BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0317.0011.p (369 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK55.1 B3KK55_9BACI Stage IV sporulation protein B 503 e-140 B1DJE2.1 B1DJE2_9BACL Stage IV sporulation protein B 462 e-128 C0ZC15.1 C0ZC15_BREBN Stage IV sporulation protein B 397 e-108 B7GHG7.1 B7GHG7_ANOFW Predicted membrane-associated Zn-dependent... 374 e-102 C5D463.1 C5D463_9BACI Stage IV sporulation protein B 369 e-100 >B3KK55.1 B3KK55_9BACI Stage IV sporulation protein B Length = 444 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/329 (73%), Positives = 285/329 (86%) Query: 40 DLRVIPGGQTIGVKVKSAGVLVVGHHLIEVSQQSKLSPGENSGLLPGDLMISIDGVKLDE 99 +L+VIPGGQTIGVKVKS+G+LVVGHHL+ V +K+SPGE +GL GDL+ ++DG L++ Sbjct: 115 ELKVIPGGQTIGVKVKSSGILVVGHHLVRVQNGAKVSPGEAAGLKLGDLLTTMDGKPLND 174 Query: 100 VSKVAKLVERAGRAREPLTIVFKRGGKEHIAKLTPAYDRNDKVWRLGLYIRDSAAGVGTL 159 V+KVA++VE+AG+A PL I FKR GK KL+PAYD+ D+ WRLGLYIRDSAAGVGTL Sbjct: 175 VTKVAEIVEKAGKANRPLDISFKRDGKVMKTKLSPAYDQEDQSWRLGLYIRDSAAGVGTL 234 Query: 160 TFYAPKQGVYGALGHVITDMNTGTPIVVGSGHIVQSSVTSISKSQDGDPGEKRATFYKES 219 TFYAP Q VYGALGHVITDMNT TPI VGSG IVQS+VTSIS+S++G+PGEKRATF K+ Sbjct: 235 TFYAPHQKVYGALGHVITDMNTQTPIDVGSGQIVQSNVTSISRSEEGEPGEKRATFTKDG 294 Query: 220 QVLGNVESNTDFGIFGKMTRNPDHSLYQEPIPVAMSNEVKEGPAQILTVVDGQRVERFNV 279 ++LGNVE NT FGIFGKM + PDH LYQEPIPVA S+EVKEGPA+ILTVV+GQ VERF V Sbjct: 295 KILGNVERNTHFGIFGKMNQLPDHGLYQEPIPVAFSHEVKEGPAEILTVVEGQEVERFTV 354 Query: 280 DIIHVAHQETPATKGMVLRITDPRLIDKTGGIVQGMSGSPIVQNGRLIGAVTHVFVNDPK 339 +I+HV+ Q+ PATKGMVLRITDPRL+ KTGGIVQGMSGSPIVQ+G+LIGAVTHVFVNDPK Sbjct: 355 EIVHVSKQDAPATKGMVLRITDPRLLKKTGGIVQGMSGSPIVQDGKLIGAVTHVFVNDPK 414 Query: 340 SGYGCFIEWMLKDSGVVQLENTLPYNLKA 368 SGYGCFIEWML+DSGV+Q + P NLKA Sbjct: 415 SGYGCFIEWMLQDSGVLQSTESTPQNLKA 443 >B1DJE2.1 B1DJE2_9BACL Stage IV sporulation protein B Length = 441 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 225/322 (69%), Positives = 263/322 (81%) Query: 40 DLRVIPGGQTIGVKVKSAGVLVVGHHLIEVSQQSKLSPGENSGLLPGDLMISIDGVKLDE 99 DLRVIPGGQTIGVKVKSAG+LVVGHH + S +K SPGE +GL GDL+I IDG ++E Sbjct: 114 DLRVIPGGQTIGVKVKSAGILVVGHHQVRASNGTKESPGEKAGLRLGDLIIRIDGHNINE 173 Query: 100 VSKVAKLVERAGRAREPLTIVFKRGGKEHIAKLTPAYDRNDKVWRLGLYIRDSAAGVGTL 159 VSKVA LVE+AGR + PL I +KR G KL P D ++ W+LGLYIRDSAAGVGTL Sbjct: 174 VSKVANLVEQAGREQRPLAITYKRNGTIGETKLYPIRDAEERNWKLGLYIRDSAAGVGTL 233 Query: 160 TFYAPKQGVYGALGHVITDMNTGTPIVVGSGHIVQSSVTSISKSQDGDPGEKRATFYKES 219 TFYAP QGVYGALGHVITDM+T TPI VG G I+QSSVTSI+KSQ G+PGEKRA F KE Sbjct: 