BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0317.0010.p (575 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK54.1 B3KK54_9BACI DNA repair protein RecN 901 0.0 B1DJE3.1 B1DJE3_9BACL DNA repair protein RecN 657 0.0 A8FF08.1 A8FF08_BACP2 DNA repair protein RecN 511 e-143 B4AL67.1 B4AL67_BACPU DNA repair protein RecN 511 e-142 C0ZC14.1 C0ZC14_BREBN DNA repair protein 508 e-142 >B3KK54.1 B3KK54_9BACI DNA repair protein RecN Length = 579 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 430/573 (75%), Positives = 505/573 (88%) Query: 1 VLETLSIRNLAVVEAVEVHFYPGFHVLTGETGAGKSIIIDALGLVVGGRGSADSIRYGTD 60 +L TLSIRNLAVVE+V+VHFYPGFHVLTGETGAGKSIIIDALGL+ GGRGSA+ IRYG D Sbjct: 1 MLNTLSIRNLAVVESVDVHFYPGFHVLTGETGAGKSIIIDALGLIAGGRGSAELIRYGCD 60 Query: 61 KAEMEALFSLPAAHPVWETLERLGITAQPEEHLIIRREITSQGKSTSRVNGQMVNLSMLR 120 KAE+EALF LPA HPVW TL++LG+ A PEEHL+IRRE+TSQGKSTSR+NGQ++NLSMLR Sbjct: 61 KAEIEALFELPAEHPVWSTLKKLGVEADPEEHLLIRRELTSQGKSTSRINGQLLNLSMLR 120 Query: 121 EIGEQLVNIHGQHEHQNLLKAERHLGLLDTYGEAVIGPLKADYQEKYTAFAKVEKELREL 180 E+GE+L+NIHGQHEHQ+LL++E+H+ LLDTYG+ IGP K YQE Y F+KVEKEL++L Sbjct: 121 EVGEKLINIHGQHEHQSLLRSEQHMSLLDTYGDKTIGPAKRKYQELYGEFSKVEKELKDL 180 Query: 181 QETSQKAYQMLDLYRFQLEEISSAGLKPGEDELLAEERVKLSHSEKMMDSVSGAYELLYD 240 QETSQKAYQMLD+YRFQLEEI++AGLK GEDE L+EER KLSHSEKMMDSV+GAY+LLY Sbjct: 181 QETSQKAYQMLDMYRFQLEEIAAAGLKTGEDEALSEERTKLSHSEKMMDSVAGAYDLLYG 240 Query: 241 RQGLESIGNVISRLEDAVRYDEKGLKGVLDQLQSSYYQLEDAAFQLRDYREEIEFNPARL 300 GLES+ +SRLED YDEKGLK +++QLQS+YYQLEDA FQLRDYR+ IEFNP RL Sbjct: 241 SSGLESVSRALSRLEDVSGYDEKGLKPLVEQLQSAYYQLEDAVFQLRDYRDGIEFNPERL 300 Query: 301 EDIENRLDLISGLRRKYGDSVEQILAYYEQISHETDLLENKDEYIEKLTVKRDGLLNILM 360 +IE RLD+ISGLRRKYGD+VEQIL YY +I ETD+LENKDE+I+ L +RD LL++L+ Sbjct: 301 NEIELRLDMISGLRRKYGDNVEQILEYYVRIQQETDMLENKDEFIQALEQRRDELLSVLL 360 Query: 361 EAAEALSQARRRCAADLAAQVEGELKDLQMERTSLQVKMDILEDPRGVEYQDRRYRLTRQ 420 +A+ LS AR++CA DLA QVEGELKDLQMERTSL+V++++ DP G EY+ ++ RLTRQ Sbjct: 361 VSAKELSHARKQCAQDLARQVEGELKDLQMERTSLEVRLELQLDPNGYEYEGQKVRLTRQ 420 Query: 421 GIDSAEFMISPNPGEPLRPLSKIASGGELARIMLAMKSIFARHDAIPVLIFDEVDTGVSG 480 G+D+AEF+IS NPGEPLRPL+KIASGGE++RIMLAMKSIFARHD IPVLIFDEVDTGVSG Sbjct: 421 GMDTAEFLISANPGEPLRPLAKIASGGEMSRIMLAMKSIFARHDQIPVLIFDEVDTGVSG 480 Query: 481 RAAQSIADKLYKLSSTCQVFSITHLPQVACMADHQYLIRKKVEDGRTMTEVESLTAEGRV 540 RAAQSIA+KL+ L+ TCQVFSITHLPQVACMADHQYLI KK+E RTMT+VE+L EGRV