BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0003.p (332 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7I9.1 B3K7I9_9BACI Cell shape determining protein, MreB/Mrl f... 561 e-158 B1DEE2.1 B1DEE2_9BACL Cell shape determining protein, MreB/Mrl f... 497 e-139 C0Z755.1 C0Z755_BREBN MreB-like protein 486 e-135 A8FI76.1 A8FI76_BACP2 Rod shape-determining protein Mbl 474 e-132 B4AJ32.1 B4AJ32_BACPU Rod shape-determining protein MreB 473 e-131 >B3K7I9.1 B3K7I9_9BACI Cell shape determining protein, MreB/Mrl family Length = 333 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 279/332 (84%), Positives = 305/332 (91%) Query: 1 MLSKDIGIDLGTANVLIHVKGRGVVLDEPSVVTLESDTKKVLAVGEQARRMVGRTPGNIM 60 MLSKDIGIDLGTANVLIHVKG+GVVLDEPSVVT+E+DTK+VLAVGE+ARRMVGRTPGNI Sbjct: 2 MLSKDIGIDLGTANVLIHVKGKGVVLDEPSVVTIETDTKRVLAVGEEARRMVGRTPGNIT 61 Query: 61 TIRPLRDGVIADFAITEMMLKSFIDRVGGRSWYARPRILICAPTNITSVEQKSIREAAER 120 IRPLRDGVIADF ITE MLK FIDRVG RSW++RPRILICAPTNITSVEQK+IREAAER Sbjct: 62 AIRPLRDGVIADFEITEAMLKYFIDRVGARSWHSRPRILICAPTNITSVEQKAIREAAER 121 Query: 121 SGAKEVFMEEEPKAAAIGAGMDIYQPSGNMVVDIGGGTTDVAVLSMGDVVTASSIKIAGD 180 SGA++VF+EEEPKAAAIGAGMDI+QPSGNMVVDIGGGTTDVAVLSMGDVVTASSIK+AGD Sbjct: 122 SGARDVFLEEEPKAAAIGAGMDIFQPSGNMVVDIGGGTTDVAVLSMGDVVTASSIKMAGD 181 Query: 181 KFDEAXXXXXXXXXXXXXGERTAEDIKLNIGSVRPGGMKSEMDIRGRDMVSGLPQTLTIS 240 KFDEA GERTAED+K+ IG+VRPGG ++EMDIRGRDMVSGLP T+T+S Sbjct: 182 KFDEAITKYVKHKYKLLIGERTAEDLKMAIGTVRPGGRQAEMDIRGRDMVSGLPFTVTVS 241 Query: 241 SGEVKEALWDPVSSIVAAAKSVLERTPPELSADIIDRGVVLTGGGALLNGLDELLSEELH 300 S EV+EALWDPVSSIV AAKSVLERTPPELSADIIDRGV+LTGGGALL+GLDELL++EL Sbjct: 242 SEEVQEALWDPVSSIVLAAKSVLERTPPELSADIIDRGVILTGGGALLHGLDELLTDELR 301 Query: 301 VPVWVAEDPMHCVVKGTGIMLDHLDKNVKKKF 332 VPV VAEDPMHCVVKGTGIMLD+LDK VKKKF Sbjct: 302 VPVLVAEDPMHCVVKGTGIMLDNLDKVVKKKF 333 >B1DEE2.1 B1DEE2_9BACL Cell shape determining protein, MreB/Mrl family Length = 333 Score = 497 bits (1279), Expect = e-139, Method: Compositional matrix adjust. Identities = 263/330 (79%), Positives = 292/330 (88%) Query: 1 MLSKDIGIDLGTANVLIHVKGRGVVLDEPSVVTLESDTKKVLAVGEQARRMVGRTPGNIM 60 MLSKDIGIDLGTANV IHVKG+GVVLDEPSVV +ESD+K+VLAVGE+A RMVGRTPGNI+ Sbjct: 1 MLSKDIGIDLGTANVSIHVKGKGVVLDEPSVVAIESDSKRVLAVGEEAHRMVGRTPGNIV 60 Query: 61 TIRPLRDGVIADFAITEMMLKSFIDRVGGRSWYARPRILICAPTNITSVEQKSIREAAER 120 IRPLRDGVIADF ITE+MLK+FIDRV GR W++RPRILICAPTNITSVEQK+IREAAER Sbjct: 61 AIRPLRDGVIADFEITEIMLKAFIDRVEGRKWFSRPRILICAPTNITSVEQKAIREAAER 120 Query: 121 SGAKEVFMEEEPKAAAIGAGMDIYQPSGNMVVDIGGGTTDVAVLSMGDVVTASSIKIAGD 180 SGAKEVF+EEEPKAAAIGAGMDI+QPSGNMVVDIGGGTTDVAVLSMGDVVT+SSIK+AGD