BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0320.0003.p (305 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3A9.1 B3K3A9_9BACI Pyridine nucleotide-disulphide oxidoreductase 306 2e-81 B1D7W2.1 B1D7W2_9BACL Pyridine nucleotide-disulphide oxidoreductase 291 5e-77 B3KF64.1 B3KF64_9BACI Pyridine nucleotide-disulphide oxidoreductase 284 6e-75 A6M208.1 A6M208_CLOB8 Pyridine nucleotide-disulphide oxidoreductase 259 3e-67 B1VSW2.1 B1VSW2_STRGG Putative uncharacterized protein 205 4e-51 >B3K3A9.1 B3K3A9_9BACI Pyridine nucleotide-disulphide oxidoreductase Length = 751 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 148/289 (51%), Positives = 197/289 (68%), Gaps = 2/289 (0%) Query: 14 YRLRQDVAVLFPADPGISG-FELLLDAEQAAEVTAELWDTGRGENYVPHTLQXXXXXXXX 72 Y L +D+AVL PADPG++G L+DAEQ ++T E+W TGR ENYVP L+ Sbjct: 464 YPLERDIAVLMPADPGLAGEVAWLVDAEQETDMTVEVWSTGRPENYVPAALEFRTSVRIM 523 Query: 73 XGQRQWVAFDLQWQXXXXXXNAFVIIKANPAVSLHHSLEPHSGVLVFFKDEQPQVSRDLE 132 GQ QWV L WQ NAF+I++ NP ++L+ S +P SG+L F + +VS++LE Sbjct: 524 PGQGQWVPVQLDWQPAEPQ-NAFIIVRENPDLTLYLSSKPMSGLLAFERGTPARVSKELE 582 Query: 133 DHSTDQLVVLWKMKGQARRPFCFRLSSPTAAFAADKAVNGYHRPYGGPQQWMSEPMEDGK 192 DH Q VV W MKG R+ FC R + + A+ + ++GY RPYGGP W+SE + DG+ Sbjct: 583 DHDDSQPVVEWSMKGLVRKLFCLRSAIGSRAYQPEHVIDGYKRPYGGPHMWVSERIADGE 642 Query: 193 PEWLQLDWDSEQTLGEIHLTFNDDVNEDLVNLHHHRTPFAIIPELVRDYRVEAFGAGGEW 252 WL+L+W Q++ EIHL FNDDVNEDL+NLHHHRTPF IIPELVR YR+EA + G+W Sbjct: 643 TPWLKLEWKEVQSVREIHLIFNDDVNEDLINLHHHRTPFDIIPELVRAYRLEALDSEGKW 702 Query: 253 TEIAAGTGNRRRKVIHRLPEPVQARSLRVVIESTNGSPHAELIEIRAYG 301 +A+ NRRR+ +HRL EPV +LR+V+E TNGS +AE+IE+RAYG Sbjct: 703 ITLASEALNRRRRTVHRLEEPVPCAALRLVVERTNGSDYAEVIEVRAYG 751 >B1D7W2.1 B1D7W2_9BACL Pyridine nucleotide-disulphide oxidoreductase Length = 749 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 141/301 (46%), Positives = 192/301 (63%), Gaps = 4/301 (1%) Query: 1 VQSALELAQPGEAYRLRQDVAVLFPADPGISGFELLLDAEQAAEVTAELWDTGRGENYVP 60 + + L +P E YRL DV +FPAD G G LL+ +A +T ELWDTGR ENYVP Sbjct: 451 TMTQIRLDRPAEEYRLASDVGFVFPADGGFDGLTLLVSTSEATSLTVELWDTGRPENYVP 510 Query: 61 HTLQXXXXXXXXXGQRQWVAFDLQWQXXXXX-XNAFVIIKANPAVSLHHSLEPHSGVLVF 119 + G++QW+ N FVI++AN SLH S P +GVL F Sbjct: 511 AGFKQALTIPVRAGEKQWLDVPADNTLFGNEPCNVFVIVRANEEASLHTSAVPVTGVLAF 570 Query: 120 FKDEQPQVSRDLEDHSTDQLVVLWKMKGQARRPFCFRLSSPTAAFAADKAVNGYHRPYGG 179 + +P