BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0320.0016.p (636 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I4S5.1 B8I4S5_CLOCE Methyl-accepting chemotaxis sensory transd... 453 e-125 Q97IP0.1 Q97IP0_CLOAB Methyl-accepting chemotaxis-like protein (... 328 1e-87 A9KHW0.1 A9KHW0_CLOPH Methyl-accepting chemotaxis sensory transd... 248 2e-63 C0FQI3.1 C0FQI3_9FIRM Putative uncharacterized protein 243 4e-62 B8I6I6.1 B8I6I6_CLOCE Methyl-accepting chemotaxis sensory transd... 197 3e-48 >B8I4S5.1 B8I4S5_CLOCE Methyl-accepting chemotaxis sensory transducer Length = 676 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 248/630 (39%), Positives = 382/630 (60%), Gaps = 5/630 (0%) Query: 9 AQTIEAMIDKEKRSMELVAGESEIXXXXXXXXXXXXXXXDP-LRAEVNAKFQQMVKNAGN 67 A+ I MID EK + L+A + I D L+ + A + KN N Sbjct: 50 AENISNMIDTEKSVVSLLASHTSIIELLEQSQSGEQTEQDDHLKGDCMALLKNAEKNKSN 109 Query: 68 LEHIFVADMKGIGIADSDTKLIGADFSERNYTKNVLKTAGPVVSETLKSKSTGAYVLAFI 127 +EH+++ + + + I+D+ +G + S+R Y+ L PV+S+ + S+ TG V F Sbjct: 110 IEHVYIVNTEHVIISDTRHTTLGKNLSDRPYSIQTLSEGKPVISDVITSEETGKNVSEFT 169 Query: 128 HPVMSG-GKMIGFVGSAVNANSIIKYLADAKVANAPSSYAYLVDETGNILYHPDEAKIGS 186 +PV + G ++G+V + V +S + D K+ SSY +L D++ NI+YHPD+ KIG Sbjct: 170 YPVRNADGNLLGYVATTVYMDSFSSVIEDKKILGTKSSYVFLADKSANIVYHPDKNKIGK 229 Query: 187 PLENAQMKAVVERVKAGETVADGNVEYTFNGAEKKAAFTVLPETKWTLVLTGDIDEVMKP 246 P+E Q+K ++ R G+ AD + Y + G +K AA+ + T W LVLTG IDEV+ P Sbjct: 230 PVETPQIKNIINR--PGDKKADV-INYDYKGDKKIAAYETISNTGWLLVLTGTIDEVIAP 286 Query: 247 VNNMTNFXXXXXXXXXXXXXXXXXXXATRISSPIIKLTELINRTAELDLKYDTQYEYLTK 306 V M NF + IS PI K+T +I++T++LD KYD +E K Sbjct: 287 VTTMANFVLRLSIIMILFVSAVGYLISISISKPIEKITHIIHKTSKLDFKYDNSFERYLK 346 Query: 307 NKDETGTIAKAMFHTRAVLREMAGSLVTISTKVLDNAETLEKLSIDVRENAHDNSATTEQ 366 +KDE GTI++A+ R ++ +MA L+ +S ++ +NA+ + L+ DV+ ++ +NSATT++ Sbjct: 347 SKDEIGTISRAISEMREIMHKMADKLIVVSERINNNAQQVSNLADDVKMDSQENSATTQE 406 Query: 367 LSAGMEETAASTQEMTAAIHEVENNVRVISGRVKEGAGVSVQITERALALQHDATESISN 426 LSAG+EE+AAST+E++A+I EVENNV I+ R +EGA +S QITERAL L+ DA +S N Sbjct: 407 LSAGVEESAASTEEISASITEVENNVNAIAQRTREGAYISNQITERALKLKEDALKSSDN 466 Query: 