sbjct: 6 KAVERYQAWLNDTLIDEATKEELRSIEGQEKEITDRFYRDLEFGTGGLRGVMGAGTNRLN 65 Query: 74 RYTVGRATQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPS 133 YTVG+ATQG AN++L + EG+PS VIAHDSR SPEF L++ALVLA NG++ +LFPS Sbjct: 66 AYTVGKATQGLANWVLSRV--EGQPSAVIAHDSRNNSPEFALDSALVLAANGVKTYLFPS 123 Query: 134 LRSTPQLSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVD 193 LR TPQLS+ VR L + G+VITASHNPPEYNGYK Y A+G QL+P +AE+VI+ I +V Sbjct: 124 LRPTPQLSYAVRALGCSTGIVITASHNPPEYNGYKAYGADGCQLIPEDAEQVIASIGQVT 183 Query: 194 SFNGVKRMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLH 253 F+ VKRMS+E+AEA GLL WL + DE +TDTV A S+ ++ + S LG FK+V+TPLH Sbjct: 184 GFDQVKRMSREDAEAQGLLVWLDAEADEQYTDTVVAQSLNKELLQSGLGEKFKVVFTPLH 243 Query: 254 GTGNLPVRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADL 313 G+GNLPVR VL K GF+ VH+V EQE PD FSTVKSPNPEEREAFTLA+KL +E+ AD+ Sbjct: 244 GSGNLPVREVLRKAGFSNVHIVAEQEAPDGYFSTVKSPNPEEREAFTLAMKLAQEINADI 303 Query: 314 LIGTDPDADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVT 373 ++GTDPDADRMGAVV++N G++VVL+GNQSGALMI Y LS+L+E+G+LP+NG V+KTIVT Sbjct: 304 IMGTDPDADRMGAVVKNNNGEYVVLTGNQSGALMIEYVLSQLKERGQLPANGVVIKTIVT 363 Query: 374 SEMGAAVAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKD 433 SEMGA +A YGA V NTLTGFKYIGEKMT ++Q+GE+ +LFGYEESYGYL G+YARDKD Sbjct: 364 SEMGADIARSYGAAVENTLTGFKYIGEKMTAYEQTGEHAFLFGYEESYGYLTGDYARDKD 423 Query: 434 AVLASMLIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMND 493 AV+AS+LI EA AYY +QGKTLYDVL ELY + G++LE LESRTLKG DGV QI GIMND Sbjct: 424 AVVASLLICEAAAYYSSQGKTLYDVLLELYAKHGFYLEGLESRTLKGLDGVQQIAGIMND 483 Query: 494 WRSNPPQEIAGAAVSEVLDYSLGLNGLPKENVLKYLLSDGSWFCLRPSGTEPKIKVYFAV 553 WR+NPP EI G V +VLDY GL+GL ENVLKY+L+DGSWFCLRPSGTEPKIKVYFAV Sbjct: 484 WRNNPPAEINGVKVEKVLDYLGGLDGLRPENVLKYMLADGSWFCLRPSGTEPKIKVYFAV 543 Query: 554 RGESLQNAKDKVATLTQQVMSRVDGK 579 RGES ++A + + L VM RVD K Sbjct: 544 RGESTEHAAELLGNLRGAVMERVDSK 569 >B3K4D5.1 B3K4D5_9BACI Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I Length = 575 Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/568 (61%), Positives = 442/568 (77%), Gaps = 4/568 (0%) Query: 10 QLSPKAAETLSRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGS 69 Q +A + RWL +DE +K EL +A+ E+ +RFY++LEFGTGGLRGVIGAGS Sbjct: 4 QAQEQAVQAYKRWLNSRVIDEASKDELRAIAHNESEIADRFYKELEFGTGGLRGVIGAGS 63 Query: 70 NRINRYTVGRATQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAH 129 NRIN YTVG+ATQG A + +++ PS IA+DSR+FSPE LEAALVLAGNG++A+ Sbjct: 64 NRINIYTVGKATQGLAAVLKQEYES---PSAAIAYDSRQFSPELALEAALVLAGNGVKAY 120 Query: 130 LFPSLRSTPQLSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYI 189 +F +LR TP+LS+ VRHL A G+VITASHNPPEYNGYKVY ++GGQ+ P A +VI I Sbjct: 121 VFETLRPTPELSYAVRHLNAEAGIVITASHNPPEYNGYKVYGSDGGQITPDTAARVIKEI 180 Query: 190 LEVDSFNGVKRMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVY 249 V SF ++++ + EAE GLL WLG++ D+A+T VA VS I +++IV+ Sbjct: 181 GHVASFEEIRKLDRAEAEGSGLLVWLGQEIDDAYTLAVAGVS-QNHGIIPEASSNYRIVF 239 Query: 250 TPLHGTGNLPVRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEEL 