BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0317.0005.p (634 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK50.1 B3KK50_9BACI Deoxyxylulose-5-phosphate synthase 1039 0.0 C0ZC10.1 DXS_BREBN 1-deoxy-D-xylulose-5-phosphate synthase EC=2.... 806 0.0 C5D467.1 C5D467_9BACI Deoxyxylulose-5-phosphate synthase 796 0.0 Q9K971.1 DXS_BACHD 1-deoxy-D-xylulose-5-phosphate synthase EC=2.... 790 0.0 Q75TG4.1 Q75TG4_BACST 1-deoxyxylulose-5-phosphate synthase EC=2.... 786 0.0 >B3KK50.1 B3KK50_9BACI Deoxyxylulose-5-phosphate synthase Length = 635 Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/621 (78%), Positives = 551/621 (88%) Query: 1 VLLPQINDPQQLKALSVEELATLAEEIRRFLIEKLTATGGHLGSNLGVVELTLALHYCYD 60 +LLP I P+QLK LSV+EL LA +IR FLIEKL+ TGGHL NLGVVELTLALHYC+D Sbjct: 1 MLLPNIKQPEQLKNLSVDELEDLAGQIRHFLIEKLSVTGGHLAPNLGVVELTLALHYCFD 60 Query: 61 SPRDKMIYDVGHQAYVHKILTGRQDRFDTLRKKDGLCGFVKRAESEHDVWEAGHSSTSLS 120 SPRDKMI+DVGHQAYVHKILTGR D+FDTLRK GLCGFVKR+ESEHDVWEAGHSSTSLS Sbjct: 61 SPRDKMIFDVGHQAYVHKILTGRMDKFDTLRKYKGLCGFVKRSESEHDVWEAGHSSTSLS 120 Query: 121 AAMGMAMARDLKGEDNKVIAVIGDGALTGGMAFEALNHIGHERRKLMVILNDNEMSIAPN 180 AAMGMAMARDLKGEDN+VIA+IGDGALTGGMAFEALNHIGHE++KLMVILNDNEMSIAPN Sbjct: 121 AAMGMAMARDLKGEDNRVIAMIGDGALTGGMAFEALNHIGHEQKKLMVILNDNEMSIAPN 180 Query: 181 VGAMHNYLSKIRSDRHYLRAKDEVEGLLKKIPAIGGRLAKTAQNVKDSLKYMMVPGVLFE 240 VGAMHNYLSKIRSDR YLRAKDEVE +LKKIPAIGG+LAKTA+ +KDSLKYMMVPGVLFE Sbjct: 181 VGAMHNYLSKIRSDRFYLRAKDEVEMVLKKIPAIGGKLAKTAEKMKDSLKYMMVPGVLFE 240 Query: 241 ELGFTYLGPVDGHDVEKLIDTFHQADNVSGPVLVHVLTTKGKGYKPAETDFYKSHAISPY 300 ELGFTYLGPVDGHD+ KLIDT QADNV GPVL+H +TTKGKGY+PAE+D +K H I+PY Sbjct: 241 ELGFTYLGPVDGHDLNKLIDTLKQADNVDGPVLIHAVTTKGKGYRPAESDSHKWHGITPY 300 Query: 301 KIESGQSLKAVGNPMYTEVFGETLIELGREDKRLIAVTPAMPGGSGLFPFAKEFPDRMID 360 KIESGQ LKAVGNPMYTEVFG+TL+ELG +DKR++AVTPAMPGGSGL PF+K+FPDRMID Sbjct: 301 KIESGQVLKAVGNPMYTEVFGQTLVELGEQDKRIVAVTPAMPGGSGLIPFSKKFPDRMID 360 Query: 361 VGIAEQHAATLCAALAMEGMKPVYAVYSTFMQRAYDQIVHDICRHNANVMFAIDRAGFVG 420 VGIAEQHAATLCAALAMEGMKPV+AVYSTFMQRAYDQIVHDICRHNANVMFAIDRAGFVG Sbjct: 361 VGIAEQHAATLCAALAMEGMKPVFAVYSTFMQRAYDQIVHDICRHNANVMFAIDRAGFVG 420 Query: 421 ADGETHQGVYDIAFMRHIPNMVMMMPKDENELRHMMKTALEYNDGPIAYRYPRIDGTGVA 480 