BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0317.0008.p
         (159 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK52.1 B3KK52_9BACI Putative uncharacterized protein                130   5e-29
B1DJE5.1 B1DJE5_9BACL Putative uncharacterized protein                 93   9e-18

>B3KK52.1 B3KK52_9BACI Putative uncharacterized protein
          Length = 163

 Score =  130 bits (326), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 98/151 (64%), Gaps = 3/151 (1%)

Query: 8   DKAVMALIGLAVAIFVIYRIYIWLQS-SPRSFIKDKLPLNKDILPHPSIDLLEEAGYEVI 66
           D  +M L+G+ +A+ + YR+  WL S SP       +P+N+ I  HP I +LE+ GY+V+
Sbjct: 6   DWLLMILLGVVIALLIGYRLNRWLMSPSPDRL--PGIPINEHIPDHPVIGMLEQEGYDVV 63

Query: 67  GGKLKIPLSFTVNGASMYSRLFIDYVASKEEDSFYLVILSRPRKTLEFTGSSLRDSLLPY 126
           GGK+KI LSF      + SRLFIDYVAS +    Y+V L+R R  +++TGS +RD L+P+
Sbjct: 64  GGKVKINLSFETGHKPILSRLFIDYVASDDSGELYMVKLARERMPVDWTGSGIRDRLMPF 123

Query: 127 LLIYPECSGVLYVNTVTSAIHEIRLGKDDGE 157
           LL+YPEC+G+LY++     I+ + +   D E
Sbjct: 124 LLLYPECAGLLYIDVNEGTINRLSMDWTDEE 154


>B1DJE5.1 B1DJE5_9BACL Putative uncharacterized protein
          Length = 152

 Score = 92.8 bits (229), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 8/140 (5%)

Query: 14  LIGLAVAIFVIYR-IYIWLQ---SSPRSFIKDKLPLNKDILPHPSIDLLEEAGYEVIGGK 69
           L+  A  +F  YR  Y WL    S  R  +     L KD     +I  LE +GYEV+ GK
Sbjct: 11  LVAGAFLLFWAYRGFYRWLHQPASVNRLTLGKGGELAKD---DENIQFLERSGYEVVSGK 67

Query: 70  LKIPLSFTVNGASMYSRLFIDYVASKEEDSFYLVILSRPRKTLEFTGSSLRDSLLPYLLI 129
            ++P+   ++G S+ SRL+IDY+A +++   Y+V  +R R  +++TGS +RD LL Y L+
Sbjct: 68  HRVPIGIELDGQSLNSRLYIDYIA-EQDGKMYIVKAARERMPMDWTGSGVRDRLLVYSLL 126

Query: 130 YPECSGVLYVNTVTSAIHEI 149
            PEC+GVL+V+     I  I
Sbjct: 127 LPECAGVLFVDVKEQIIRRI 146


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.139    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 916,646,761
Number of extensions: 35815660
Number of successful extensions: 75346
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 75346
Number of HSP's successfully gapped: 2
Length of query: 159
Length of database: 3,060,696,203
Length adjustment: 120
Effective length of query: 39
Effective length of database: 1,930,174,403
Effective search space: 75276801717
Effective search space used: 75276801717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)