BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0322.0003.p (164 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K627.1 B3K627_9BACI Putative uncharacterized protein 144 3e-33 B3K855.1 B3K855_9BACI Putative uncharacterized protein 142 1e-32 A9KJQ8.1 A9KJQ8_CLOPH Putative uncharacterized protein 135 9e-31 B3K6J6.1 B3K6J6_9BACI Putative uncharacterized protein 92 1e-17 C0D5R1.1 C0D5R1_9CLOT Putative uncharacterized protein 79 1e-13 >B3K627.1 B3K627_9BACI Putative uncharacterized protein Length = 178 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 106/162 (65%), Gaps = 7/162 (4%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 LYLHDLS +G N +G+FED + RTL +Q V +IWWEKP L+P+LIR +G Sbjct: 22 LYLHDLSEIWGWKP----NRYGVFEDD-DTRTLYDQNQVFDIWWEKPSVLFPYLIRVEGI 76 Query: 62 PAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGVWELFTNPAAK 121 PAGFALVATPP+ G +++MN+FFV++P+RG+ A+ AA QVFG+ AG WE+ TN + Sbjct: 77 PAGFALVATPPYTF-GSEFYMNEFFVMKPFRGKHVAENAASQVFGKHAGSWEVQTNATDR 135 Query: 122 NVIGQKFWRKTVSDYTN-GIYEEKAGDTFDGYKLSFRFNNAK 162 N Q FWRKT+ +Y + +E D L F+F +++ Sbjct: 136 NKRAQAFWRKTMHNYVSPSRMQEFVATRNDKEMLIFQFVSSR 177 >B3K855.1 B3K855_9BACI Putative uncharacterized protein Length = 178 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/161 (47%), Positives = 102/161 (63%), Gaps = 7/161 (4%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 LYLHD++ +G+ N G+FE +V TL+EQ ++WWE+P L+P+LI DG Sbjct: 22 LYLHDIAEIWGVRP----NRFGVFEKE-DVPTLSEQSKQLDVWWEQPSVLFPYLISVDGI 76 Query: 62 PAGFALVATPPHC-AKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGVWELFTNPAA 120 AG ALVAT P+ + + Y++NDFFVL+ +R QG AQ+AA VF +F G WEL TNP Sbjct: 77 AAGLALVATTPYIPSPNIQYYLNDFFVLRTFRRQGVAQRAAELVFDQFQGAWELQTNPTE 136 Query: 121 KNVIGQKFWRKTVSDYTNGIYEEKAG-DTFDGYKLSFRFNN 160 +N+ Q FWRKT++ YT G Y E G G L FRFNN Sbjct: 137 RNMSTQIFWRKTLNTYTGGRYTEHDGVHPEKGDMLVFRFNN 177 >A9KJQ8.1 A9KJQ8_CLOPH Putative uncharacterized protein Length = 183 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 73/161 (45%), Positives = 95/161 (59%), Gaps = 9/161 (5%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 LYLHDL+G G + NE GIFE+ P +RTL EQYD+Q +W+E LYP+LI D Sbjct: 22 LYLHDLAG----IHGTLPNEFGIFEEEP-IRTLIEQYDIQQVWFENSNLLYPYLILVDHI 76 Query: 62 PAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGVWELFTNPAAK 121 PAGF LV + + K VDY++ + F L P+RG+ + +A L++F G W L T+ Sbjct: 77 PAGFCLVGSGKYVPKEVDYYVYETFFLSPFRGKSISYRAMLEIFKNHHGKWMLLTHSTEN 136 Query: 122 NVIGQKFWRKTVSDYTNGIY--EEKAGDTFDGYKLSFRFNN 160 NV + FW KT+ YTN Y EEK D KL FRF N Sbjct: 137 NVRAKAFWHKTIGQYTNNKYTTEEKIIDGMP--KLVFRFEN 175 >B3K6J6.1 B3K6J6_9BACI Putative uncharacterized protein Length = 167 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 78/142 (54%), Gaps = 17/142 (11%) Query: 2 LYLHDLSGHYGLTDGPVLNEHGIFEDSPEVRTLAEQYDVQNIWWEKPGCLYPFLIRADGR 61 LYL+D + + ++ +N+ G+F P++ + +W+K YPFLI D R Sbjct: 28 LYLYDFTKYLDIS----VNDQGLFLPYPDL----------DEFWKKRERKYPFLITFDQR 73 Query: 62 PAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGVWELFTNPAAK 121 PAGFAL+ + A+ DY+M +FFV+Q YR G AA +F +F G W++ + Sbjct: 74 PAGFALIERMDNAAEA-DYYMTEFFVMQKYRRTGLGTWAATWLFNQFQGRWKV--TQVSS 130 Query: 122 NVIGQKFWRKTVSDYTNGIYEE 143 N+ Q FWRK + YT G YEE Sbjct: 131 NIPAQAFWRKVIESYTGGRYEE 152 >C0D5R1.1 C0D5R1_9CLOT Putative uncharacterized protein Length = 173 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 2/95 (2%) Query: 52 YPFLIRADGRPAGFALVATPPHCAKGVDYFMNDFFVLQPYRGQGYAQQAALQVFGRFAGV 111 YPFLI DG+ AGFALV P DY + +FFV++ YR +G +QAA Q+FGRF G Sbjct: 56 YPFLILVDGKLAGFALVNCYPIVDTEADYTIAEFFVMRKYRKRGVGRQAAFQLFGRFPGK 115 Query: 112 WELFTNPAAKNVIGQKFWRKTVSDYTNGIYEEKAG 146 W+L +N FW + V +YT YE G Sbjct: 116 WQL--KYYLENRASSVFWNRIVGEYTGRAYERLQG 148 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.142 0.460 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,166,947,181 Number of extensions: 48562324 Number of successful extensions: 79883 Number of sequences better than 1.0e-05: 87 Number of HSP's gapped: 79874 Number of HSP's successfully gapped: 87 Length of query: 164 Length of database: 3,060,696,203 Length adjustment: 124 Effective length of query: 40 Effective length of database: 1,892,490,343 Effective search space: 75699613720 Effective search space used: 75699613720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)