BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0320.0007.p (479 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BT82.1 C3BT82_9BACI ATP-dependent RNA helicase dbpA 673 0.0 C3BB57.1 C3BB57_BACMY ATP-dependent RNA helicase dbpA 671 0.0 C3ATT1.1 C3ATT1_BACMY ATP-dependent RNA helicase dbpA 669 0.0 C2WF46.1 C2WF46_BACCE ATP-dependent RNA helicase dbpA 669 0.0 C2QKH5.1 C2QKH5_BACCE ATP-dependent RNA helicase dbpA 658 0.0 >C3BT82.1 C3BT82_9BACI ATP-dependent RNA helicase dbpA Length = 481 Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/476 (67%), Positives = 385/476 (80%) Query: 4 FRDYGLNEEIIRALDVLNYLEPTEVQSMVIPAALKGQDLIVKSQTGSGKTASFAIPLCEL 63 F++Y L++EI+RAL L Y +PTEVQ VIP AL+ +DL+VKSQTGSGKTASF IPLCE+ Sbjct: 6 FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 64 ADWAENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKTELAQKTHI 123 +W ENKPQAL+LTPTRELAAQVKEDITNIGRFKRIKA A++GK PFA QK EL QKTHI Sbjct: 66 VEWEENKPQALILTPTRELAAQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQKTHI 125 Query: 124 VVGTPGRVFDHIGRGTLPLSRIRYLVIDEADEMLSMGFIEQIEQIIEKLPRERMTMLFSA 183 VVGTPGRV DHI +GT L R++YLVIDEADEML+MGFI+Q+E II++LP +RMTMLFSA Sbjct: 126 VVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSA 185 Query: 184 TLPDAVKSLCLKYMRGPVDIEIEASGITTAAIEHALIEVRQAAKFGLLLDVLAVENPDSC 243 TLP+ V++L YM+ P IEI+ASGITT IEH L+EVR+ KF LL D+ +ENPDSC Sbjct: 186 TLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSC 245 Query: 244 IIFCRTQEQVNELFRSMADLEYPVDKIHGGMMQDERFEVMNAFKRGRFRYLIATDVAARG 303 IIFCRTQE V+ +FR + YP DKIHGGM+Q++RF VMN FKRG+FRYL+ATDVAARG Sbjct: 246 IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARG 305 Query: 304 IDIENITHVINYDIPMEKESYVHRTGRTARAGKSGKAITFATPDEHKWVGEIERYIGFSL 363 IDIENITHVINYDIP+EKESYVHRTGRT RAG SGKAITF TP E +++ EIE YIGF + Sbjct: 306 IDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEIEEYIGFEI 365 Query: 364 PVMKAPSEDAVADAKPAFEAKLGKQQVRKKGKTEVMNEDIVKLYFNGGKKKKLRAVDFVG 423 ++APS++ +A K AFE K+ + + KK K+ +N+DI+KLYFNGGKKKK+RAVDFVG Sbjct: 366 QKIEAPSKEELAKGKAAFEDKINAKPIMKKEKSAGLNKDIMKLYFNGGKKKKIRAVDFVG 425 Query: 424 TIAKLEXXXXXXXXXXXXQDNVTYVDILNGKGAQVLQAMKDTTVKGKLLKVHVAKK 479 TIAK+ QDNV+YVDILNGKG VL+ MK+TT+KGK LKVH A K Sbjct: 426 TIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKVHEAIK 481 >C3BB57.1 C3BB57_BACMY ATP-dependent RNA helicase dbpA Length = 481 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/476 (67%), Positives = 384/476 (80%) Query: 4 FRDYGLNEEIIRALDVLNYLEPTEVQSMVIPAALKGQDLIVKSQTGSGKTASFAIPLCEL 63 F++Y L++EI+RAL L Y +PTEVQ VIP AL+ +DL+VKSQTGSGKTASF IPLCE+ Sbjct: 6 FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 64 ADWAENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKTELAQKTHI 123 +W ENKPQAL+LTPTRELA QVKEDITNIGRFKRIKA A++GK PFA QK EL QKTHI Sbjct: 66 IEWEENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFARQKLELKQKTHI 125 Query: 124 VVGTPGRVFDHIGRGTLPLSRIRYLVIDEADEMLSMGFIEQIEQIIEKLPRERMTMLFSA 183 VVGTPGRV DHI +GT L R++YLVIDEADEML+MGFI+Q+E II++LP +RMTMLFSA Sbjct: 126 VVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSA 185 Query: 184 TLPDAVKSLCLKYMRGPVDIEIEASGITTAAIEHALIEVRQAAKFGLLLDVLAVENPDSC 243 TLP+ V++L YM+ P IEI+ASGITT IEH L+EVR+ KF LL D+ +ENPDSC Sbjct: 186 TLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSC 245 Query: 244 IIFCRTQEQVNELFRSMADLEYPVDKIHGGMMQDERFEVMNAFKRGRFRYLIATDVAARG 303 IIFCRTQE V+ +FR + YP DKIHGGM+Q++RF VMN FKRG+FRYL+ATDVAARG Sbjct: 246 IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARG 305 Query: 304 IDIENITHVINYDIPMEKESYVHRTGRTARAGKSGKAITFATPDEHKWVGEIERYIGFSL 363 IDIENITHVINYDIP+EKESYVHRTGRT RAG SGKAITF TP E +++ EIE YIGF + Sbjct: 306 IDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEIEEYIGFEI 365 Query: 364 PVMKAPSEDAVADAKPAFEAKLGKQQVRKKGKTEVMNEDIVKLYFNGGKKKKLRAVDFVG 423 ++APS++ +A K AFE K+ + + KK K+ +N+DI+KLYFNGGKKKK+RAVDFVG Sbjct: 366 QKIEAPSKEELAKGKVAFEDKINAKPIMKKEKSAGLNKDIMKLYFNGGKKKKIRAVDFVG 425 Query: 424 TIAKLEXXXXXXXXXXXXQDNVTYVDILNGKGAQVLQAMKDTTVKGKLLKVHVAKK 479 TIAK+ QDNV+YVDILNGKG VL+ MK+TT+KGK LKVH A K Sbjct: 426 TIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKVHEAIK 481 >C3ATT1.1 C3ATT1_BACMY ATP-dependent RNA helicase dbpA Length = 481 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/476 (67%), Positives = 383/476 (80%) Query: 4 FRDYGLNEEIIRALDVLNYLEPTEVQSMVIPAALKGQDLIVKSQTGSGKTASFAIPLCEL 63 F++Y L++EI+RAL L Y +PTEVQ VIP AL+ +DL+VKSQTGSGKTASF IPLCE+ Sbjct: 6 FKEYALSKEIVRALTSLKYEQPTEVQGKVIPVALEKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 64 ADWAENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKTELAQKTHI 123 +W ENKPQAL+LTPTRELA QVKEDITNIGRFKRIKA A++GK PF QK EL QKTHI Sbjct: 66 VEWEENKPQALILTPTRELAVQVKEDITNIGRFKRIKATAVYGKSPFVRQKLELKQKTHI 125 Query: 124 VVGTPGRVFDHIGRGTLPLSRIRYLVIDEADEMLSMGFIEQIEQIIEKLPRERMTMLFSA 183 VVGTPGRV DHI +GT L R++YLVIDEADEML+MGFI+Q+E II++LP +RMTMLFSA Sbjct: 126 VVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTDRMTMLFSA 185 Query: 184 TLPDAVKSLCLKYMRGPVDIEIEASGITTAAIEHALIEVRQAAKFGLLLDVLAVENPDSC 243 TLP+ V++L YM+ P IEI+ASGITT IEH L+EVR+ KF LL D+ +ENPDSC Sbjct: 186 TLPEDVENLSHTYMKSPTHIEIKASGITTDKIEHILLEVREEEKFSLLQDITTLENPDSC 