234 TFYAPDQGVYGALGHVITDMDTQTPIEVGEGQILQSSVTSINKSQTGEPGEKRAHFVKEG 293 Query: 220 QVLGNVESNTDFGIFGKMTRNPDHSLYQEPIPVAMSNEVKEGPAQILTVVDGQRVERFNV 279 ++LGN+E NT FGIFGKM NP+HS + IPV + EVKEGPAQILTVV+GQ+VERF++ Sbjct: 294 KILGNIERNTPFGIFGKMGENPNHSFSDKAIPVTFAEEVKEGPAQILTVVNGQKVERFDI 353 Query: 280 DIIHVAHQETPATKGMVLRITDPRLIDKTGGIVQGMSGSPIVQNGRLIGAVTHVFVNDPK 339 +I HV Q PATKGMV++ITD RL+DKTGGIVQGMSGSPI+QNG+L+GAVTHVFVNDP Sbjct: 354 EIAHVTKQPAPATKGMVIKITDKRLLDKTGGIVQGMSGSPIIQNGKLVGAVTHVFVNDPA 413 Query: 340 SGYGCFIEWMLKDSGVVQLENT 361 SGYGCFIEWML+D+GV+ E + Sbjct: 414 SGYGCFIEWMLQDAGVLTREKS 435 >C0ZC15.1 C0ZC15_BREBN Stage IV sporulation protein B Length = 444 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 185/316 (58%), Positives = 249/316 (78%), Gaps = 1/316 (0%) Query: 40 DLRVIPGGQTIGVKVKSAGVLVVGHHLIEVSQQSKLSPGENSGLLPGDLMISIDGVKLDE 99 DLR+ PGGQ+IGVK+++AGVLVVGHHL++ ++K SPGE +G+ GD++I ++ + +++ Sbjct: 114 DLRLYPGGQSIGVKLQTAGVLVVGHHLVD-DGKNKFSPGEQAGIHVGDMIIKMNDMYIND 172 Query: 100 VSKVAKLVERAGRAREPLTIVFKRGGKEHIAKLTPAYDRNDKVWRLGLYIRDSAAGVGTL 159 ++ V KL+ G+ + ++ RG ++ L PA D+ D +R+GLYIRDSAAGVGTL Sbjct: 173 MNDVKKLINETGKKNHSVQLLVVRGKEKLSLTLHPAKDKKDSEYRMGLYIRDSAAGVGTL 232 Query: 160 TFYAPKQGVYGALGHVITDMNTGTPIVVGSGHIVQSSVTSISKSQDGDPGEKRATFYKES 219 TFY P YGALGHVI+D++TG IVVG G IVQ+SVTSI K Q G+PGEK A FY ES Sbjct: 233 TFYDPNSKAYGALGHVISDVDTGQAIVVGDGQIVQASVTSIEKGQSGNPGEKFARFYNES 292 Query: 220 QVLGNVESNTDFGIFGKMTRNPDHSLYQEPIPVAMSNEVKEGPAQILTVVDGQRVERFNV 279 +VLGN+ NT FGIFGKM P S YQEP+P+A++ +V+EGPA+ILTVV+GQ+VE F++ Sbjct: 293 EVLGNITKNTPFGIFGKMKDEPKRSYYQEPLPIALAEQVEEGPAKILTVVEGQKVEEFDI 352 Query: 280 DIIHVAHQETPATKGMVLRITDPRLIDKTGGIVQGMSGSPIVQNGRLIGAVTHVFVNDPK 339 +I +V Q PATKGM++++TD RL++KTGGIVQGMSGSPI+Q G+++GAVTHVFVNDP Sbjct: 353 EIANVVKQHFPATKGMIIKVTDKRLLEKTGGIVQGMSGSPIIQKGKIVGAVTHVFVNDPT 412 Query: 340 SGYGCFIEWMLKDSGV 355 SGYGC+IEWML+D+GV Sbjct: 413 SGYGCYIEWMLQDAGV 428 >B7GHG7.1 B7GHG7_ANOFW Predicted membrane-associated Zn-dependent protease Length = 425 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/316 (55%), Positives = 247/316 (78%), Gaps = 1/316 (0%) Query: 40 DLRVIPGGQTIGVKVKSAGVLVVGHHLIEVSQQSKLSPGENSGLLPGDLMISIDGVKLDE 99 D +V+PGGQ+IGVK+ + GVLVVGHHL+E ++Q K SPGE +G+ GD + I+G K+++ Sbjct: 100 DFKVVPGGQSIGVKLNTIGVLVVGHHLVE-TEQGKQSPGEKAGIRVGDAITHINGQKIEK 158 Query: 100 VSKVAKLVERAGRAREPLTIVFKRGGKEHIAKLTPAYDRNDKVWRLGLYIRDSAAGVGTL 159 ++ V+ +E AGR +PL + R LTP D++D+ +R+GLYIRDSAAG+GT+ Sbjct: 159 MTDVSPFIEEAGRTGKPLRLTVARDHDTFETTLTPLKDKHDQAYRIGLYIRDSAAGIGTM 218 Query: 