BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0317.0009.p (149 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK53.1 B3KK53_9BACI Arginine repressor 226 6e-58 A8VXC9.1 A8VXC9_9BACI Transketolase domain protein 196 7e-49 Q9ZEV1.1 Q9ZEV1_BACST Arginine repressor 195 1e-48 B1DJE4.1 B1DJE4_9BACL Arginine repressor, ArgR 193 5e-48 C3J0P1.1 C3J0P1_9BACI Arginine repressor, ArgR 191 2e-47 >B3KK53.1 B3KK53_9BACI Arginine repressor Length = 149 Score = 226 bits (576), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 108/149 (72%), Positives = 120/149 (80%) Query: 1 MKGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYK 60 MKG RHIKIR D+LV+ALR GFQVTQAT+SRDIKELLLIKVP DDGRYK Sbjct: 1 MKGQRHIKIRDIITHQDIETQDELVDALRAEGFQVTQATISRDIKELLLIKVPTDDGRYK 60 Query: 61 YSLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGT 120 YS+PTDQRYNP QKLKR LVDNFV+ID +GNLVVMKCLPGTANSVA L+DN++W QIMGT Sbjct: 61 YSMPTDQRYNPVQKLKRALVDNFVYIDRTGNLVVMKCLPGTANSVAVLLDNMEWSQIMGT 120 Query: 121 ISGDDTILIICRQPEDSHDVISQIMGYIS 149 I GDDTIL+ICR D V+SQI +IS Sbjct: 121 ICGDDTILLICRTEADGEHVVSQIKNFIS 149 >A8VXC9.1 A8VXC9_9BACI Transketolase domain protein Length = 149 Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 92/144 (63%), Positives = 111/144 (77%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR DDLV+ LR+AGF VTQATVSRDIKEL L+KVPM DGRYKY Sbjct: 3 KGQRHIKIRDIISNREIETQDDLVQNLRDAGFNVTQATVSRDIKELHLVKVPMMDGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP+DQR+NP QK+KR LVD FV IDS+GN++VMK LPG AN+V ALIDN++W ++MG I Sbjct: 63 SLPSDQRFNPLQKIKRTLVDCFVSIDSTGNMIVMKTLPGNANAVGALIDNLEWEEVMGNI 122 Query: 122 SGDDTILIICRQPEDSHDVISQIM 145 GDDTILIICR+ + + V + + Sbjct: 123 CGDDTILIICREAKQAEQVSKRFL 146 >Q9ZEV1.1 Q9ZEV1_BACST Arginine repressor Length = 149 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 90/147 (61%), Positives = 113/147 (76%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR D+LV+ L++AGF VTQATVSRDIKEL L+KVPM +GRYKY Sbjct: 3 KGQRHIKIREIIMNHEIETQDELVDMLKKAGFNVTQATVSRDIKELQLVKVPMANGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP+DQR+NPTQKLKR L+D FV +D SGNL+V+K LPG A+++ L+DN+DW +I+GTI Sbjct: 63 SLPSDQRFNPTQKLKRALMDAFVKLDGSGNLLVLKTLPGNAHAIGVLLDNLDWNEIVGTI 122 Query: 122 SGDDTILIICRQPEDSHDVISQIMGYI 148 GDDT LIICR ED+ V Q++G + Sbjct: 123 CGDDTCLIICRTAEDAEKVSGQLLGML 149 >B1DJE4.1 B1DJE4_9BACL Arginine repressor, ArgR Length = 150 Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 91/150 (60%), Positives = 115/150 (76%), Gaps = 1/150 (0%) Query: 1 MKGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYK 60 MKG R KI+ ++LV+ALR+AG QVTQATVSRD+KEL+LIKVP DGRYK Sbjct: 1 MKGIRQYKIKELITKNTIETQEELVDALRDAGLQVTQATVSRDMKELMLIKVPAGDGRYK 60 Query: 61 YSLPTDQ-RYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMG 119 YSLP DQ R NP KLKR L+D+F HID + NLVVMKCLPGTAN++ ALIDN++WP++MG Sbjct: 61 YSLPQDQQRQNPINKLKRALIDHFTHIDFTENLVVMKCLPGTANAIGALIDNMEWPEVMG 120 Query: 120 TISGDDTILIICRQPEDSHDVISQIMGYIS 149 TI GDDTILIICR E S +++ +++ ++ Sbjct: 121 TICGDDTILIICRTKEKSGELVEKLLDLLN 150 >C3J0P1.1 C3J0P1_9BACI Arginine repressor, ArgR Length = 149 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 89/147 (60%), Positives = 112/147 (76%) Query: 2 KGHRHIKIRXXXXXXXXXXXDDLVEALREAGFQVTQATVSRDIKELLLIKVPMDDGRYKY 61 KG RHIKIR D+LV+ LREAGF VTQATVSRDIKE+ L+KVPM +GRYKY Sbjct: 3 KGQRHIKIREIIMNHDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVPMANGRYKY 62 Query: 62 SLPTDQRYNPTQKLKRVLVDNFVHIDSSGNLVVMKCLPGTANSVAALIDNIDWPQIMGTI 121 SLP+DQR+NP QKLKR LVD FV +D +GNL+V++ LPG A++V L+DN+DW +I+GTI Sbjct: 63 SLPSDQRFNPLQKLKRALVDVFVKLDGTGNLLVLRTLPGNAHAVGVLLDNLDWNEIVGTI 122 Query: 122 SGDDTILIICRQPEDSHDVISQIMGYI 148 GDDT LIICR P+D+ V Q++ + Sbjct: 123 CGDDTCLIICRTPKDAEKVSDQLLSML 149 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 789,303,115 Number of extensions: 28845736 Number of successful extensions: 65646 Number of sequences better than 1.0e-05: 810 Number of HSP's gapped: 65497 Number of HSP's successfully gapped: 810 Length of query: 149 Length of database: 3,060,696,203 Length adjustment: 111 Effective length of query: 38 Effective length of database: 2,014,963,538 Effective search space: 76568614444 Effective search space used: 76568614444 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)