BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0320.0013.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKX7.1 B3KKX7_9BACI Putative uncharacterized protein                135   2e-30
Q2B598.1 Q2B598_9BACI Putative uncharacterized protein                106   9e-22
C2WZJ4.1 C2WZJ4_BACCE Putative uncharacterized protein                 98   2e-19
C2VA88.1 C2VA88_BACCE Putative uncharacterized protein                 98   2e-19
C2UTT6.1 C2UTT6_BACCE Putative uncharacterized protein                 98   2e-19

>B3KKX7.1 B3KKX7_9BACI Putative uncharacterized protein
          Length = 89

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/87 (67%), Positives = 73/87 (83%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKY+NADI+LPE+LLKEVQKY+ GGM+Y+PKPEG++ KWGENSG R YL  RN EIR+ +
Sbjct: 1  MKYINADIILPEELLKEVQKYVQGGMVYIPKPEGLRKKWGENSGSRVYLKKRNLEIRQLF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
           +G  I+ L+ Q+CLSCDSIKKIVY K
Sbjct: 61 ASGATIDQLSSQYCLSCDSIKKIVYTK 87


>Q2B598.1 Q2B598_9BACI Putative uncharacterized protein
          Length = 92

 Score =  106 bits (264), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 64/88 (72%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          M YV A  VLPE+L+ E+QKYI G M+Y+PKPE  + KWGE+SGGR  +  RN EIR  +
Sbjct: 1  MSYVKAAAVLPEELIAEIQKYIQGEMIYIPKPEAARQKWGESSGGRKQIDARNEEIRMAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGKK 88
          R G  +E LAE++ L+ ++IKKIVY K+
Sbjct: 61 RNGKPVEVLAEEYFLANETIKKIVYSKQ 88


>C2WZJ4.1 C2WZJ4_BACCE Putative uncharacterized protein
          Length = 87

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 59/87 (67%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKYV A  VLPE L+ E+QKYI G  +Y+PK E    KWG  SGGR  L  RNN I+  +
Sbjct: 1  MKYVKAAAVLPESLIAEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDERNNAIKAAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          ++G+ I  LAE++ LS ++IKKIVY K
Sbjct: 61 KSGIAIHQLAEEYFLSRETIKKIVYSK 87


>C2VA88.1 C2VA88_BACCE Putative uncharacterized protein
          Length = 87

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 59/87 (67%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKYV A  VLPE L+ E+QKYI G  +Y+PK E    KWG  SGGR  L  RNN I+  +
Sbjct: 1  MKYVKAAAVLPESLIAEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDERNNAIKAAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          ++G+ I  LAE++ LS ++IKKIVY K
Sbjct: 61 KSGIAIHQLAEEYFLSGETIKKIVYSK 87


>C2UTT6.1 C2UTT6_BACCE Putative uncharacterized protein
          Length = 87

 Score = 98.2 bits (243), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 59/87 (67%)

Query: 1  MKYVNADIVLPEDLLKEVQKYIHGGMLYVPKPEGIKAKWGENSGGRAYLTHRNNEIRKQY 60
          MKYV A  VLPE L+ E+QKYI G  +Y+PK E    KWG  SGGR  L  RNN I+  +
Sbjct: 1  MKYVKAAAVLPESLIAEIQKYIQGETIYIPKQETKHYKWGTRSGGRKQLDERNNAIKAAF 60

Query: 61 RAGLGIEHLAEQFCLSCDSIKKIVYGK 87
          ++G+ I  LAE++ LS ++IKKIVY K
Sbjct: 61 KSGIAIHQLAEEYFLSGETIKKIVYSK 87


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 592,667,279
Number of extensions: 23587468
Number of successful extensions: 48507
Number of sequences better than 1.0e-05: 174
Number of HSP's gapped: 48498
Number of HSP's successfully gapped: 174
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)