427 TREIYDSVKVEMQKAIEQSDSIHEINVLADTILSITSQTXXXXXXXXXXXXXXXXXXXXX 486 + IY+ VK +++K+IEQS SI +IN+LADTIL IT QT Sbjct: 467 AKSIYEDVKQKIEKSIEQSKSIQQINLLADTILQITDQTNLLALNAAIEAARAGESGKGF 526 Query: 487 XXXXXXIRKLAEKSSETAAGIQDVVKNVYSSVEQMKGNSEAILDFIDQNVLGDYERLAEV 546 IRKLAE+SS+T IQ +V+ V +V+ M NS +IL F+D+ VL DYE+L ++ Sbjct: 527 AVVADEIRKLAEQSSQTVGSIQRMVEEVNQAVKNMNENSASILSFVDEEVLTDYEKLIDI 586 Query: 547 SEQYNSDATAINGLMSQFEEAADHLSETVSSIAIAVNEVATTVNEGAVGVQDIAVKTADI 606 SEQYN+D+ +NGLM++F ++ L+ T+++++ A+NEVA TV E A G+++IA+KT+ I Sbjct: 587 SEQYNNDSNLVNGLMTEFIRTSEELNTTITNVSTAINEVAQTVVESARGIENIAIKTSSI 646 Query: 607 VEKTFHEAKMADENTQSAKEMQRLVEQFKI 636 V K + A EN SAKE+ +V +F++ Sbjct: 647 VVKAEEVHEKASENLGSAKELYDIVSKFEL 676 >Q97IP0.1 Q97IP0_CLOAB Methyl-accepting chemotaxis-like protein (Chemotaxis sensory transducer) Length = 673 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 204/636 (32%), Positives = 330/636 (51%), Gaps = 4/636 (0%) Query: 1 MAQVNTNKAQTIEAMIDKEKRSMELVAGESEIXXXXXXXXXXXXXXXDPLRAEVNAKFQQ 60 M V++ I A+++KE+ LVA + I P E N Q Sbjct: 42 MQSVSSQCIDNINAVVNKEQSVNSLVASRNSIVQLLIKNPDGQSL---PEVTENNEWLQN 98 Query: 61 MVKNAGNLEHIFVADMKGIGIADSDTKLIGADFSERNYTKNVLKTAGPVVSETLKSKSTG 120 VK AGN+ H FV D I+DS+ +G ++++ Y K+ L +S+T S +T Sbjct: 99 YVKKAGNISHTFVLDSNLKDISDSNASFVGKSYADKKYAKDAL-NGKETISDTTISNTTH 157 Query: 121 AYVLAFIHPVMSGGKMIGFVGSAVNANSIIKYLADAKVANAPSSYAYLVDETGNILYHPD 180 ++ F PV+S GK+IG V S+V S K+L + K ++PSSY Y+VDE NILY+ Sbjct: 158 KPIIVFASPVVSNGKVIGVVASSVEGASFSKFLKNVKTYSSPSSYVYMVDEKKNILYNKK 217 Query: 181 EAKIGSPLENAQMKAVVERVKAGETVADGNVEYTFNGAEKKAAFTVLPETKWTLVLTGDI 240 IG P+ N +MK V+ + G VEYT G K + +P KWTLVL Sbjct: 218 TQDIGKPIGNGKMKEVINALSEGNAKTKDFVEYTDKGQSKVVYYYQMPNLKWTLVLVSFK 277 Query: 241 DEVMKPVNNMTNFXXXXXXXXXXXXXXXXXXXATRISSPIIKLTELINRTAELDLKYDTQ 300 E+M N + RI+ PI+ + L + TA+L+L D + Sbjct: 278 SEIMVAPRNTILMSVILSAILAVIACAVGIVLSKRIADPILDIAGLADETAKLNLVIDHK 337 Query: 301 YEYLTKNKDETGTIAKAMFHTRAVLREMAGSLVTISTKVLDNAETLEKLSIDVRENAHDN 360 Y+ KDE G I ++ R R++AG L ++S + NA+ + L+ +++ A + Sbjct: 338 YDKYKNFKDEVGIIFNSVADIRETFRKLAGQLNSVSENINGNADKVFDLTKELKSYADET 397 Query: 361 