309 TPLHGTGN+PVR+VL +GF V VVPEQE PD+ FSTV+SPNPEE AF +AI + Sbjct: 240 TPLHGTGNVPVRAVLKHLGFQHVDVVPEQEQPDANFSTVQSPNPEEHAAFEIAISQAKAS 299 Query: 310 GADLLIGTDPDADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVK 369 ADL++GTDPDADRMGAV++D++G++ +LSGNQSGA+M+HY L ++ +G LP NGA++K Sbjct: 300 AADLILGTDPDADRMGAVIQDDQGQYFILSGNQSGAIMVHYLLESMKNKGTLPENGAIIK 359 Query: 370 TIVTSEMGAAVAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYA 429 TIVTS+MGAA+A+ YG TVFNTLTGFKYIGEKMTQF+++G + ++FGYEESYGYLAG+YA Sbjct: 360 TIVTSDMGAAIADAYGMTVFNTLTGFKYIGEKMTQFEKTGAFEFIFGYEESYGYLAGSYA 419 Query: 430 RDKDAVLASMLIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQG 489 RDKDAV+A+MLIAEAGAYYK QGKTLY+VLQELY +GYF E LE+RTLKG GV I G Sbjct: 420 RDKDAVVAAMLIAEAGAYYKTQGKTLYEVLQELYRTYGYFAEKLETRTLKGIQGVQLIAG 479 Query: 490 IMNDWRSNPPQEIAGAAVSEVLDYSLGLNGLPKENVLKYLLSDGSWFCLRPSGTEPKIKV 549 IM+ WR P E AG +SE D+SLGL GLP+ENVLK+ L+DGSWFCLRPSGTEPKIK+ Sbjct: 480 IMSAWREAAPSEAAGIELSETEDFSLGLYGLPQENVLKFHLADGSWFCLRPSGTEPKIKL 539 Query: 550 YFAVRGESLQNAKDKVATLTQQVMSRVD 577 YFAV+G + + A+ K+A LTQ VM+R+D Sbjct: 540 YFAVQGSTYEEAQAKIAALTQDVMARID 567 >A7GUC6.1 A7GUC6_BACCN Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I Length = 574 Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust. Identities = 303/568 (53%), Positives = 407/568 (71%), Gaps = 12/568 (2%) Query: 20 SRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRINRYTVGR 79 SRWL ++D K +L + + +++E+ FY++LEFGTGG+RG +GAG+NR+N YTV + Sbjct: 8 SRWLSYANLDAELKQQLEDMKQDEKKIEDSFYKNLEFGTGGMRGELGAGTNRLNVYTVRK 67 Query: 80 ATQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPSLRSTPQ 139 AT+G A++I + VV+A+DSR SPEF +E A L +GI ++F SLR TP Sbjct: 68 ATKGLAHFIESLGEEAKKRGVVVAYDSRHKSPEFAMEVAATLGAHGITTYVFESLRPTPV 127 Query: 140 LSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVDSFNGVK 199 LSF VRHL G+V+TASHNPPEYNGYKVY +GGQL P EA+++I Y+ +V+ V+ Sbjct: 128 LSFAVRHLHTISGIVLTASHNPPEYNGYKVYGEDGGQLPPKEADELIRYVNQVEDELTVE 187 Query: 200 RMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLHGTGNLP 259 + E+ +A GLLH +G + DEA+ + + V + + E+ +G+D KIV+TPLHGT N+P Sbjct: 188 VANVEQLKADGLLHIIGTEVDEAYVEQLKTVIINK-EMVEKVGKDLKIVFTPLHGTSNIP 246 Query: 260 VRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADLLIGTDP 319 VR L +GFT V VV EQELPD FSTVKSPNPEE AF LAI+ GE++GAD+LI TDP Sbjct: 247 VRQGLEAVGFTDVTVVKEQELPDPNFSTVKSPNPEEHAAFELAIRDGEKVGADVLIATDP 306 Query: 320 DADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVTSEMGAA 379 DADR+G VR++ G+F VL+GNQ+GALM+ Y LS+ ++ G LP NG V+KTIVTSE+G Sbjct: 307 DADRLGVAVRNHNGEFQVLTGNQTGALMLEYLLSQKEQNGTLPKNGVVLKTIVTSEIGRT 366 Query: 380 VAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKDAVLASM 439 +A+ YG +TLTGFK+IGEK+ Q+++SG+Y + FGYEESYGYL + RDKDAV + + Sbjct: 367 IAKAYGLDTVDTLTGFKFIGEKIKQYEESGQYEFQFGYEESYGYLIRPFCRDKDAVQSVL 426 Query: 440 LIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMNDWRSNPP 499 E AYYK+QGKTLYD L E++E++G+F E L S TLKGKDG +IQ +M +R NPP Sbjct: 427 FACEVAAYYKSQGKTLYDGLLEIFEKYGFFREDLVSLTLKGKDGAEKIQEMMTAFRENPP 