BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0327.0006.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7I6.1 B3K7I6_9BACI Putative uncharacterized protein                 78   3e-13
B1DED9.1 B1DED9_9BACL Putative uncharacterized protein                 58   2e-07

>B3K7I6.1 B3K7I6_9BACI Putative uncharacterized protein
          Length = 66

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 43/59 (72%)

Query: 22 RRRGISKWTIVQWFLIPVLLVAALCGGMVAGYVVLGKKEFSDVLQWSTWKHVYDLVFAP 80
          +R   S W I    +IPVLLV AL GGMV GYVVLG +E S+V +W TWKHV+DL+FAP
Sbjct: 8  KRSKTSGWKIAVRIMIPVLLVLALFGGMVFGYVVLGDQELSEVFEWGTWKHVFDLIFAP 66


>B1DED9.1 B1DED9_9BACL Putative uncharacterized protein
          Length = 98

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 4  QNNSKPEATHEAEQHQPVRRRGISKWTIVQWFLIPVLLVAALCGGMVAGYVVLGKKEFSD 63
          +  SK      +E+ Q      I+ W I++  ++PV++V  L  G+  GY V+GK+  SD
Sbjct: 22 EERSKAVGGDHSEKKQRSTGARIAFW-ILRKSMVPVIMVIMLITGLYVGYAVVGKQPGSD 80

Query: 64 VLQWSTWKHVYDLVFA 79
          V  W TW+H+YDLVF+
Sbjct: 81 VFHWETWQHMYDLVFS 96


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.135    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 554,365,063
Number of extensions: 19044828
Number of successful extensions: 47749
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 47750
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)