ADGETHQGVYD+AFMRHIPN+V+MMPKDENELRHMMKTAL+YN+GPIAYRYPR + GV Sbjct: 421 ADGETHQGVYDVAFMRHIPNIVIMMPKDENELRHMMKTALDYNEGPIAYRYPRNNVRGVP 480 Query: 481 LDAELKPLPIGTWERLRPGDDYAVLACGPMVQVXXXXXXXXXXXGIQLGVVNARFLKPLD 540 +D EL P+PIGTWE +RPG+ YA+LA GPMVQ+ GI + VVNARFLKPLD Sbjct: 481 MDTELVPIPIGTWEVVRPGEGYAILASGPMVQLAEEAAEQLKREGIAVEVVNARFLKPLD 540 Query: 541 SSMLLDLAHAGTGMIVLEEACEAGSLGSAVLEFYAEHEIYDARVHLMGVPDIFVEHGSIK 600 ML +LA GT M+VLEE +AGSLGSAVLE++AE I+DA V LMG+ D F+EHGSI Sbjct: 541 GDMLANLAKTGTSMLVLEETSQAGSLGSAVLEYFAEQGIHDAVVSLMGIEDRFIEHGSIP 600 Query: 601 EQRQQTGLTVEAVISRVKAMK 621 +QR++ GLT+E V ++++K Sbjct: 601 QQREEVGLTLEGVCQEIRSLK 621 >C0ZC10.1 DXS_BREBN 1-deoxy-D-xylulose-5-phosphate synthase EC=2.2.1.7 Length = 628 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/620 (61%), Positives = 473/620 (76%), Gaps = 2/620 (0%) Query: 1 VLLPQINDPQQLKALSVEELATLAEEIRRFLIEKLTATGGHLGSNLGVVELTLALHYCYD 60 +LL INDPQ LK + +L TLA EIR+FLIE L+ TGGHL NLGVVELTLALHY +D Sbjct: 1 MLLTTINDPQDLKKCTQPQLHTLASEIRQFLIETLSKTGGHLAPNLGVVELTLALHYVFD 60 Query: 61 SPRDKMIYDVGHQAYVHKILTGRQDRFDTLRKKDGLCGFVKRAESEHDVWEAGHSSTSLS 120 SP+DK+I+DVGHQAYVHK+LTGR++ F TLR+ GLCGF K ES HDVWE GHSSTSLS Sbjct: 61 SPKDKLIWDVGHQAYVHKMLTGRREMFPTLRQYKGLCGFPKMVESPHDVWETGHSSTSLS 120 Query: 121 AAMGMAMARDLKGEDNKVIAVIGDGALTGGMAFEALNHIGHERRKLMVILNDNEMSIAPN 180 AAMGMA ARDLK E N V+AVIGDGALTGGMA EALNHIGHER+ ++V+LNDNEMSIAPN Sbjct: 121 AAMGMATARDLKKEKNHVVAVIGDGALTGGMALEALNHIGHERKNVIVVLNDNEMSIAPN 180 Query: 181 VGAMHNYLSKIRSDRHYLRAKDEVEGLLKKIPAIGGRLAKTAQNVKDSLKYMMVPGVLFE 240 VGA+HNYL KIRS +Y AKDEVEGLLK IPA+GG+LA A+ KDS+KY++V GVLFE Sbjct: 181 VGALHNYLGKIRSTENYQWAKDEVEGLLKSIPAVGGKLAHMAERFKDSMKYLLVSGVLFE 240 Query: 241 ELGFTYLGPVDGHDVEKLIDTFHQADNVSGPVLVHVLTTKGKGYKPAETDFYKSHAISPY 300 ELGFTY+GP+DGH++E L+DT A + GPVL+H +T KG GY PAE D K H I Y Sbjct: 241 ELGFTYIGPIDGHNMELLLDTLKTAKHTKGPVLIHAITKKGLGYAPAEADSVKWHGIGTY 300 Query: 301 KIESGQSLKAVGNPMYTEVFGETLIELGREDKRLIAVTPAMPGGSGLFPFAKEFPDRMID 360 KIESG + K+ P YT VF +T+++L ED ++AVTPAMP GSGL PF +++PDR+ D Sbjct: 301 KIESGDTPKSA--PTYTSVFADTMMKLADEDHSIVAVTPAMPAGSGLIPFGQKYPDRLFD 358 Query: 361 VGIAEQHAATLCAALAMEGMKPVYAVYSTFMQRAYDQIVHDICRHNANVMFAIDRAGFVG 420 VGIAEQHA T A LA +G+KPV+A+YSTF+QRAYDQ++HD+ R +V+FA+DRAG VG Sbjct: 