Sbjct: 481 RAAQSIAEKLFLLAKTCQVFSITHLPQVACMADHQYLIEKKLEASRTMTQVENLNEEGRV 540 Query: 541 MELARMLGGVEITEKTLHHAQEMLGLAEASKAA 573 ELARMLGGVEITEKTLHHAQEML LA A KA+ Sbjct: 541 KELARMLGGVEITEKTLHHAQEMLNLAAAQKAS 573 >B1DJE3.1 B1DJE3_9BACL DNA repair protein RecN Length = 569 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/575 (58%), Positives = 426/575 (74%), Gaps = 8/575 (1%) Query: 1 VLETLSIRNLAVVEAVEVHFYPGFHVLTGETGAGKSIIIDALGLVVGGRGSADSIRYGTD 60 +L LSIRNLAV+E V V F+ GFHVLTGETGAGKSI+IDAL L+VGGRGSAD +RYG D Sbjct: 1 MLRELSIRNLAVIEEVNVSFHHGFHVLTGETGAGKSILIDALSLIVGGRGSADMVRYGCD 60 Query: 61 KAEMEALFSLPAAHPVWETLERLGITAQPEEHLIIRREITSQGKSTSRVNGQMVNLSMLR 120 KAEMEA+F LP+ HPVW +ERLG+ A EE L+IRRE+T+ GKS+SRVNGQ+V ++MLR Sbjct: 61 KAEMEAMFDLPSQHPVWAVMERLGVQAPREEMLVIRRELTAHGKSSSRVNGQLVTMTMLR 120 Query: 121 EIGEQLVNIHGQHEHQNLLKAERHLGLLDTYGEAVIGPLKADYQEKYTAFAKVEKELREL 180 EIGE LVNIHGQHEHQ+LL+ E+HL LD + ++ K Y+ Y + +REL Sbjct: 121 EIGECLVNIHGQHEHQSLLRTEQHLEWLDLFAGDLLIERKTAYKAVYQQLQQARSSVREL 180 Query: 181 QETSQKAYQMLDLYRFQLEEISSAGLKPGEDELLAEERVKLSHSEKMMDSVSGAYELLYD 240 +ET++ QMLDLYR+Q+EEI++A LK GEDE L EER KL ++ K MDSVS AY LLY+ Sbjct: 181 EETTRHNVQMLDLYRYQIEEITNANLKDGEDEHLLEERRKLQYAGKRMDSVSEAYALLYN 240 Query: 241 RQGLESIGNVISRLEDAVRYDEKGLKGVLDQLQSSYYQLEDAAFQLRDYREEIEFNPARL 300 +GL++I IS+L D YD L +L+QLQS+YYQ EDA FQLRDYR+ I+ +P +L Sbjct: 241 GKGLDAISKAISKLTDIQSYDPAVLTPMLEQLQSAYYQAEDAVFQLRDYRDSIDSDPGQL 300 Query: 301 EDIENRLDLISGLRRKYGDSVEQILAYYEQISHETDLLENKDEYIEKLTVKRDGLLNILM 360 IE+RLDLI+GL+RKYG+++ IL Y ++I+ E D +EN+DEY++KL ++D L L Sbjct: 301 SVIEDRLDLINGLKRKYGETIPDILQYLDRITEERDKIENRDEYLDKL--RKDELRLYLQ 358 Query: 361 --EAAEALSQARRRCAADLAAQVEGELKDLQMERTSLQVKMDILEDPRGVEYQDRRYRLT 418 E A+ LS+ R + LAA +E ELK LQM T +V++D P E + L Sbjct: 359 AHELAQELSELRSHASERLAAAIELELKQLQMGNTIFRVQLD---HPTASETSE-MAALN 414 Query: 419 RQGIDSAEFMISPNPGEPLRPLSKIASGGELARIMLAMKSIFARHDAIPVLIFDEVDTGV 478 GID A FM+S NPGEPL+PL+KIASGGE++RIMLA+K+IFA D +PVL+FDEVDTGV Sbjct: 415 ANGIDEAIFMLSTNPGEPLKPLNKIASGGEMSRIMLALKAIFAEIDQVPVLVFDEVDTGV 474 Query: 479 SGRAAQSIADKLYKLSSTCQVFSITHLPQVACMADHQYLIRKKVEDGRTMTEVESLTAEG 538 SGRAAQ+IA+K+ +LSS CQ+FSITHLPQVACMADH Y I+K + + RT T V L Sbjct: 475 SGRAAQAIAEKMSQLSSKCQIFSITHLPQVACMADHHYEIKKHIIEQRTSTNVTKLVEHS 534 Query: 539 RVMELARMLGGVEITEKTLHHAQEMLGLAEASKAA 573 R+ ELARMLGGVE+TEKT HHAQEML LA+ K A Sbjct: 535 RIEELARMLGGVEVTEKTRHHAQEMLVLADRQKGA 569 >A8FF08.1 A8FF08_BACP2 DNA repair protein RecN Length = 578 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 269/580 (46%), Positives = 388/580 (66%), Gaps = 8/580 (1%) Query: 1 VLETLSIRNLAVVEAVEVHFYPGFHVLTGETGAGKSIIIDALGLVVGGRGSADSIRYGTD 60 +L L+I+N A++E + V F G VLTGETGAGKSI+IDA+ L+VGGRGS++ +RYG Sbjct: 1 MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEK 60 Query: 61 KAEMEALFSLPAA-HPVWETLERLGITAQPEEHLIIRREITSQGKSTSRVNGQMVNLSML 119 KAE+E LF +PAA HPV+ E GI A +E +I+RR++ + GKS R+NG++V +S+L Sbjct: 61 KAELEGLFLVPAADHPVFALCEEQGIDA-SDEMMILRRDMNNNGKSICRINGKLVTISLL 119 Query: 120 REIGEQLVNIHGQHEHQNLLKAERHLGLLDTYGEAVIGPLKADYQEKYTAFAKVEKELRE 179 RE+G L++IHGQH++Q L++ E HL LLD +G I P + YQE Y + K ++L++ Sbjct: 120 REVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALSQYQEAYEQYTKTAQKLKQ 179 Query: 180 LQETSQKAYQMLDLYRFQLEEISSAGLKPGEDELLAEERVKLSHSEKMMDSVSGAYELLY 239 L E Q+ LDL +FQLEEI +A L+PGEDE L EER ++S+ EK+ S+ AY L Sbjct: 180 LSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALR 239 Query: 240 DRQG-LESIGNVISRLEDAVRYDEKGLKGVLDQLQSSYYQLEDAAFQLRDYREEIEFNPA 298 + QG L+ +G S L D V LK + +Q+ +SYY LED+ FQ+R +++EF+PA Sbjct: 240 NEQGGLDWVGMSSSEL-DQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPA 298 Query: 299 RLEDIENRLDLISGLRRKYGDSVEQILAYYEQISHETDLLENKDEYIEKLTVKRDGLLNI 358 RL+ IE+RL+ + L+RKYG +VE+IL Y +I E D ++N+D +++ L K D + Sbjct: 299 RLDFIESRLNEMKQLKRKYGTTVEEILEYAAKIEEEIDQIQNRDTHLQTLKNKLDAMSRD 358 Query: 359 LMEAAEALSQARRRCAADLAAQVEGELKDLQMERTSLQVKMDILEDPRGVE----YQDRR 414 + A +S+ R++ A LA Q++ ELKDL ME+++ I P + Sbjct: 359 ALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFSIRYAPFSSTDNPLLDGKP 418 Query: 415 YRLTRQGIDSAEFMISPNPGEPLRPLSKIASGGELARIMLAMKSIFARHDAIPVLIFDEV 474 +L + GID A+F+IS NPGEP++ LSK+ASGGE++R+MLA+KSIF+ + +IFDEV Sbjct: 419 VQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEV 478 Query: 475 DTGVSGRAAQSIADKLYKLSSTCQVFSITHLPQVACMADHQYLIRKKVEDGRTMTEVESL 534 DTGVSGR AQ+IA+K+YK+++ QV ITHLPQVA MAD I K+ + GRT+T V+ L Sbjct: 479 DTGVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPL 538 Query: 535 TAEGRVMELARMLGGVEITEKTLHHAQEMLGLAEASKAAA 574 + E +V E+ RM+ GVE+TE T HA+E+L A K Sbjct: 539 SHEEKVSEIGRMIAGVEVTELTKQHAKELLHQANDVKTTG 578 >B4AL67.1 B4AL67_BACPU DNA repair protein RecN Length = 578 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 268/580 (46%), Positives = 389/580 (67%), Gaps = 8/580 (1%) Query: 1 VLETLSIRNLAVVEAVEVHFYPGFHVLTGETGAGKSIIIDALGLVVGGRGSADSIRYGTD 60 +L L+I+N A++E + V F G VLTGETGAGKSI+IDA+ L+VGGRGS++ +RYG Sbjct: 1 MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEK 60 Query: 61 KAEMEALFSLPAA-HPVWETLERLGITAQPEEHLIIRREITSQGKSTSRVNGQMVNLSML 119 KAE+E LF +PAA HPV+ E GI A +E +I+RR++ + GKS R+NG++V +S+L Sbjct: 61 KAELEGLFLVPAADHPVFALCEEHGIDA-TDEMMILRRDMNNNGKSICRINGKLVTISLL 119 Query: 120 REIGEQLVNIHGQHEHQNLLKAERHLGLLDTYGEAVIGPLKADYQEKYTAFAKVEKELRE 179 RE+G L++IHGQH++Q L++ E HL LLD +G I P + YQE Y + K ++L++ Sbjct: 120 REVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALSQYQEAYEQYTKTAQKLKQ 179 Query: 180 LQETSQKAYQMLDLYRFQLEEISSAGLKPGEDELLAEERVKLSHSEKMMDSVSGAYELLY 239 L E Q+ LDL +FQLEEI +A L+PGEDE L EER ++S+ EK+ S+ AY L Sbjct: 180 LSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALR 239 Query: 240 DRQG-LESIGNVISRLEDAVRYDEKGLKGVLDQLQSSYYQLEDAAFQLRDYREEIEFNPA 298 + QG L+ +G S LE ++ LK + +Q+ +SYY LED+ FQ+R +++EF+PA Sbjct: 240 NEQGGLDWVGMSSSELEQVSEINDD-LKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPA 298 Query: 299 RLEDIENRLDLISGLRRKYGDSVEQILAYYEQISHETDLLENKDEYIEKLTVKRDGLLNI 358 RL+ IE+RL+ + L+RKYG +VE+IL Y +I E D ++N+D +++ L K D + Sbjct: 299 RLDLIESRLNEMKQLKRKYGTTVEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRD 358 Query: 359 LMEAAEALSQARRRCAADLAAQVEGELKDLQMERTSLQVKMDILEDPRGVE----YQDRR 414 + A +S+ R++ A LA Q++ ELKDL ME+++ I P + Sbjct: 359 ALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFSIRYAPFSSTDNPLLDGKP 418 Query: 415 YRLTRQGIDSAEFMISPNPGEPLRPLSKIASGGELARIMLAMKSIFARHDAIPVLIFDEV 474 +L + GID A+F+IS NPGEP++ LSK+ASGGE++R+MLA+KSIF+ + +IFDEV Sbjct: 419 VQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEV 478 Query: 475 DTGVSGRAAQSIADKLYKLSSTCQVFSITHLPQVACMADHQYLIRKKVEDGRTMTEVESL 534 DTGVSGR AQ+IA+K+YK+++ QV ITHLPQVA MAD I K+ + GRT+T V+ L Sbjct: 479 DTGVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPL 538 Query: 535 TAEGRVMELARMLGGVEITEKTLHHAQEMLGLAEASKAAA 574 + E +V E+ RM+ GVE+TE T HA+E+L A K Sbjct: 539 SHEEKVSEIGRMIAGVEVTELTKQHAKELLHQANDVKTTG 578 >C0ZC14.1 C0ZC14_BREBN DNA repair protein Length = 574 Score = 508 bits (1307), Expect = e-142, Method: Compositional matrix adjust. Identities = 261/575 (45%), Positives = 381/575 (66%), Gaps = 2/575 (0%) Query: 1 VLETLSIRNLAVVEAVEVHFYPGFHVLTGETGAGKSIIIDALGLVVGGRGSADSIRYGTD 60 +L LSIRN A++++V + F G ++LTGETGAGKSIIIDALGL++GGR