160 TFYAPKQGVYGALGHVITDMNTGTPIVVGSGHIVQSSVTSISKSQDGDPGEKRATFYKES 219 TF+ PK +YGALGHVI+DM+T PI+V G IV+S+VT+I K ++G PGEK A F + Sbjct: 219 TFFDPKSNIYGALGHVISDMDTKKPIIVRDGTIVKSTVTAIDKGRNGSPGEKLARFSADK 278 Query: 220 QVLGNVESNTDFGIFGKMTRNPDHSLYQEPIPVAMSNEVKEGPAQILTVVDGQRVERFNV 279 QV+G++ +N+ FGIFGK+++ + ++ +P+P+A+S +VK+GPA+ILTVV+ RVE F+V Sbjct: 279 QVIGDIRTNSPFGIFGKLSKPIQNGIFDKPMPIALSTDVKKGPAKILTVVEQDRVEAFDV 338 Query: 280 DIIHVAHQETPATKGMVLRITDPRLIDKTGGIVQGMSGSPIVQNGRLIGAVTHVFVNDPK 339 +I+ V Q+ PATKGMV+++TDPRL++KTGGIVQGMSGSPI+Q+G+LIGAVTHVFVNDP Sbjct: 339 EIVSVTPQKFPATKGMVIKVTDPRLLEKTGGIVQGMSGSPIIQDGKLIGAVTHVFVNDPT 398 Query: 340 SGYGCFIEWMLKDSGV 355 SGYG IEWML ++G+ Sbjct: 399 SGYGVHIEWMLHEAGI 414 >C5D463.1 C5D463_9BACI Stage IV sporulation protein B Length = 430 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/315 (55%), Positives = 243/315 (77%), Gaps = 1/315 (0%) Query: 41 LRVIPGGQTIGVKVKSAGVLVVGHHLIEVSQQSKLSPGENSGLLPGDLMISIDGVKLDEV 100 L+VIPGGQ+IGVK+ + GVLVVG+HL+E +++ K SPGE +G+ GD++ I+G K++++ Sbjct: 106 LKVIPGGQSIGVKLNTVGVLVVGYHLVE-TEKGKKSPGEIAGIKVGDIITRINGKKIEKM 164 Query: 101 SKVAKLVERAGRAREPLTIVFKRGGKEHIAKLTPAYDRNDKVWRLGLYIRDSAAGVGTLT 160 S ++ +E AG+ +PL + R KL P D++D +R+GLYIRDSAAG+GT+T Sbjct: 165 SDLSPFIEEAGKTGKPLHLQVLRDKHSFTTKLVPLKDKHDHAYRVGLYIRDSAAGIGTMT 224 Query: 161 FYAPKQGVYGALGHVITDMNTGTPIVVGSGHIVQSSVTSISKSQDGDPGEKRATFYKESQ 220 FY P YGALGHVI+DM+T PIVV +G I++S+VTSI K G PGEK A F E + Sbjct: 225 FYDPVSKKYGALGHVISDMDTKKPIVVQNGQIMRSTVTSIEKGSSGSPGEKLARFSDEEE 284 Query: 221 VLGNVESNTDFGIFGKMTRNPDHSLYQEPIPVAMSNEVKEGPAQILTVVDGQRVERFNVD 280 V+GN+ +N+ FGIFGK+T D+ + +PIP+A+SN+VKEGPA++LTVV+ +VE+F+++ Sbjct: 285 VIGNITNNSPFGIFGKLTEPVDNGIMNKPIPIALSNQVKEGPAKMLTVVENDKVEQFDIE 344 Query: 281 IIHVAHQETPATKGMVLRITDPRLIDKTGGIVQGMSGSPIVQNGRLIGAVTHVFVNDPKS 340 I+ Q+ PATKG+V+R+TDPRL+ KTGGIVQGMSGSPI+Q+G+L+GAVTHVFVNDP S Sbjct: 345 IVSTIPQKFPATKGLVIRVTDPRLLKKTGGIVQGMSGSPIIQDGKLVGAVTHVFVNDPTS 404 Query: 341 GYGCFIEWMLKDSGV 355 GYG IEWML ++G+ Sbjct: 405 GYGVHIEWMLNEAGI 419 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,273,249,402 Number of extensions: 99281373 Number of successful extensions: 179273 Number of sequences better than 1.0e-05: 209 Number of HSP's gapped: 178959 Number of HSP's successfully gapped: 209 Length of query: 369 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 232 Effective length of database: 1,770,017,148 Effective search space: 410643978336 Effective search space used: 410643978336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)