359 VGIAEQHACTFAAGLATQGLKPVFAIYSTFLQRAYDQLIHDVARQKLHVIFAVDRAGLVG 418 Query: 421 ADGETHQGVYDIAFMRHIPNMVMMMPKDENELRHMMKTALEYNDGPIAYRYPRIDGTGVA 480 ADGETHQG+YD+AFMR IPNMV+M PKDENELRHMMKTA+EY GPI+YRYPR+ GV Sbjct: 419 ADGETHQGMYDVAFMRIIPNMVIMAPKDENELRHMMKTAVEYKGGPISYRYPRLPTRGVK 478 Query: 481 LDAELKPLPIGTWERLRPGDDYAVLACGPMVQVXXXXXXXXXXXGIQLGVVNARFLKPLD 540 +D EL+ LPIG E +R G A+L+ G + ++ GI+ +VNARF KPLD Sbjct: 479 MDEELQVLPIGKAEIVREGKHVAILSFGHVFEIAEAAVNQLQEEGIKPMLVNARFCKPLD 538 Query: 541 SSMLLDLAHAGTGMIVLEEACEAGSLGSAVLEFYAEHEIYDARVHLMGVPDIFVEHGSIK 600 +L LA G +I +EE E G GSAV+E Y+ + V ++ VPD FVEHGS+K Sbjct: 539 EELLFRLAKEGYDIITVEEGSEMGGFGSAVIECYSRAGYHGMNVQIVAVPDYFVEHGSVK 598 Query: 601 EQRQQTGLTVEAVISRVKAM 620 EQRQ+ GLT + + +RV+++ Sbjct: 599 EQRQEVGLTADHIAARVRSL 618 >C5D467.1 C5D467_9BACI Deoxyxylulose-5-phosphate synthase Length = 630 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/618 (60%), Positives = 471/618 (76%), Gaps = 2/618 (0%) Query: 5 QINDPQQLKALSVEELATLAEEIRRFLIEKLTATGGHLGSNLGVVELTLALHYCYDSPRD 64 +I +P+ LK +S ++L L+ +IR+FLIEKL+ TGGH+G NLGVVELT+ALH +DSP+D Sbjct: 5 KIKNPRFLKNMSTKQLIELSADIRKFLIEKLSKTGGHIGPNLGVVELTIALHKVFDSPKD 64 Query: 65 KMIYDVGHQAYVHKILTGRQDRFDTLRKKDGLCGFVKRAESEHDVWEAGHSSTSLSAAMG 124 K+I+DVGHQ+YVHKILTGR FDTLR+ GL GF KR+ESEHDVWE GHSSTSLSAAMG Sbjct: 65 KLIWDVGHQSYVHKILTGRASEFDTLRQYKGLSGFPKRSESEHDVWETGHSSTSLSAAMG 124 Query: 125 MAMARDLKGEDNKVIAVIGDGALTGGMAFEALNHIGHERRKLMVILNDNEMSIAPNVGAM 184 MA+ARDLKG D ++ +IGDGALTGGMA EALNHIGHE++ ++V+LNDNEMSIAPNVGA+ Sbjct: 125 MAIARDLKGTDEYIVPIIGDGALTGGMALEALNHIGHEKKDIIVVLNDNEMSIAPNVGAL 184 Query: 185 HNYLSKIRSDRHYLRAKDEVEGLLKKIPAIGGRLAKTAQNVKDSLKYMMVPGVLFEELGF 244 HN L ++R+ Y KDE+E LLK+IPA+GG+LA TA+ +KDSLKY++V GV FEELGF Sbjct: 185 HNVLGRLRTAGKYQWVKDELEFLLKRIPAVGGKLAATAERIKDSLKYLLVSGVFFEELGF 244 Query: 245 TYLGPVDGHDVEKLIDTFHQADNVSGPVLVHVLTTKGKGYKPAETDFYKS-HAISPYKIE 303 TYLGPVDGH+ + L + H A + GPVL+HV+T KGKGY PAE D + H PYKIE Sbjct: 245 TYLGPVDGHNFDDLFENLHYAKKIKGPVLLHVITKKGKGYSPAENDKVGTWHGTGPYKIE 304 Query: 304 SGQSLKAVGN-PMYTEVFGETLIELGREDKRLIAVTPAMPGGSGLFPFAKEFPDRMIDVG 362 +G LK V P ++E+ ET+ +L R DKR++A+TPAMP GS L FA EFPDRM DVG Sbjct: 305 TGDFLKPVDTAPSWSELVSETVRKLARTDKRIVAITPAMPVGSKLEGFASEFPDRMFDVG 364 Query: 363 