245 Query: 244 IIFCRTQEQVNELFRSMADLEYPVDKIHGGMMQDERFEVMNAFKRGRFRYLIATDVAARG 303 IIFCRTQE V+ +FR + YP DKIHGGM+Q++RF VMN FKRG+FRYL+ATDVAARG Sbjct: 246 IIFCRTQENVDHVFRQLKRSGYPCDKIHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARG 305 Query: 304 IDIENITHVINYDIPMEKESYVHRTGRTARAGKSGKAITFATPDEHKWVGEIERYIGFSL 363 IDIENITHVINYDIP+EKESYVHRTGRT RAG SGKAITF TP E +++ EIE YIGF + Sbjct: 306 IDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFVTPYEERFLVEIEEYIGFEI 365 Query: 364 PVMKAPSEDAVADAKPAFEAKLGKQQVRKKGKTEVMNEDIVKLYFNGGKKKKLRAVDFVG 423 ++APS++ +A K AFE K+ + + KK K+ +N+DI+KLYFNGGKKKK+RAVDFVG Sbjct: 366 QKIEAPSKEELAKGKVAFEDKINAKPIMKKEKSAGLNKDIMKLYFNGGKKKKIRAVDFVG 425 Query: 424 TIAKLEXXXXXXXXXXXXQDNVTYVDILNGKGAQVLQAMKDTTVKGKLLKVHVAKK 479 TIAK+ QDNV+YVDILNGKG VL+ MK+TT+KGK LKVH A K Sbjct: 426 TIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKVHEAIK 481 >C2WF46.1 C2WF46_BACCE ATP-dependent RNA helicase dbpA Length = 481 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/476 (67%), Positives = 382/476 (80%) Query: 4 FRDYGLNEEIIRALDVLNYLEPTEVQSMVIPAALKGQDLIVKSQTGSGKTASFAIPLCEL 63 F++Y L+ EIIRAL L Y +PTEVQ VIP AL+ +DL+VKSQTGSGKTASF IPLCE+ Sbjct: 6 FKEYALSGEIIRALTSLKYEQPTEVQGKVIPIALERKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 64 ADWAENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKTELAQKTHI 123 +W ENKPQAL+LTPTRELAAQVKEDITNIGRFKRIKA A++GK PFA QK EL QKTHI Sbjct: 66 VEWEENKPQALILTPTRELAAQVKEDITNIGRFKRIKATAIYGKSPFARQKLELKQKTHI 125 Query: 124 VVGTPGRVFDHIGRGTLPLSRIRYLVIDEADEMLSMGFIEQIEQIIEKLPRERMTMLFSA 183 VVGTPGRV DHI +GT L R++YLVIDEADEML+MGFI+Q+E II++LP RMTMLFSA Sbjct: 126 VVGTPGRVLDHIEKGTFSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTNRMTMLFSA 185 Query: 184 TLPDAVKSLCLKYMRGPVDIEIEASGITTAAIEHALIEVRQAAKFGLLLDVLAVENPDSC 243 TLP+ V++L YM P++IEI ASGITT IEH ++EVR+ KF LL D+ VE+PDSC Sbjct: 186 TLPEDVENLSRTYMESPINIEITASGITTDKIEHRILEVREEEKFSLLKDITTVESPDSC 245 Query: 244 IIFCRTQEQVNELFRSMADLEYPVDKIHGGMMQDERFEVMNAFKRGRFRYLIATDVAARG 303 IIFCRTQE V+ +FR + YP DK+HGGM+Q++RF VMN FKRG+FRYL+ATDVAARG Sbjct: 246 IIFCRTQENVDHVFRQLKRSSYPCDKLHGGMIQEDRFAVMNDFKRGKFRYLVATDVAARG 305 Query: 304 IDIENITHVINYDIPMEKESYVHRTGRTARAGKSGKAITFATPDEHKWVGEIERYIGFSL 363 IDIENITHVINYDIP+EKESYVHRTGRT RAG SGKAITF TP E +++ EIE YIGF + Sbjct: 306 IDIENITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEERFLAEIEEYIGFEI 365 Query: 364 PVMKAPSEDAVADAKPAFEAKLGKQQVRKKGKTEVMNEDIVKLYFNGGKKKKLRAVDFVG 423 ++APS+++V K AFE K+ + + KK K+ +N+ I+KLYFNGGKKKK+RAVDFVG Sbjct: 366 QKIEAPSKESVVKKKAAFEEKINSKPIMKKEKSAGLNKGIMKLYFNGGKKKKIRAVDFVG 