Sbjct: 121 SGAKEVFLEEEPKAAAIGAGMDIFQPSGNMVVDIGGGTTDVAVLSMGDVVTSSSIKVAGD 180 Query: 181 KFDEAXXXXXXXXXXXXXGERTAEDIKLNIGSVRPGGMKSEMDIRGRDMVSGLPQTLTIS 240 KFD A GERT+EDIK+ IG+V G E+DIRGRDMVSGLP T+TI Sbjct: 181 KFDAAIMKYIKDKYRLLIGERTSEDIKIKIGTVYEDGRHDEIDIRGRDMVSGLPLTITIR 240 Query: 241 SGEVKEALWDPVSSIVAAAKSVLERTPPELSADIIDRGVVLTGGGALLNGLDELLSEELH 300 S EV+EALWDPV SIVAAAK VLERTPPELS+DIIDRGV+LTGGGALL+GLD LL++EL Sbjct: 241 SAEVREALWDPVMSIVAAAKMVLERTPPELSSDIIDRGVILTGGGALLDGLDALLADELK 300 Query: 301 VPVWVAEDPMHCVVKGTGIMLDHLDKNVKK 330 VPV +AEDPMHCVVKGTGI+LD+LDK KK Sbjct: 301 VPVLIAEDPMHCVVKGTGILLDNLDKLGKK 330 >C0Z755.1 C0Z755_BREBN MreB-like protein Length = 338 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 243/327 (74%), Positives = 282/327 (86%), Gaps = 2/327 (0%) Query: 1 MLSKDIGIDLGTANVLIHVKGRGVVLDEPSVVTLESDTKKVLAVGEQARRMVGRTPGNIM 60 M KDIGIDLGTANVL+ VKG+G+VLDEPSVV ++S T+KVLAVG +A RMVGRTPGNI+ Sbjct: 1 MFGKDIGIDLGTANVLVFVKGKGIVLDEPSVVAIDSKTRKVLAVGNEAYRMVGRTPGNIV 60 Query: 61 TIRPLRDGVIADFAITEMMLKSFIDRVGGRSWYARPRILICAPTNITSVEQKSIREAAER 120 IRPLR+GVIADF ITE MLK F++++GG+S +ARPRILIC PTNITSVEQK+IREAAER Sbjct: 61 AIRPLREGVIADFEITEAMLKHFLNKIGGKSMFARPRILICCPTNITSVEQKAIREAAER 120 Query: 121 S-GAKEVFMEEEPKAAAIGAGMDIYQPSGNMVVDIGGGTTDVAVLSMGDVVTASSIKIAG 179 S GA+EVF+EEEPK AA+GAGMDI+QPSGNMVVDIGGGTTDVAVLSMGD+VT+SSIKIAG Sbjct: 121 SGGAREVFIEEEPKVAAVGAGMDIFQPSGNMVVDIGGGTTDVAVLSMGDIVTSSSIKIAG 180 Query: 180 DKFDEAXXXXXXXXXXXXXGERTAEDIKLNIGSVRPGGMKSEMDIRGRDMVSGLPQTLTI 239 D FD A GERTAEDIK+ IG+V GG + EMDIRGRDMVSGLPQT+TI Sbjct: 181 DTFDVAIMRYIKNKYKLLIGERTAEDIKVQIGTV-SGGRQDEMDIRGRDMVSGLPQTITI 239 Query: 240 SSGEVKEALWDPVSSIVAAAKSVLERTPPELSADIIDRGVVLTGGGALLNGLDELLSEEL 299 S EV+EAL + VS+IV A+KSVLERTPPELSADIID+GV LTGGGALL+G+DE+L+EEL Sbjct: 240 RSNEVQEALAESVSAIVQASKSVLERTPPELSADIIDKGVFLTGGGALLHGIDEILAEEL 299 Query: 300 HVPVWVAEDPMHCVVKGTGIMLDHLDK 326 VPV VA++PM CV KGTG+MLD+LDK Sbjct: 300 KVPVLVADEPMMCVAKGTGMMLDYLDK 326 >A8FI76.1 A8FI76_BACP2 Rod shape-determining protein Mbl Length = 333 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/332 (68%), Positives = 279/332 (84%) Query: 1 MLSKDIGIDLGTANVLIHVKGRGVVLDEPSVVTLESDTKKVLAVGEQARRMVGRTPGNIM 60 M ++DIGIDLGTANVLIHVKG+G+VL+EPSVV L+ ++ KVLAVGE+ARRMVGRTPGNI+ Sbjct: 1 MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVALDKNSGKVLAVGEEARRMVGRTPGNIV 60 Query: 61 TIRPLRDGVIADFAITEMMLKSFIDRVGGRSWYARPRILICAPTNITSVEQKSIREAAER 120 IRPL+DGVIADF +TE MLK FI+ + + +++PR+LIC PTNITSVEQK+I+EAAE+ Sbjct: 61 AIRPLKDGVIADFEVTEAMLKHFINSLNVKGLFSKPRMLICCPTNITSVEQKAIKEAAEK 120 Query: 121 