BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0327.0002.p (247 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7J1.1 B3K7J1_9BACI Peptidase M23B 275 2e-72 Q2BFY3.1 Q2BFY3_9BACI SpoIIQ 178 3e-43 C3IZ21.1 C3IZ21_9BACI Peptidase M23 177 9e-43 B7Y7H1.1 B7Y7H1_9BACI Peptidase M23 177 9e-43 Q5KUL2.1 Q5KUL2_GEOKA Stage II sporulation protein Q 177 9e-43 >B3K7J1.1 B3K7J1_9BACI Peptidase M23B Length = 246 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/248 (60%), Positives = 182/248 (73%), Gaps = 3/248 (1%) Query: 1 MNEQDKNKTNHDESLKNKQGDSGAKPSSWNRMLSKRWVFPAVYTAAAAIILTLVWVYQDA 60 MNEQ+KN H+E+ K QGDS SSW + LSKRWVFPA Y AAAAIILTLVWVYQDA Sbjct: 1 MNEQNKNSKPHEETPKTVQGDSAVTSSSWKKALSKRWVFPAAYLAAAAIILTLVWVYQDA 60 Query: 61 GQKPLKP-DTAAVVSQXXXXXXXXXXSAKDDPAALEVVASAESMVWPVASPADVEVVKPF 119 QK L P + A VS+ + +D A+EV A+A++M+WPVA V +VKP+ Sbjct: 61 SQKTLNPQEEATTVSESVQGSEKPAATEGNDGEAVEVTANAQAMIWPVADDVAVSIVKPY 120 Query: 120 YDEKGTEENHVAAMVQYNDTFVPNAGIDIAREDNQPFDVKAALSGEVTRVEDVPVFGKVV 179 +DE E H AMVQYNDTF PN GID+A D+ F+V+AAL+G+VTRVE+ PV G VV Sbjct: 121 FDETNPE-THQEAMVQYNDTFTPNLGIDLAAADDTMFEVRAALTGKVTRVENHPVNGNVV 179 Query: 180 EITSTGNVKTVYQSLGDTKVKQGDEVKQGDMLATAGRSEIEKNLGNHVHFEVYEDGKLVN 239 EITS G+ KTVYQSL + KVK+G EVKQGD +ATAGRSE+EK+LGNHVHFEVYE GKLVN Sbjct: 180 EITS-GDTKTVYQSLNEVKVKEGAEVKQGDSIATAGRSELEKDLGNHVHFEVYEGGKLVN 238 Query: 240 PSDLLPQR 247 P +LPQ+ Sbjct: 239 PVSVLPQK 246 >Q2BFY3.1 Q2BFY3_9BACI SpoIIQ Length = 321 Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/230 (42%), Positives = 134/230 (58%), Gaps = 10/230 (4%) Query: 15 LKNKQGDSGAKPSSWNRMLSKRWVFPAVYTAAAAIILTLVWVYQDAGQKPLKPDTAAVVS 74 ++ ++ ++ S + R + KRW FPA+Y A+AAIILT V YQ++ S Sbjct: 1 MREEEKQRSSQDSGFKRFMKKRWAFPAIYLASAAIILTAVLWYQNSNN----------AS 50 Query: 75 QXXXXXXXXXXSAKDDPAALEVVASAESMVWPVASPADVEVVKPFYDEKGTEENHVAAMV 134 K D ++EV S E+ V PVA+ VE+ K FYD G +E AA+V Sbjct: 51 DEYDYSDTDVAEKKYDEPSVEVTRSMENFVMPVANQDSVEIQKQFYDYTGKKEEQEAALV 110 Query: 135 QYNDTFVPNAGIDIAREDNQPFDVKAALSGEVTRVEDVPVFGKVVEITSTGNVKTVYQSL 194 YN+T+ PN GIDIA++D + F+VKAALSG VTRV++ + G V+EI + T YQS+ Sbjct: 111 FYNNTYHPNTGIDIAQKDGESFEVKAALSGTVTRVDEDALLGNVIEIEHDKGIVTQYQSV 170 Query: 195 GDTKVKQGDEVKQGDMLATAGRSEIEKNLGNHVHFEVYEDGKLVNPSDLL 244 D VKQGD+V+QG LA AG+S + G HVHFE+ +D VNP D Sbjct: 171 TDVSVKQGDQVEQGQALAKAGQSLFNEEAGVHVHFEIRKDNVPVNPLDYF 220 >C3IZ21.1 C3IZ21_9BACI Peptidase M23 Length = 295 Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%) Query: 25 KPSSWNRMLSKRWVFPAVYTAAAAIILTLVWVYQDAGQKPLKPDTAAVVSQXXXXXXXXX 84 K SS R+ KRWVFPA+Y ++AA+I+ +Q ++ D A Sbjct: 6 KQSSLKRLFRKRWVFPAIYLSSAALIVAGALWFQLGKEENTGRDNVA-----------KN 54 Query: 85 XSAKDDPAALEVVASAESMVWPVASPADVEVVKPFYDEKGTEENHVAAMVQYNDTFVPNA 144 +A+ + A+ V + E++ PV P V+V PFYD+K +E AA+V Y+ T+ PN Sbjct: 55 GTAQQENPAVPVNETVETIAMPVLDPNAVQVKTPFYDDKASEAEQEAALVFYDHTYHPNQ 114 Query: 145 GIDIAREDNQPFDVKAALSGEVTRVEDVPVFGKVVEITSTGNVKTVYQSLGDTKVKQGDE 204 GID+ R+D + FDV A+LSG VT+ E P+ G VVEI V TVYQSL D KV+ GD Sbjct: 115 GIDLVRQDGKTFDVTASLSGTVTKAEKDPILGYVVEINHEQGVTTVYQSLADVKVEAGDT 174 Query: 205 VKQGDMLATAGRSEIEKNLGNHVHFEVYEDGKLVNPSDLL 244 VKQG+++ AG+SE K G HVHFE+ +DG+ VNP D + Sbjct: 175 VKQGEVIGKAGQSEFNKEAGIHVHFEIRKDGRAVNPIDYV 214 >B7Y7H1.1 B7Y7H1_9BACI Peptidase M23 Length = 295 Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%) Query: 25 KPSSWNRMLSKRWVFPAVYTAAAAIILTLVWVYQDAGQKPLKPDTAAVVSQXXXXXXXXX 84 K SS R+ KRWVFPA+Y ++AA+I+ +Q ++ D A Sbjct: 6 KQSSLKRLFRKRWVFPAIYLSSAALIVAGALWFQLGKEENTGRDNVA-----------KN 54 Query: 85 XSAKDDPAALEVVASAESMVWPVASPADVEVVKPFYDEKGTEENHVAAMVQYNDTFVPNA 144 +A+ + A+ V + E++ PV P V+V PFYD+K +E AA+V Y+ T+ PN Sbjct: 55 GTAQQENPAVPVNETVETIAMPVLDPNAVQVKTPFYDDKASEAEQEAALVFYDHTYHPNQ 114 Query: 145 GIDIAREDNQPFDVKAALSGEVTRVEDVPVFGKVVEITSTGNVKTVYQSLGDTKVKQGDE 204 GID+ R+D + FDV A+LSG VT+ E P+ G VVEI V TVYQSL D KV+ GD Sbjct: 115 GIDLVRQDGKTFDVTASLSGTVTKAEKDPILGYVVEINHEQGVTTVYQSLADVKVEAGDT 174 Query: 205 VKQGDMLATAGRSEIEKNLGNHVHFEVYEDGKLVNPSDLL 244 VKQG+++ AG+SE K G HVHFE+ +DG+ VNP D + Sbjct: 175 VKQGEVIGKAGQSEFNKEAGIHVHFEIRKDGRAVNPIDYV 214 >Q5KUL2.1 Q5KUL2_GEOKA Stage II sporulation protein Q Length = 295 Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%) Query: 25 KPSSWNRMLSKRWVFPAVYTAAAAIILTLVWVYQDAGQKPLKPDTAAVVSQXXXXXXXXX 84 K SS R+ KRWVFPA+Y ++AA+I+ +Q ++ D A Sbjct: 6 KQSSLKRLFRKRWVFPAIYLSSAALIVAGALWFQLGKEENTGRDNVA-----------KN 54 Query: 85 XSAKDDPAALEVVASAESMVWPVASPADVEVVKPFYDEKGTEENHVAAMVQYNDTFVPNA 144 +A+ + A+ V + E++ PV P V+V PFYD+K +E AA+V Y+ T+ PN Sbjct: 55 GTAQQENPAVPVNETVETIAMPVLDPNAVQVKTPFYDDKASEAEQEAALVFYDHTYHPNQ 114 Query: 145 GIDIAREDNQPFDVKAALSGEVTRVEDVPVFGKVVEITSTGNVKTVYQSLGDTKVKQGDE 204 GID+ R+D + FDV A+LSG VT+ E P+ G VVEI V TVYQSL D KV+ GD Sbjct: 115 GIDLVRQDGKTFDVTASLSGTVTKAEKDPILGYVVEINHEQGVTTVYQSLADVKVEAGDT 174 Query: 205 VKQGDMLATAGRSEIEKNLGNHVHFEVYEDGKLVNPSDLL 244 VKQG+++ AG+SE K G HVHFE+ +DG+ VNP D + Sbjct: 175 VKQGEVIGKAGQSEFNKEAGIHVHFEIRKDGRAVNPIDYV 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,470,170,125 Number of extensions: 57370194 Number of successful extensions: 115307 Number of sequences better than 1.0e-05: 323 Number of HSP's gapped: 117112 Number of HSP's successfully gapped: 323 Length of query: 247 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 115 Effective length of database: 1,817,122,223 Effective search space: 208969055645 Effective search space used: 208969055645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)