425 Query: 424 TIAKLEXXXXXXXXXXXXQDNVTYVDILNGKGAQVLQAMKDTTVKGKLLKVHVAKK 479 TIAK+ QDNV+YVDILNGKG VL+ MK+TT+KGK LKVH A K Sbjct: 426 TIAKIPGVTADDIGIITIQDNVSYVDILNGKGPLVLKVMKNTTIKGKQLKVHEAIK 481 >C2QKH5.1 C2QKH5_BACCE ATP-dependent RNA helicase dbpA Length = 481 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/476 (66%), Positives = 380/476 (79%) Query: 4 FRDYGLNEEIIRALDVLNYLEPTEVQSMVIPAALKGQDLIVKSQTGSGKTASFAIPLCEL 63 F +Y LN+EI+RAL L Y PTEVQ VIP AL+ +DL+VKSQTGSGKTASF IPLCE+ Sbjct: 6 FSNYALNKEIVRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65 Query: 64 ADWAENKPQALVLTPTRELAAQVKEDITNIGRFKRIKAVALFGKQPFAPQKTELAQKTHI 123 +W ENKPQALVLTPTRELA QVKEDITNIGRFKRIKA A++GK PFA QK EL QKTHI Sbjct: 66 VEWEENKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAVYGKSPFARQKLELKQKTHI 125 Query: 124 VVGTPGRVFDHIGRGTLPLSRIRYLVIDEADEMLSMGFIEQIEQIIEKLPRERMTMLFSA 183 VVGTPGRV DHI +GTL L R++YLVIDEADEML+MGFI+Q+E II++LP +RMTMLFSA Sbjct: 126 VVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMTMLFSA 185 Query: 184 TLPDAVKSLCLKYMRGPVDIEIEASGITTAAIEHALIEVRQAAKFGLLLDVLAVENPDSC 243 TLP+ V+ L YM P IEI+A+GITT IEH L EV + K LL DV +ENPDSC Sbjct: 186 TLPEDVEKLSRTYMNSPTHIEIKAAGITTDKIEHTLFEVGEEEKLSLLKDVTTIENPDSC 245 Query: 244 IIFCRTQEQVNELFRSMADLEYPVDKIHGGMMQDERFEVMNAFKRGRFRYLIATDVAARG 303 IIFCRTQE V+ ++R + + YP DKIHGGM+Q++RFEVM+ F++G+FRYL+ATDVAARG Sbjct: 246 IIFCRTQENVDHVYRQLKRVNYPCDKIHGGMVQEDRFEVMDDFRKGKFRYLVATDVAARG 305 Query: 304 IDIENITHVINYDIPMEKESYVHRTGRTARAGKSGKAITFATPDEHKWVGEIERYIGFSL 363 IDI+NITHVINYDIP+EKESYVHRTGRT RAGK GKAITF TP E++++ EIE YIGF++ Sbjct: 306 IDIDNITHVINYDIPLEKESYVHRTGRTGRAGKKGKAITFITPYENRFLEEIETYIGFAI 365 Query: 364 PVMKAPSEDAVADAKPAFEAKLGKQQVRKKGKTEVMNEDIVKLYFNGGKKKKLRAVDFVG 423 P +APS++ V K FE K+ + + KK K +N+ I+KLYFNGGKKKK+RAVDFVG Sbjct: 366 PKAQAPSKEEVMKGKAVFEEKIHAKPMIKKDKNADINKGIMKLYFNGGKKKKIRAVDFVG 425 Query: 424 TIAKLEXXXXXXXXXXXXQDNVTYVDILNGKGAQVLQAMKDTTVKGKLLKVHVAKK 479 TIAK++ QDNV+YV+ILNGKG+ VL+ M++TT+KGK LKVH A K Sbjct: 426 TIAKIQGVSAEDIGIITIQDNVSYVEILNGKGSLVLKVMRNTTIKGKQLKVHEAIK 481 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,606,637,679 Number of extensions: 103488130 Number of successful extensions: 315584 Number of sequences better than 1.0e-05: 11553 Number of HSP's gapped: 293461 Number of HSP's successfully gapped: 12246 Length of query: 479 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 339 Effective length of database: 1,741,754,103 Effective search space: 590454640917 Effective search space used: 590454640917 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)