BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0317.0006.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK51.1 B3KK51_9BACI Hemolysin A 375 e-102 B1DJE6.1 B1DJE6_9BACL Hemolysin A 363 1e-98 C2X2C7.1 C2X2C7_BACCE Putative uncharacterized protein 311 5e-83 C2VGP2.1 C2VGP2_BACCE Putative uncharacterized protein 311 5e-83 C2V0C3.1 C2V0C3_BACCE Putative uncharacterized protein 311 5e-83 >B3KK51.1 B3KK51_9BACI Hemolysin A Length = 246 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 182/238 (76%), Positives = 203/238 (85%) Query: 7 KERIDVLLVEQGFFASREKAKAAIMAGLVLADEERIEKAGMKVPRSAVLRVKGAVHPYVS 66 KERIDVLLVEQG++ SREKAKAAIMAGLV A ERIEKAGMK+PR++ L+VKG+VHPYVS Sbjct: 6 KERIDVLLVEQGYYESREKAKAAIMAGLVYAGTERIEKAGMKIPRTSELKVKGSVHPYVS 65 Query: 67 RGGLKLEKALRQFGIDLNGRVMLDIGSSTGGFTDCALQNGASHVYAIDVGYNQLDWRLRN 126 RGGLKLEKA+R FG+D+ GR MLDIGSSTGGFTDCALQ+GAS+VYAIDVGYNQLDW LRN Sbjct: 66 RGGLKLEKAIRTFGLDMKGRTMLDIGSSTGGFTDCALQHGASYVYAIDVGYNQLDWSLRN 125 Query: 127 DERVSVMEQTNFRYMTPPDLQGPVPDFASIDVSFXXXXXXXXXXXXXXERPADIAALIKP 186 DERV VME+TNFRYMTP DL GP+PDFASIDVSF +P D+AALIKP Sbjct: 126 DERVCVMERTNFRYMTPEDLNGPLPDFASIDVSFISLRIILPPLKLLLGKPGDVAALIKP 185 Query: 187 QFEAGREKVGKSGVVREPAVHKEVLMGVLGMASGLGYRLEGLTFSPITGGEGNIEFLA 244 QFEAGREKVGKSGVVR+P VHK+VL VL A GLG++L+ LTFSPITGGEGNIEFLA Sbjct: 186 QFEAGREKVGKSGVVRDPKVHKDVLTQVLTFADGLGFKLKNLTFSPITGGEGNIEFLA 243 >B1DJE6.1 B1DJE6_9BACL Hemolysin A Length = 278 Score = 363 bits (932), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 187/284 (65%), Positives = 212/284 (74%), Gaps = 14/284 (4%) Query: 6 PKERIDVLLVEQGFFASREKAKAAIMAGLVLADEERIEKAGMKVPRSAVLRVKGAVHPYV 65 PKERIDVLLVE+GF+ SREKAKAA+MAGLVL + E ++K GMKVPR A ++VKGA+HPYV Sbjct: 5 PKERIDVLLVERGFYESREKAKAAVMAGLVLVNNEPVDKGGMKVPREAEIKVKGAIHPYV 64 Query: 66 SRGGLKLEKALRQFGIDLNGRVMLDIGSSTGGFTDCALQNGASHVYAIDVGYNQLDWRLR 125 SRGGLKLEKA+R F IDL+GRVMLDIG+STGGFTDCALQ+GAS VYAIDVGYNQLDW LR Sbjct: 65 SRGGLKLEKAIRSFDIDLSGRVMLDIGASTGGFTDCALQHGASFVYAIDVGYNQLDWSLR 124 Query: 126 NDERVSVMEQTNFRYMTPPDLQGPVPDFASIDVSFXXXXXXXXXXXXXXERPADIAALIK 185 DERV VME+TNFRY P DL GP P FASIDVSF + I ALIK Sbjct: 125 QDERVRVMERTNFRYAQPADLNGPPPTFASIDVSFISLKLILPALSGLLSVGSGIVALIK 184 Query: 186 PQFEAGREKVGKSGVVREPAVHKEVLMGVLGMASGLGYRLEGLTFSPITGGEGNIEFLAH 245 PQFEAGREKVGKSGVVREP+VHKEVL VL AS LGY+L+ LTFSPITGGEGNIEFLA+ Sbjct: 185 PQFEAGREKVGKSGVVREPSVHKEVLETVLKTASELGYKLQNLTFSPITGGEGNIEFLAY 244 Query: 246 WKLLPDATETGASRTELSSDQNTPEDFAALADTVIQEAAATFKV 289 W T + + D A+ D V+++A TF V Sbjct: 245 W-------------TWENEPNGSTHDEEAIKD-VVRQAGETFTV 274 >C2X2C7.1 C2X2C7_BACCE Putative uncharacterized protein Length = 280 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 157/268 (58%), Positives = 191/268 (71%) Query: 3 MEHPKERIDVLLVEQGFFASREKAKAAIMAGLVLADEERIEKAGMKVPRSAVLRVKGAVH 62 M KER+DVLLVE+G +REKAK AIMAGLV A+E R++K G K+P+ + VKG V Sbjct: 1 MSAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVM 60 Query: 63 PYVSRGGLKLEKALRQFGIDLNGRVMLDIGSSTGGFTDCALQNGASHVYAIDVGYNQLDW 122 PYVSRGG KLEKAL F +DL +VM+DIGSSTGGFTDCALQNGA YA+DVGYNQL W Sbjct: 61 PYVSRGGYKLEKALETFHLDLQDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAW 120 Query: 123 RLRNDERVSVMEQTNFRYMTPPDLQGPVPDFASIDVSFXXXXXXXXXXXXXXERPADIAA 182 +LR DERV VME+TNFRY+TP DL+ +P FASIDVSF D+AA Sbjct: 121 KLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISLKLILPVLKTMLMLNGDVAA 180 Query: 183 LIKPQFEAGREKVGKSGVVREPAVHKEVLMGVLGMASGLGYRLEGLTFSPITGGEGNIEF 242 LIKPQFEAGRE+VGK G+VR+ VH+ V+ ++ A GY +EGLTFSPITGG+GNIEF Sbjct: 181 LIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFALKEGYDVEGLTFSPITGGDGNIEF 240 Query: 243 LAHWKLLPDATETGASRTELSSDQNTPE 270 L H K + E+G + + +S +Q E Sbjct: 241 LIHLKWHGERDESGKNHSPISIEQVVTE 268 >C2VGP2.1 C2VGP2_BACCE Putative uncharacterized protein Length = 280 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 157/268 (58%), Positives = 191/268 (71%) Query: 3 MEHPKERIDVLLVEQGFFASREKAKAAIMAGLVLADEERIEKAGMKVPRSAVLRVKGAVH 62 M KER+DVLLVE+G +REKAK AIMAGLV A+E R++K G K+P+ + VKG V Sbjct: 1 MSAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVM 60 Query: 63 PYVSRGGLKLEKALRQFGIDLNGRVMLDIGSSTGGFTDCALQNGASHVYAIDVGYNQLDW 122 PYVSRGG KLEKAL F +DL +VM+DIGSSTGGFTDCALQNGA YA+DVGYNQL W Sbjct: 61 PYVSRGGYKLEKALETFHLDLQDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAW 120 Query: 123 RLRNDERVSVMEQTNFRYMTPPDLQGPVPDFASIDVSFXXXXXXXXXXXXXXERPADIAA 182 +LR DERV VME+TNFRY+TP DL+ +P FASIDVSF D+AA Sbjct: 121 KLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISLKLILPVLKTMLMLNGDVAA 180 Query: 183 LIKPQFEAGREKVGKSGVVREPAVHKEVLMGVLGMASGLGYRLEGLTFSPITGGEGNIEF 242 LIKPQFEAGRE+VGK G+VR+ VH+ V+ ++ A GY +EGLTFSPITGG+GNIEF Sbjct: 181 LIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFALKEGYDVEGLTFSPITGGDGNIEF 240 Query: 243 LAHWKLLPDATETGASRTELSSDQNTPE 270 L H K + E+G + + +S +Q E Sbjct: 241 LIHLKWHGERDESGKNHSPISIEQVVTE 268 >C2V0C3.1 C2V0C3_BACCE Putative uncharacterized protein Length = 280 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 157/268 (58%), Positives = 191/268 (71%) Query: 3 MEHPKERIDVLLVEQGFFASREKAKAAIMAGLVLADEERIEKAGMKVPRSAVLRVKGAVH 62 M KER+DVLLVE+G +REKAK AIMAGLV A+E R++K G K+P+ + VKG V Sbjct: 1 MSAKKERVDVLLVERGLIETREKAKRAIMAGLVYANEMRLDKPGEKIPQDTEITVKGQVM 60 Query: 63 PYVSRGGLKLEKALRQFGIDLNGRVMLDIGSSTGGFTDCALQNGASHVYAIDVGYNQLDW 122 PYVSRGG KLEKAL F +DL +VM+DIGSSTGGFTDCALQNGA YA+DVGYNQL W Sbjct: 61 PYVSRGGYKLEKALETFHLDLQDKVMIDIGSSTGGFTDCALQNGAKLSYALDVGYNQLAW 120 Query: 123 RLRNDERVSVMEQTNFRYMTPPDLQGPVPDFASIDVSFXXXXXXXXXXXXXXERPADIAA 182 +LR DERV VME+TNFRY+TP DL+ +P FASIDVSF D+AA Sbjct: 121 KLRQDERVVVMERTNFRYVTPADLERGLPQFASIDVSFISLKLILPVLKTMLMLNGDVAA 180 Query: 183 LIKPQFEAGREKVGKSGVVREPAVHKEVLMGVLGMASGLGYRLEGLTFSPITGGEGNIEF 242 LIKPQFEAGRE+VGK G+VR+ VH+ V+ ++ A GY +EGLTFSPITGG+GNIEF Sbjct: 181 LIKPQFEAGREQVGKKGIVRDRKVHEAVVEMIVDFALKEGYDVEGLTFSPITGGDGNIEF 240 Query: 243 LAHWKLLPDATETGASRTELSSDQNTPE 270 L H K + E+G + + +S +Q E Sbjct: 241 LIHLKWHGERDESGKNHSPISIEQVVTE 268 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,697,381,822 Number of extensions: 69784883 Number of successful extensions: 170227 Number of sequences better than 1.0e-05: 874 Number of HSP's gapped: 168683 Number of HSP's successfully gapped: 877 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)