BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0320.0015.p (447 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K421.1 B3K421_9BACI Response regulator receiver 128 1e-27 B1D5Z5.1 B1D5Z5_9BACL Two component transcriptional regulator, A... 93 7e-17 B3KF21.1 B3KF21_9BACI Response regulator receiver 84 2e-14 B0K339.1 B0K339_THEPX Response regulator receiver protein 84 2e-14 Q893H5.1 Q893H5_CLOTE Transcriptional regulatory protein 84 3e-14 >B3K421.1 B3K421_9BACI Response regulator receiver Length = 532 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 115/410 (28%), Positives = 186/410 (45%), Gaps = 18/410 (4%) Query: 36 QNQRVPDHGNL---RKNDQVQLLQESFLLQMVRDDWPNLTVIRERLQQLGLAPLAADDLR 92 +N++V D + R + + ++E FLL +VR D + ER++ L D R Sbjct: 125 KNRKVRDDSEMLQWRLSQYYKEMKERFLLDLVRGDRLPSASMPERIRLFHLEDW--QDGR 182 Query: 93 LQCAAAEMRMTSEISADRRERRNLLNLAFQKLCRETSSDYKG-IYPFGSVADSAMMYFLV 151 + A MR + A L L FQ +C E + Y G + F A +M+F+ Sbjct: 183 VCFITAGMRESGMQKAPEGRAPEQLRLPFQMVCHEIAESYPGGVQVFHDAAHPGIMHFIA 242 Query: 152 ILKPGAEHVRKTRRFMEQLNHSVASELKMECVSGIGGEVKGLKRLKNSYASCMLPWTRSG 211 + G +H F ++L +S L +E G+G V GL+R K Y +L W +G Sbjct: 243 L--DGIQHA-----FADKLVAQASSYLTVEVQVGLGLPVSGLERWKEGYIHSLLAWNLAG 295 Query: 212 SGKEGDVRYRDLELAPAFTPEIERKLKRAIENPDMHGFRQQLD-SLMNNERDTPVVTFXX 270 + G + + +P E R L R + ++ FR + L + R +P Sbjct: 296 R-QNGPDQAPVTDQSPLLPDETSRALHRCLIRGELESFRSIIRRELGESFRLSPARLVRS 354 Query: 271 XXXXXXXXSIAKKFELGSSSLQRYIWNSRMPIVNARSHDEVRRLLDELAQLVMEEVKKVR 330 A + S +W S ++ + ++ RLL + AQ ++ + + Sbjct: 355 LFQITLIMESAAFDNIRHSRGGGPLWISPEWVLWLETPEQAERLLMQWAQDFVDNLTESG 414 Query: 331 FSDGWHLIEAVRKYAGENFCCRLEISSLAEMFYLNEADLPRQFKQHVGITFSDYITKLRM 390 D LIE+ ++Y EN+ L ++SLAE + + FK+ G++F Y+T++RM Sbjct: 415 DRDA-TLIESAKRYIEENYMQELSLTSLAEQYNYHPTYFSEMFKEGAGVSFIQYVTEVRM 473 Query: 391 TKAEQLLQDNGLKVGDIARLAGYSGFSGFSTAFKKYSGQSPKEYRERLSQ 440 A +LLQ+ L V DIA L G+S FS+ FKK QSP E+ RLSQ Sbjct: 474 KHAVRLLQETRLTVWDIAELTGFSSPGYFSSKFKKMFNQSPSEF--RLSQ 521 >B1D5Z5.1 B1D5Z5_9BACL Two component transcriptional regulator, AraC family Length = 535 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 96/455 (21%), Positives = 194/455 (42%), Gaps = 40/455 (8%) Query: 3 IKMRDYLPRPEAYVYEELHELPGNPGREFGSKAQNQRVPDHGNLRKNDQVQLLQESFLLQ 62 I ++DYL +P EEL +L E ++R N+ N+ Q ++ F+ + Sbjct: 97 IGVQDYLLKPVGA--EELVDLMLKLSEEIKLAEADKRNRQSLNMMINENYQTIKSDFINR 154 Query: 63 MVRDDWPNLTVIRERLQQL---------GLAPLAADDLRLQCAAAEMRMTSEISADRRE- 112 +++ + + I ++ + L + + DD L MT ++ ++RE Sbjct: 155 ILQGGVTDSSAIFDKAELLKIRLSGPEYSILAIDIDDFAL--------MTEDLPENKREL 206 Query: 113 -RRNLLNLAFQKLCRETSSDYKGIYPFGSVADSAMMYFLVILKPGAEHVRKTRRFMEQLN 171 R +++N+A + L T G V S + + ++ G E++ Sbjct: 207 IRFSVMNIAEEVLLSRTQ---------GLVCYSQFDHLIGMMSGGGLRADFVDHVCEEIQ 257 Query: 172 HSVASELKMECVSGIGGEVKGLKRLKNSYASCMLPW-TRSGSGKEGDVRYRD----LELA 226 +V + LK+ GI + L SYA + GK +RY++ E+ Sbjct: 258 QAVKTYLKLSISIGISRNCTDIAVLSTSYAEAFSALKAKIHKGKGSLIRYQESMMSTEMQ 317 Query: 227 PAFTPEIERKLK----RAIENPDMH-GFRQQLDSLMNNERDTPVVTFXXXXXXXXXXSIA 281 P E K+ + + + ++H Q D + D PV+ S Sbjct: 318 NVLYPSEEEKVIIGCLKTLNSSELHSAIDQIFDRFAAGQTDAPVIRSICGRLLLMAVSGV 377 Query: 282 KKFELGSSSLQRYIWNSRMPIVNARSHDEVRRLLDELAQLVMEEVKKVRFSDGWHLIEAV 