SGAKEVFMEEEPKAAAIGAGMDIYQPSGNMVVDIGGGTTDVAVLSMGDVVTASSIKIAGD 180 SG K VF+EEEPK AAIGAGMDI+QPSGNMVVDIGGGTTD+AV+SMGD+VTASSIK+AGD Sbjct: 121 SGGKHVFLEEEPKVAAIGAGMDIFQPSGNMVVDIGGGTTDIAVISMGDIVTASSIKMAGD 180 Query: 181 KFDEAXXXXXXXXXXXXXGERTAEDIKLNIGSVRPGGMKSEMDIRGRDMVSGLPQTLTIS 240 KFD GERTAEDIK+ + +V P E+ IRGRDMV+GLP+T+T++ Sbjct: 181 KFDLEILNYIKKEYKLLIGERTAEDIKIQVATVFPDARHEEISIRGRDMVTGLPRTITVT 240 Query: 241 SGEVKEALWDPVSSIVAAAKSVLERTPPELSADIIDRGVVLTGGGALLNGLDELLSEELH 300 S EV+EAL + VS+IV AAK VLERTPPELSADIIDRGV++TGGGALLNGLD+LL+EEL Sbjct: 241 SKEVEEALRESVSAIVQAAKQVLERTPPELSADIIDRGVIITGGGALLNGLDQLLAEELK 300 Query: 301 VPVWVAEDPMHCVVKGTGIMLDHLDKNVKKKF 332 VPV+VAE+PM CV GTG+MLD++DK K+K Sbjct: 301 VPVFVAENPMDCVAVGTGVMLDNMDKLPKRKL 332 >B4AJ32.1 B4AJ32_BACPU Rod shape-determining protein MreB Length = 333 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/332 (68%), Positives = 279/332 (84%) Query: 1 MLSKDIGIDLGTANVLIHVKGRGVVLDEPSVVTLESDTKKVLAVGEQARRMVGRTPGNIM 60 M ++DIGIDLGTANVLIHVKG+G+VL+EPSVV L+ ++ KVLAVGE+ARRMVGRTPGNI+ Sbjct: 1 MFARDIGIDLGTANVLIHVKGKGIVLNEPSVVALDKNSGKVLAVGEEARRMVGRTPGNIV 60 Query: 61 TIRPLRDGVIADFAITEMMLKSFIDRVGGRSWYARPRILICAPTNITSVEQKSIREAAER 120 IRPL+DGVIADF +TE MLK FI+ + + +++PR+LIC PTNITSVEQK+I+EAAE+ Sbjct: 61 AIRPLKDGVIADFEVTEAMLKHFINSLNVKGLFSKPRMLICCPTNITSVEQKAIKEAAEK 120 Query: 121 SGAKEVFMEEEPKAAAIGAGMDIYQPSGNMVVDIGGGTTDVAVLSMGDVVTASSIKIAGD 180 SG K VF+EEEPK AAIGAGMDI+QPSGNMVVDIGGGTTD+AV+SMGD+VTASSIK++GD Sbjct: 121 SGGKHVFLEEEPKVAAIGAGMDIFQPSGNMVVDIGGGTTDIAVISMGDIVTASSIKMSGD 180 Query: 181 KFDEAXXXXXXXXXXXXXGERTAEDIKLNIGSVRPGGMKSEMDIRGRDMVSGLPQTLTIS 240 KFD GERTAEDIK+ + +V P E+ IRGRDMV+GLP+T+T++ Sbjct: 181 KFDLEILNYIKKEYKLLIGERTAEDIKIQVATVFPDARHEEISIRGRDMVTGLPRTITVT 240 Query: 241 SGEVKEALWDPVSSIVAAAKSVLERTPPELSADIIDRGVVLTGGGALLNGLDELLSEELH 300 S EV+EAL + VS+IV AAK VLERTPPELSADIIDRGV++TGGGALLNGLD+LL+EEL Sbjct: 241 SKEVEEALRESVSAIVQAAKQVLERTPPELSADIIDRGVIITGGGALLNGLDQLLAEELK 300 Query: 301 VPVWVAEDPMHCVVKGTGIMLDHLDKNVKKKF 332 VPV+VAE+PM CV GTG+MLD++DK K+K Sbjct: 301 VPVFVAENPMDCVAVGTGVMLDNMDKLPKRKL 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,897,204,397 Number of extensions: 78485535 Number of successful extensions: 239264 Number of sequences better than 1.0e-05: 2762 Number of HSP's gapped: 237428 Number of HSP's successfully gapped: 2767 Length of query: 332 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 196 Effective length of database: 1,779,438,163 Effective search space: 348769879948 Effective search space used: 348769879948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)