VS DLEDH DQ V+ W MK R+PFCF + T AFA DK ++GY RPYGG Sbjct: 571 ERGVKPIVSSDLEDHQPDQPVIEWSMKRLVRKPFCFAVG--TKAFAPDKVIDGYARPYGG 628 Query: 180 PQQWMSEPMEDGKPEWLQLDWDSEQTLGEIHLTFNDDVNEDLVNLHHHRTPFAIIPELVR 239 P+QW+S+P+ +G+ EW++++ + E+H+TFNDDVNEDL+NLHHH TPF +IPE+ + Sbjct: 629 PRQWVSQPLAEGREEWVEVELSQPADVKEVHITFNDDVNEDLINLHHHETPFLVIPEVAK 688 Query: 240 DYRVEAFGAGGEWTEIAAGTGNRRRKVIHRLPEPVQARSLRVVIESTNGSPHAELIEIRA 299 Y ++A+ AGGEW +A+ + NR RK IH L +PV+ +R+V++ TNG HAE+IEIR Sbjct: 689 SYELQAW-AGGEWIIVASDSMNRTRKKIHTLGKPVRTDRVRIVVKETNGGEHAEVIEIRI 747 Query: 300 Y 300 Y Sbjct: 748 Y 748 >B3KF64.1 B3KF64_9BACI Pyridine nucleotide-disulphide oxidoreductase Length = 750 Score = 284 bits (727), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 140/301 (46%), Positives = 184/301 (61%), Gaps = 2/301 (0%) Query: 1 VQSALELAQPGEAYRLRQDVAVLFPADPGISGFELLLDAEQAAEVTAELWDTGRGENYVP 60 + + L + L +++ +LFP +P + +LL+DA +AA + ELW T +GENYVP Sbjct: 451 TMTKVSLTDSTYTHPLDKELGILFPVNPSLESVKLLIDAAKAATLEVELWHTDKGENYVP 510 Query: 61 HTLQXXXXXXXXXGQRQWVAFDLQWQXXXXXXNAFVIIKANPAVSLHHSLEPHSGVLVFF 120 + G QWV DL WQ NAF+IIKAN A+ LH S P +GVL F Sbjct: 511 KQMVAEASVSVAEGTGQWVKLDLFWQPDAAC-NAFLIIKANEAIQLHGSDCPMTGVLCFE 569 Query: 121 KDEQPQVSRDLEDHSTDQLVVLWKMKGQARRPFCFRLSSPTAAFAADKAVNGYHRPYGGP 180 K +P VS LED DQ VV W M+ R+P C +++ T A+AA +GY RP+ GP Sbjct: 570 KGPKPIVSTLLEDRQPDQPVVQWSMRRWNRKPLCLQVTPNTEAYAAAAVTDGYIRPFAGP 629 Query: 181 QQWMSEPMEDGKPEWLQLDWDSEQTLGEIHLTFNDDVNEDLVNLHHHRTPFAIIPELVRD 240 WMSEPM GKPEWLQL+W Q++ EIH+TFNDDVNEDL+NLHHHRT F IPELVR Sbjct: 630 HLWMSEPMSPGKPEWLQLEWAEVQSIAEIHVTFNDDVNEDLINLHHHRTAFEAIPELVRA 689 Query: 241 YRVEAFGAGGEWTEIAAGTGNRRRKVIHRLPEPVQARSLRVVIESTNGSPHAELIEIRAY 300 YR+EA G EW + N +RK +H+L + + ++R+ I+ TNG P AE+ EIR Y Sbjct: 690 YRIEAL-IGEEWVTLVEEKHNHKRKKVHKLSRSISSHTIRLWIDETNGGPRAEVAEIRVY 748 Query: 301 G 301 Sbjct: 749 A 749 >A6M208.1 A6M208_CLOB8 Pyridine nucleotide-disulphide oxidoreductase Length = 745 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 123/296 (41%), Positives = 181/296 (61%), Gaps = 5/296 (1%) Query: 5 LELAQPGEAYRLRQDVAVLFPADPGISGFELLLDAEQAAEVTAELWDTGRGENYVPHTLQ 64 +E+ + YRL D+ +LFP + + E+L+ + + + ELWDTGR ENY+P L Sbjct: 455 IEVVNSNDEYRLTTDIGILFPIENRVEDVEILISSLEQTTLEVELWDTGRAENYIPKNLL 514 Query: 65 XXXXXXXXXGQRQWVAFDLQWQXXXXXXNAFVIIKANPAVSLHHSLEPHSGVLVFFKDEQ 124 G+ QWV D + N F+++KAN V++H S E +GVL F K + Sbjct: 515 KKKKVQVEKGRNQWVKSDFVLESEVAR-NLFLVVKANDKVTIHLSYEQLTGVLSFTK--K 571 Query: 125 PQVSRDLEDHSTDQLVVLWKMKGQARRPFCFRLSSPTAAFAADKAVNGYHRPYGGPQQWM 184 + +L+D+ +V W MK AR+ FCFR+ T A++ K ++GY RPYGGP W+ Sbjct: 572 AIENTNLDDYIGINPIVEWSMKEMARKEFCFRIHGETNAYSPSKIIDGYSRPYGGPHMWI 631 Query: 185 SEPMEDGKPEWLQLDWDSEQTLGEIHLTFNDDVNEDLVNLHHHRTPFAIIPELVRDYRVE 244 SE ++D EW+QL+W+++ + EIH+TFNDDVNEDL+NLHHH T F+++PELV+DY+V Sbjct: 632 SEDIKD-TDEWIQLEWENDIEINEIHITFNDDVNEDLINLHHHYTDFSVMPELVKDYKVS 690 Query: 245 AFGAGGEWTEIAAGTGNRRRKVIHRLPEPVQARSLRVVIESTNGSPHAELIEIRAY 300 + +W IA+ NR+RK I + + A +RV IESTNG AE+IE+R Y Sbjct: 691 IW-KDNKWEVIASKKNNRKRKEIFKNIGKILANKIRVTIESTNGCRKAEIIEVRVY 745 >B1VSW2.1 B1VSW2_STRGG Putative uncharacterized protein Length = 762 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 121/300 (40%), Positives = 166/300 (55%), Gaps = 11/300 (3%) Query: 10 PGEAYRLRQDVAVLFPADPGISGFELLLDAE---QAAEVTAELWDTGRGENYVPHTLQXX 66 PG Y L +D+AVL P DP + +LL+ ++ E+T ELW TG EN VP Sbjct: 465 PGAPYPLTRDLAVLLPVDPALDTVDLLVHGAPDGRSRELTVELWGTGHPENAVPVDRLLT 524 Query: 67 XXXXXXXGQRQWVAFDLQWQXXXXXXNAFVIIKANPAVSLHHSLEPHSGVLVFFKDEQPQ 126 G WV L NA + ++A +L E GVL + + Sbjct: 525 TTVTVPPGGPHWVTARLD-HHPDTPGNAILTVRACADTALVLLPERAHGVLALRRKAEGD 583 Query: 127 VSRDLEDHSTD-QLVVLWKMKGQARRPFCFRLSSPTAAFAADKAVNGYHRPYGGPQQWMS 185 + D + D QLV+ W+ +G R+ F FR + TAAF ++AV GY RPYGGPQ W S Sbjct: 584 AAVDHDIPEEDGQLVLEWQARGLRRQTFAFRAAPRTAAFHPERAVGGYQRPYGGPQMWSS 643 Query: 186 EPMEDGKPEWLQLDWDSEQTLGEIHLTFNDDVNEDLVNLHHHRTPFAIIPELVRDYRVEA 245 G +WL+LDWD E+ L EI L F+DDV+E L NLH HRTP+ ++PELVRDYRV++ Sbjct: 644 --ASRGDAQWLRLDWDDERELTEIRLVFDDDVDEYLNNLHRHRTPYEVMPELVRDYRVQS 701 Query: 246 FGAGGEWTEIAAGTGNRRRKVIHRLPE----PVQARSLRVVIESTNGSPHAELIEIRAYG 301 A G W + T NRRR +H L PV+ +LR+V+++T+G+ HA +I +AYG Sbjct: 702 RDAAGAWHTLLTVTDNRRRHRVHALSAADGGPVRTGALRLVVDATHGARHAHVIAFKAYG 761 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,982,016,517 Number of extensions: 84927425 Number of successful extensions: 154507 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 154469 Number of HSP's successfully gapped: 19 Length of query: 305 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 170 Effective length of database: 1,788,859,178 Effective search space: 304106060260 Effective search space used: 304106060260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)