341 ++ + S+ +N + + ++R+ ++++ + E V++ + +I+ Sbjct: 378 EEMSVDVGSIIGTNFNPYREMERFDTLGDLRKWMNDVLHRLSELVQENKNQKFKGVIKTA 437 Query: 342 RKYAGENFCCRLEISSLAEMFYLNEADLPRQFKQHVGITFSDYITKLRMTKAEQLLQDNG 401 +Y EN+ + ++ +A + Y+ L R FK+ +G+ F +++ + R+ KA+ LL + G Sbjct: 438 LRYMEENYNRAVSLADVAAIVYVTPNYLSRIFKEEIGVNFVEWLNRYRIEKAKLLLSEPG 497 Query: 402 LKVGDIARLAGYSGFSGFSTAFKKYSGQSPKEYRE 436 K +A GYS + FS FK+++ SPKEY+E Sbjct: 498 AKTYAVAEKVGYSDYKYFSQMFKRFADCSPKEYKE 532 >B3KF21.1 B3KF21_9BACI Response regulator receiver Length = 540 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 64/103 (62%) Query: 336 HLIEAVRKYAGENFCCRLEISSLAEMFYLNEADLPRQFKQHVGITFSDYITKLRMTKAEQ 395 H+I+ V +Y E+ + + LAE +Y N + L R FKQ GI S+YI K R+ +A++ Sbjct: 436 HVIDRVCQYIEEHLDQDVTLVHLAERYYFNPSYLSRLFKQERGINISEYIEKCRIRRAKE 495 Query: 396 LLQDNGLKVGDIARLAGYSGFSGFSTAFKKYSGQSPKEYRERL 438 LL++ LKV D+A L GY F+ FKK +G +P+EYR+ L Sbjct: 496 LLKEGDLKVRDVAPLVGYDAAHSFTRFFKKATGLTPQEYRDNL 538 >B0K339.1 B0K339_THEPX Response regulator receiver protein Length = 365 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 76/133 (57%), Gaps = 1/133 (0%) Query: 307 SHDEVRRLLDELAQLVMEEVKKVRFSDGWHLIEAVRKYAGENFC-CRLEISSLAEMFYLN 365 + ++ R + + ++V E V + S LI+ K EN+ + ++S+AE Y+ Sbjct: 232 TKEKFREWMRNIIEVVCEYVSLTKNSKNRKLIDEAIKLIQENYSDLNISLNSIAEKLYIT 291 Query: 366 EADLPRQFKQHVGITFSDYITKLRMTKAEQLLQDNGLKVGDIARLAGYSGFSGFSTAFKK 425 L FK +G+TFSDY+T R+ KA++LL+D +K+ ++A GY+ FS FK Sbjct: 292 PNYLSTLFKSEMGVTFSDYLTACRIEKAKELLKDVKVKIYEVAEAVGYTDQHYFSKVFKN 351 Query: 426 YSGQSPKEYRERL 438 +G +PKEYRE++ Sbjct: 352 ITGFTPKEYREKI 364 >Q893H5.1 Q893H5_CLOTE Transcriptional regulatory protein Length = 259 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 68/258 (26%), Positives = 123/258 (47%), Gaps = 34/258 (13%) Query: 192 GLKRLKNSYASCMLPWTRSGSGKEGDVRYRDLELAPAFTPEIERKLKRAIENPDMHGFRQ 251 GLK L SY + + G+E +++ + PEI + I P M+G Sbjct: 16 GLKNLIESYELNLSVIATAKDGEEA------MKVIEKYHPEI---ILMDINMPFMNGL-D 65 Query: 252 QLDSLMNNERDTPVVTFXXXXXXXXXXSIAKKFELGSSSLQRYIWNSRMPIVNARSHDEV 311 + + +D ++ S +FE +L+ ++N + +N R ++ Sbjct: 66 VIKGIHERNKDAKIIII----------SGYSQFEYAQKALELGVFNYLLKPINYRDFKDI 115 Query: 312 R-RLLDELAQLVMEEVKKVRFSDGWHLIEAVR-------KYAGENFCCR-LEISSLAEMF 362 + +D ++ M E+ K++ +G IE+ + Y +NF + ++ +A+ F Sbjct: 116 LIKAMDSYSKR-MWEISKIK--EGKEKIESCKDVGNLAISYIKKNFSNNEISLNLVAQQF 172 Query: 363 YLNEADLPRQFKQHVGITFSDYITKLRMTKAEQLLQDNG--LKVGDIARLAGYSGFSGFS 420 Y++++ L R KQ G++F+DY+ KLR+ A++LL DN + DI+ + GYS FS Sbjct: 173 YISQSYLTRVIKQKTGVSFTDYLNKLRINMAKKLLTDNNNDYTINDISNMVGYSSQHYFS 232 Query: 421 TAFKKYSGQSPKEYRERL 438 AFK Y SPK YR ++ Sbjct: 233 RAFKNYMEISPKNYRNKV 250 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,495,816,662 Number of extensions: 97818470 Number of successful extensions: 259659 Number of sequences better than 1.0e-05: 2461 Number of HSP's gapped: 261284 Number of HSP's successfully gapped: 2462 Length of query: 447 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 308 Effective length of database: 1,751,175,118 Effective search space: 539361936344 Effective search space used: 539361936344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)