IAEQHAATLCAALAMEGMKPVYAVYSTFMQRAYDQIVHDICRHNANVMFAIDRAGFVGAD 422 IAEQHA TL A LA +GMKP A+YSTF+QRAYDQ+VHD+CR N NV FAIDRAG VGAD Sbjct: 365 IAEQHATTLAAGLATQGMKPFLAIYSTFLQRAYDQVVHDVCRQNLNVFFAIDRAGLVGAD 424 Query: 423 GETHQGVYDIAFMRHIPNMVMMMPKDENELRHMMKTALEYNDGPIAYRYPRIDGTGVALD 482 GETHQGV+DIAF+RH+PN+V+MMPKDENE +HM+ TA++Y+DGPIA R+PR +G GV LD Sbjct: 425 GETHQGVFDIAFLRHVPNLVIMMPKDENEGQHMVYTAIQYDDGPIALRFPRGNGLGVKLD 484 Query: 483 AELKPLPIGTWERLRPGDDYAVLACGPMVQVXXXXXXXXXXXGIQLGVVNARFLKPLDSS 542 ELK +PIGTWE LR G D A+L G + + I + VVNARF+KP+D Sbjct: 485 EELKKIPIGTWEVLREGRDLAILTFGTTISMALEAAEKLAKDNISVKVVNARFIKPMDEK 544 Query: 543 MLLDLAHAGTGMIVLEEACEAGSLGSAVLEFYAEHEIYDARVHLMGVPDIFVEHGSIKEQ 602 +L DL + ++ +EEA G GSAVLEF +H + A ++ MG+PD F+EHGS+KE Sbjct: 545 ILHDLLESNIPILTIEEAVLQGGFGSAVLEFAHDHGYHQAVINRMGIPDRFIEHGSVKEL 604 Query: 603 RQQTGLTVEAVISRVKAM 620 + GLT +I RVK + Sbjct: 605 LNEIGLTTAHIIDRVKTI 622 >Q9K971.1 DXS_BACHD 1-deoxy-D-xylulose-5-phosphate synthase EC=2.2.1.7 Length = 629 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/619 (60%), Positives = 472/619 (76%), Gaps = 1/619 (0%) Query: 3 LPQINDPQQLKALSVEELATLAEEIRRFLIEKLTATGGHLGSNLGVVELTLALHYCYDSP 62 L +++DP +K+++ +EL LAEEIR+FLIEKL+ TGGHLG NLGVVELTLALH +DSP Sbjct: 3 LEKLHDPSLIKSMTKQELEQLAEEIRQFLIEKLSITGGHLGPNLGVVELTLALHSLFDSP 62 Query: 63 RDKMIYDVGHQAYVHKILTGRQDRFDTLRKKDGLCGFVKRAESEHDVWEAGHSSTSLSAA 122 +DK+I+DVGHQAYVHKILTGR +FD LR+ GLCGF KR ESEHDVWE GHSSTSLSAA Sbjct: 63 KDKLIWDVGHQAYVHKILTGRAGQFDQLRQYKGLCGFPKRDESEHDVWETGHSSTSLSAA 122 Query: 123 MGMAMARDLKGEDNKVIAVIGDGALTGGMAFEALNHIGHERRKLMVILNDNEMSIAPNVG 182 MGMA ARDLKG D VIA+IGDGALTGGMA EALNHIGHE++ L+V+LNDNEMSIAPNVG Sbjct: 123 MGMATARDLKGTDENVIAIIGDGALTGGMALEALNHIGHEQKDLIVVLNDNEMSIAPNVG 182 Query: 183 AMHNYLSKIRSDRHYLRAKDEVEGLLKKIPAIGGRLAKTAQNVKDSLKYMMVPGVLFEEL 242 A+HN L ++R+ Y +AK+++E L+KKIPA GG+LA+ A+ VKDSLKY++V G+ FEE+ Sbjct: 183 ALHNVLGRLRTAGKYQKAKEDLEMLIKKIPAFGGKLAQAAERVKDSLKYLLVSGIFFEEM 242 Query: 243 GFTYLGPVDGHDVEKLIDTFHQADNVSGPVLVHVLTTKGKGYKPAETDFYKS-HAISPYK 301 GFTYLGPVDGHD++ L++ A GPVL+HVLT KGKGY PAE D + H + YK Sbjct: 243 GFTYLGPVDGHDLDDLMENLKYAKKTKGPVLIHVLTKKGKGYAPAENDEKGTWHGVGHYK 302 Query: 302 IESGQSLKAVGNPMYTEVFGETLIELGREDKRLIAVTPAMPGGSGLFPFAKEFPDRMIDV 361 