486 Query: 500 QEIAGAAVSEVLDYSLG-----LNG------LPKENVLKYLLSDGSWFCLRPSGTEPKIK 548 +E+AG V V DY ++G LPK NVLKY L+DGSWFCLRPSGTEPKIK Sbjct: 487 KEVAGLTVKTVEDYKASTITSLIDGSQEEIQLPKSNVLKYQLTDGSWFCLRPSGTEPKIK 546 Query: 549 VYFAVRGESLQNAKDKVATLTQQVMSRV 576 YF V+ +SLQN++ K+ T+ + VM+R+ Sbjct: 547 FYFGVKADSLQNSEQKLLTIKEDVMNRL 574 >C3C9P4.1 C3C9P4_BACTU Phosphomannomutase Length = 574 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 305/569 (53%), Positives = 405/569 (71%), Gaps = 12/569 (2%) Query: 19 LSRWLQDPSVDENTKAELNLLANEPQELEERFYRDLEFGTGGLRGVIGAGSNRINRYTVG 78 SRWL +D K +L + + +++E+ FY++LEFGTGG+RG +GAG+NR+N YTV Sbjct: 7 FSRWLSYAELDAELKEQLENMKQDEKKIEDSFYKNLEFGTGGMRGELGAGTNRLNVYTVR 66 Query: 79 RATQGFANYILEQHTGEGRPSVVIAHDSRRFSPEFTLEAALVLAGNGIEAHLFPSLRSTP 138 +ATQG A +I + + VV+A+DSR SPEF +E A L +GI ++F SLR TP Sbjct: 67 KATQGLAKFIEKLGEEAKKRGVVVAYDSRHKSPEFAMEVAATLGAHGITTYVFESLRPTP 126 Query: 139 QLSFTVRHLKATGGVVITASHNPPEYNGYKVYNAEGGQLVPHEAEKVISYILEVDSFNGV 198 LSF VRHL G+V+TASHNPPEYNGYKVY +GGQL P EA+++ISY+ V+ V Sbjct: 127 VLSFAVRHLHTVSGIVLTASHNPPEYNGYKVYGEDGGQLPPKEADELISYVNAVEDELTV 186 Query: 199 KRMSQEEAEAGGLLHWLGEQEDEAFTDTVAAVSVARDEITSTLGRDFKIVYTPLHGTGNL 258 + E+ +A GLLH +G++ D+A+ + V + + E+ +G+D KIV+TPLHGT N+ Sbjct: 187 EVADVEQLKADGLLHIIGQEVDDAYAAELNNVIINK-EMVQKVGKDLKIVFTPLHGTSNI 245 Query: 259 PVRSVLSKIGFTQVHVVPEQELPDSEFSTVKSPNPEEREAFTLAIKLGEELGADLLIGTD 318 VR L ++GFT V VV EQELPD FSTVKSPNPEE AF AI+ GE++GAD+LI TD Sbjct: 246 SVRRGLEEVGFTDVTVVKEQELPDPNFSTVKSPNPEEHAAFEYAIRDGEKIGADVLIATD 305 Query: 319 PDADRMGAVVRDNEGKFVVLSGNQSGALMIHYYLSRLQEQGKLPSNGAVVKTIVTSEMGA 378 PDADR+G VR+++G+F VL+GNQ+GALM+ Y LS+ +E G LP NG V+KTIVTSE+G Sbjct: 306 PDADRLGVAVRNHDGEFQVLTGNQTGALMLDYLLSQKKENGTLPENGVVLKTIVTSEIGR 365 Query: 379 AVAEHYGATVFNTLTGFKYIGEKMTQFQQSGEYTYLFGYEESYGYLAGNYARDKDAVLAS 438 +A+ YG +TLTGFK+IGEK+ Q+++SG+Y + FGYEESYGYL G + RDKDAV + Sbjct: 366 TIAKAYGLDTVDTLTGFKFIGEKIKQYEESGQYEFQFGYEESYGYLIGPFCRDKDAVQSV 425 Query: 439 MLIAEAGAYYKAQGKTLYDVLQELYEQFGYFLESLESRTLKGKDGVAQIQGIMNDWRSNP 498 + E AYYK+QGKTLYD L E++E++G+FLE L S TLKGKDG QIQ +M +R NP Sbjct: 426 LFACEVAAYYKSQGKTLYDGLLEVFEKYGFFLEDLVSLTLKGKDGAEQIQEMMATFRENP 485 Query: 499 PQEIAGAAVSEVLDYSLGL-----NG------LPKENVLKYLLSDGSWFCLRPSGTEPKI 547 P+E+AG V V DY + +G LPK NVLKY L DGSWFCLRPSGTEPKI Sbjct: 486 PKEVAGLTVVAVEDYKASIITSLQDGHKEEIHLPKSNVLKYQLEDGSWFCLRPSGTEPKI 545 Query: 548 KVYFAVRGESLQNAKDKVATLTQQVMSRV 576 K YF V+ SLQN++ K+ T+ + +M+R+ Sbjct: 546 KFYFGVQDNSLQNSEQKLLTIKEDIMNRL 574 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,588,126,076 Number of extensions: 161044472 Number of successful extensions: 340399 Number of sequences better than 1.0e-05: 2976 Number of HSP's gapped: 335053 Number of HSP's successfully gapped: 3150 Length of query: 579 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 438 Effective length of database: 1,732,333,088 Effective search space: 758761892544 Effective search space used: 758761892544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 134 (56.2 bits)