SAD +RYG Sbjct: 1 MLVELSIRNFAIIKSVTISFQKGLNILTGETGAGKSIIIDALGLLLGGRASADFVRYGEP 60 Query: 61 KAEMEALFSLPAAHPVWETLERLGITAQPEEHLIIRREITSQGKSTSRVNGQMVNLSMLR 120 +AE+E LF LP HP + + +G+ + + L++RR+I++QGKS R+NGQ+V L+MLR Sbjct: 61 RAEVEGLFELPPGHPGLDVCKNVGVQIEQDGMLVVRRDISNQGKSIIRINGQLVTLAMLR 120 Query: 121 EIGEQLVNIHGQHEHQNLLKAERHLGLLDTYGEAVIGPLKADYQEKYTAFAKVEKELREL 180 E+G LV +HGQH+ L+++++H+ LD YGE+ +G K +Y YTA+ K +++L + Sbjct: 121 ELGPWLVTVHGQHDTHMLMQSDKHINWLDAYGESALGAAKQEYSTLYTAYRKTKQDLERM 180 Query: 181 QETSQKAYQMLDLYRFQLEEISSAGLKPGEDELLAEERVKLSHSEKMMDSVSGAYELLY- 239 ++ Q +DL ++QL+EI SA L PGEDE L ++R K + EK+ ++ AY L+ Sbjct: 181 ARNDRELVQRIDLLQYQLDEIESATLTPGEDEKLMQQRKKWMNIEKVYSTIQDAYRALHG 240 Query: 240 DRQGLESIGNVISRLEDAVRYDEKGLKGVLDQLQSSYYQLEDAAFQLRDYREEIEFNPAR 299 D++G++ +G+ + LE V Y+E+ L +L+ +QS+YYQ+ED LR +++F P + Sbjct: 241 DQKGMDWLGHAMGELERGVNYEEQ-LVPILEIVQSAYYQIEDVVHNLRQLSYQMDFEPEQ 299 Query: 300 LEDIENRLDLISGLRRKYGDSVEQILAYYEQISHETDLLENKDEYIEKLTVKRDGLLNIL 359 L ++E RLD I L+RKYG SV+ IL Y I E D + + ++ ++++ + L Sbjct: 300 LAEVERRLDQIQSLKRKYGKSVDDILEYAATIQDELDDMHHYEDRLQQVEKQLQEFAADL 359 Query: 360 MEAAEALSQARRRCAADLAAQVEGELKDLQMERTSLQVKMDILEDPRGVEYQDRRYRLTR 419 A LS R CA LA ++E +LK+L MER + + D GVE + + Sbjct: 360 AVEALELSVIRSECAGKLAQEIEQQLKELHMERARFAIDVRQTPDDDGVEIDGIKRFVDA 419 Query: 420 QGIDSAEFMISPNPGEPLRPLSKIASGGELARIMLAMKSIFARHDAIPVLIFDEVDTGVS 479 G+D EF+ISPNPGEPLRPL+KIASGGEL+R+MLA+K+I A D + LIFDEVDTGVS Sbjct: 420 NGMDQIEFLISPNPGEPLRPLAKIASGGELSRVMLAIKTILAGTDQVETLIFDEVDTGVS 479 Query: 480 GRAAQSIADKLYKLSSTCQVFSITHLPQVACMADHQYLIRKKVEDGRTMTEVESLTAEGR 539 GRAAQ+IA+KL +++ QV ITHLPQVA MAD +LI+K++ + T T V L+ + R Sbjct: 480 GRAAQAIAEKLARVAGQRQVLCITHLPQVASMADAHFLIKKEMSENETETRVNRLSDDER 539 Query: 540 VMELARMLGGVEITEKTLHHAQEMLGLAEASKAAA 574 V ELARML G E+T KT HA+EM+ L K + Sbjct: 540 VSELARMLSGAEVTAKTEEHAREMILLGRERKTVS 574 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,137,389,938 Number of extensions: 129965580 Number of successful extensions: 542603 Number of sequences better than 1.0e-05: 1654 Number of HSP's gapped: 536266 Number of HSP's successfully gapped: 1665 Length of query: 575 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 434 Effective length of database: 1,732,333,088 Effective search space: 751832560192 Effective search space used: 751832560192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)