SATTEQLSAGMEETAASTQEMTAAIHEVENNVRVISGRVKEGAGVSVQITERALALQHDA 420 S TE LSAGMEE +A+ +E++A+ +EV +++ I+ + + + ++ + + ++ D Sbjct: 398 SGETENLSAGMEENSATVEEVSASTNEVNSSISNIAEKAENASELTYNTNKMSSMIKQDV 457 Query: 421 TESISNTREIYDSVKVEMQKAIEQSDSIHEINVLADTILSITSQTXXXXXXXXXXXXXXX 480 S + EIY +VKV ++ AI++S+ + EI+ LA IL IT QT Sbjct: 458 VNSKRSANEIYANVKVGLESAIKKSEVVKEIDNLASAILQITEQTNLLALNAAIEAARAG 517 Query: 481 XXXXXXXXXXXXIRKLAEKSSETAAGIQDVVKNVYSSVEQMKGNSEAILDFIDQNVLGDY 540 +R LAE+SS+ A+ IQ VV+ V SV+++ S +L F+D+NV DY Sbjct: 518 EAGKGFAVVAEEVRTLAEQSSDMASKIQSVVETVNLSVKELNDQSVKLLKFVDENVYKDY 577 Query: 541 ERLAEVSEQYNSDATAINGLMSQFEEAADHLSETVSSIAIAVNEVATTVNEGAVGVQDIA 600 ++ +E Y++DA +NGLMS+F + L+ ++ I+ A++E+A VN GA+GV +IA Sbjct: 578 DKFINSAETYSADAEKVNGLMSEFSTTSKQLNSSIDGISKAISEIAIVVNNGAIGVGNIA 637 Query: 601 VKTADIVEKTFHEAKMADENTQSAKEMQRLVEQFKI 636 K+ +IVEK + + N SA E+ ++ +FK+ Sbjct: 638 EKSLNIVEKVKFIEESVENNKNSANELSNIISRFKV 673 >A9KHW0.1 A9KHW0_CLOPH Methyl-accepting chemotaxis sensory transducer Length = 580 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 244/475 (51%) Query: 162 PSSYAYLVDETGNILYHPDEAKIGSPLENAQMKAVVERVKAGETVADGNVEYTFNGAEKK 221 PSSYAY+VD G +LYHP E+K+G +EN+ +K +VE++ G + + Y F G +K Sbjct: 106 PSSYAYVVDRDGVMLYHPTESKVGMQVENSVVKGIVEQLNQGIIPENNTINYEFQGVKKY 165 Query: 222 AAFTVLPETKWTLVLTGDIDEVMKPVNNMTNFXXXXXXXXXXXXXXXXXXXATRISSPII 281 A + + LVLT D ++M P A ++ P I Sbjct: 166 AGYYISGVDNSILVLTADESDIMLPREEFNRSMIYGNIFILAVATLIGAIIAYLLAKPTI 225 Query: 282 KLTELINRTAELDLKYDTQYEYLTKNKDETGTIAKAMFHTRAVLREMAGSLVTISTKVLD 341 +T +NR + LD D + L ++DE G +++++ R + + SL S ++ + Sbjct: 226 IITNAVNRISNLDFSEDESQKKLNGHRDEFGEMSRSIGKMRDNIIGVIESLTNASDRIGN 285 Query: 342 NAETLEKLSIDVRENAHDNSATTEQLSAGMEETAASTQEMTAAIHEVENNVRVISGRVKE 401 NAE L + S +V EN+ DNSATTE+++AG+EETAA+T+ + I +E N + I+ +E Sbjct: 286 NAEVLSRFSNEVNENSSDNSATTEEIAAGIEETAATTESINTNIIHIEGNTKEINLLTEE 345 Query: 402 GAGVSVQITERALALQHDATESISNTREIYDSVKVEMQKAIEQSDSIHEINVLADTILSI 461 G ++ I RA L + + T+++Y+ VKV AI++S S+ I L+ I+ I Sbjct: 346 GKSMAQDIMLRAKELHSNMEHASDLTKQMYEEVKVRTTIAIDKSKSVERIQALSKAIMDI 405 Query: 462 TSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKLAEKSSETAAGIQDVVKNVYSSVEQM 521 SQT I LA +S+ I D+V+ V SV M Sbjct: 406 ASQTSLLSLNASIEAARAGESGRGFAVVASEIGNLANQSTRAVKDITDIVEEVQDSVNNM 465 Query: 522 KGNSEAILDFIDQNVLGDYERLAEVSEQYNSDATAINGLMSQFEEAADHLSETVSSIAIA 581 LDF+++ VL DY + VS QY+ DA N MS + L T+ +IA A Sbjct: 466 VDCLSKTLDFLEKTVLNDYTEFSNVSTQYSDDALKFNDSMSIINTSISGLQTTIKNIAEA 525 Query: 582 VNEVATTVNEGAVGVQDIAVKTADIVEKTFHEAKMADENTQSAKEMQRLVEQFKI 636 +N + TV+E A G+ DIA KT++ VE T ++ E+ Q AK++Q++VEQFKI Sbjct: 526 INGINDTVSEAATGINDIAHKTSNTVELTGKTTEIVSESMQHAKDLQKIVEQFKI 580 >C0FQI3.1 C0FQI3_9FIRM Putative uncharacterized protein Length = 563 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 157/484 (32%), Positives = 244/484 (50%), Gaps = 1/484 (0%) Query: 153 LADAKVANAPSSYAYLVDETGNILYHPDEAKIGSPLENAQMKAVVERVKAGETVADGNVE 212 + D ++ S+Y YLVD G +LYHP KIG +EN +K VV ++++G D V Sbjct: 80 MQDMRMEGVSSAYGYLVDSDGTMLYHPTADKIGKSVENEVVKGVVSQLQSGNIPQDAVVT 139 Query: 213 YTFNGAEKKAAFTVLPETKWTLVLTGDIDEVMKPVNNMTNFXXXXXXXXXXXXXXXXXXX 272 Y FNG K AA+ + + K +V++ D E+M+P+ NM Sbjct: 140 YNFNGTVKYAAYALTSDHKI-VVMSADKGEIMEPITNMVRLMQITTGVCLIICCLAALVL 198 Query: 273 ATRISSPIIKLTELINRTAELDLKYDTQYEYLTKNKDETGTIAKAMFHTRAVLREMAGSL 332 I+ PI +LT +I RTA D ++ L KDE G +A M R LR+M S+ Sbjct: 199 TNMITKPIHQLTYIITRTANFDFTHNANSRRLYSRKDEIGIMAAEMHIMRKNLRDMVASI 258 Query: 333 VTISTKVLDNAETLEKLSIDVRENAHDNSATTEQLSAGMEETAASTQEMTAAIHEVENNV 392 K+ +N L +++ V + DNSAT++QL+AGM+ETAA+T + + +++ Sbjct: 259 QDAGQKINENVSELNEVTDTVNQMCSDNSATSQQLAAGMQETAATTVTINENVSQIKGEA 318 Query: 393 RVISGRVKEGAGVSVQITERALALQHDATESISNTREIYDSVKVEMQKAIEQSDSIHEIN 452 I+ +EGA S + +RAL L+ + + T EIY+SVK + +KAIE S ++ +IN Sbjct: 319 ETINTMAEEGAKNSETVMDRALQLRTKTVTASNKTMEIYNSVKEKAEKAIEGSKAVEKIN 378 Query: 453 VLADTILSITSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKLAEKSSETAAGIQDVVK 512 L TI+ I+SQT I LA+++S+ A I +VK Sbjct: 379 ELTGTIMEISSQTGLLALNASIEAARAGEAGKGFAVVATEIGSLADQTSQAIANISAIVK 438 Query: 513 NVYSSVEQMKGNSEAILDFIDQNVLGDYERLAEVSEQYNSDATAINGLMSQFEEAADHLS 572 V +V M E +F++++V DY+ +VSEQY DA M + + L+ Sbjct: 439 EVNEAVGNMSECLEETTEFLEKSVSADYKEFEQVSEQYKDDANVFKSSMEGIKTSMAQLA 498 Query: 573 ETVSSIAIAVNEVATTVNEGAVGVQDIAVKTADIVEKTFHEAKMADENTQSAKEMQRLVE 632 + IA A++ + TV E +VGV DIA KT+ +VEKT E Q E++ +V Sbjct: 499 GAIEQIASALSGINDTVGESSVGVTDIAEKTSGMVEKTSSATDKVKECYQCVDELRDIVT 558 Query: 633 QFKI 636 +F + Sbjct: 559 KFTL 562 >B8I6I6.1 B8I6I6_CLOCE Methyl-accepting chemotaxis sensory transducer Length = 414 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 200/332 (60%) Query: 276 ISSPIIKLTELINRTAELDLKYDTQYEYLTKNKDETGTIAKAMFHTRAVLREMAGSLVTI 335 ++ PI L+ ++ RTA DL +D Y + KDE G +A+ + R LRE+ G + Sbjct: 54 LTVPIKVLSRVVERTANFDLSHDKTYNQIKGRKDEIGFLARNLSTMRGSLREILGLMGDA 113 Query: 336 STKVLDNAETLEKLSIDVRENAHDNSATTEQLSAGMEETAASTQEMTAAIHEVENNVRVI 395 S KV++N++ +E+++ D++E A D +TTE +SA M+E+AA++ ++ + E++ N+ +I Sbjct: 114 SKKVIENSQQVEQMTEDLKEKADDTLSTTEHISASMQESAATSHQINFSTQEIKKNINLI 173 Query: 396 SGRVKEGAGVSVQITERALALQHDATESISNTREIYDSVKVEMQKAIEQSDSIHEINVLA 455 + +EGA + +++ +A ++ A S N +Y VK ++Q AI+++ + I+ LA Sbjct: 174 AQNSEEGAQTANEVSIKASEIKESAVLSAQNANNVYLEVKQQLQGAIDKAGEVSHIDQLA 233 Query: 456 DTILSITSQTXXXXXXXXXXXXXXXXXXXXXXXXXXXIRKLAEKSSETAAGIQDVVKNVY 515 IL IT QT IRKLA++SS+TAA I+++VK V Sbjct: 234 QAILQITEQTNLLSLNAAIEAARAGEAGKGFAVVADEIRKLADQSSKTAADIKNIVKTVN 293 Query: 516 SSVEQMKGNSEAILDFIDQNVLGDYERLAEVSEQYNSDATAINGLMSQFEEAADHLSETV 575 SV+ + ++ +L+F+D+ VL DY++L + SEQY +D+ + +M++F ++A ++ ++ Sbjct: 294 ESVDALTDSAGVLLEFVDKEVLNDYKKLIDTSEQYYTDSAQFSKIMNEFNDSAKAMNSSI 353 Query: 576 SSIAIAVNEVATTVNEGAVGVQDIAVKTADIV 607 ++I A+ +V ++VNE A GV+ I VKTA+IV Sbjct: 354 ANIVNALEQVTSSVNESAEGVEVITVKTAEIV 385 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.125 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,817,295,044 Number of extensions: 101591157 Number of successful extensions: 364475 Number of sequences better than 1.0e-05: 3089 Number of HSP's gapped: 359743 Number of HSP's successfully gapped: 3121 Length of query: 636 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 494 Effective length of database: 1,722,912,073 Effective search space: 851118564062 Effective search space used: 851118564062 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 135 (56.6 bits)