IESG+ +K P Y+ VF ETL ++ R D R++A+T AMPGG+ L FAKEFPDRM DV Sbjct: 303 IESGELVKKPAPPSYSGVFAETLKKIARNDPRIVALTAAMPGGTKLDQFAKEFPDRMFDV 362 Query: 362 GIAEQHAATLCAALAMEGMKPVYAVYSTFMQRAYDQIVHDICRHNANVMFAIDRAGFVGA 421 GIAEQHA T+ LA +G+KPV+AVYSTF+QR YDQ+VHDICR N NV FAIDRAG VGA Sbjct: 363 GIAEQHATTMAGGLATQGLKPVFAVYSTFLQRGYDQVVHDICRQNLNVFFAIDRAGLVGA 422 Query: 422 DGETHQGVYDIAFMRHIPNMVMMMPKDENELRHMMKTALEYNDGPIAYRYPRIDGTGVAL 481 DGETHQGV+DIA++RH+PNM ++MPKDENEL+HM+ TA++Y GPIA RYPR +G G+ + Sbjct: 423 DGETHQGVFDIAYLRHLPNMKILMPKDENELQHMVYTAIQYEGGPIAVRYPRGNGYGIKM 482 Query: 482 DAELKPLPIGTWERLRPGDDYAVLACGPMVQVXXXXXXXXXXXGIQLGVVNARFLKPLDS 541 D LK +PIG+WE L+ G D +L G M+ V G + ++NAR +KPLD Sbjct: 483 DEVLKEIPIGSWEVLQEGTDACILTFGTMIPVAEQASKELSQQGYSIRLINARSVKPLDE 542 Query: 542 SMLLDLAHAGTGMIVLEEACEAGSLGSAVLEFYAEHEIYDARVHLMGVPDIFVEHGSIKE 601 +ML ++A +G ++ LEE GS GSAVLEF+ +H ++ MG+PD F+EHGS+ E Sbjct: 543 AMLHEIAKSGRPVLTLEETAVQGSFGSAVLEFFHDHGYHNVVTQRMGIPDRFIEHGSVSE 602 Query: 602 QRQQTGLTVEAVISRVKAM 620 ++ GLT V +++ + Sbjct: 603 LLEEIGLTSSQVANQLSKL 621 >Q75TG4.1 Q75TG4_BACST 1-deoxyxylulose-5-phosphate synthase EC=2.2.1.7 Length = 630 Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/620 (60%), Positives = 465/620 (75%), Gaps = 2/620 (0%) Query: 3 LPQINDPQQLKALSVEELATLAEEIRRFLIEKLTATGGHLGSNLGVVELTLALHYCYDSP 62 L +I P+ LK +S+ EL L+ EIRRFLIEKL+ TGGH+G NLGVVELT+ALH +DSP Sbjct: 3 LTKIEHPRVLKTMSIPELKQLSAEIRRFLIEKLSKTGGHIGPNLGVVELTIALHREFDSP 62 Query: 63 RDKMIYDVGHQAYVHKILTGRQDRFDTLRKKDGLCGFVKRAESEHDVWEAGHSSTSLSAA 122 +DK+I+DVGHQAYVHKILTGR FDTLR+ GL GF KR+ESEHDVWE GHSSTSLSAA Sbjct: 63 KDKLIWDVGHQAYVHKILTGRAAEFDTLRQYKGLSGFPKRSESEHDVWETGHSSTSLSAA 122 Query: 123 MGMAMARDLKGEDNKVIAVIGDGALTGGMAFEALNHIGHERRKLMVILNDNEMSIAPNVG 182 MGMA+ARDLKG D ++ +IGDGALTGGMA EALNHIGHE+ ++VILNDNEMSIAPNVG Sbjct: 123 MGMAIARDLKGTDEYIVPIIGDGALTGGMALEALNHIGHEKTDMIVILNDNEMSIAPNVG 182 Query: 183 AMHNYLSKIRSDRHYLRAKDEVEGLLKKIPAIGGRLAKTAQNVKDSLKYMMVPGVLFEEL 242 A+HN L ++R+ Y KDE+E LLK+IPA+GG+LA TA+ +KDSLKY++V GV FEEL Sbjct: 183 ALHNILGRLRTAGKYQWVKDELELLLKRIPAVGGKLAATAERLKDSLKYLLVSGVFFEEL 242 Query: 243 GFTYLGPVDGHDVEKLIDTFHQADNVSGPVLVHVLTTKGKGYKPAETDFYKS-HAISPYK 301 GFTYLGPVDGHD E L + A + GPVLVHV+T KGKGY PAE D + H PYK Sbjct: 243 GFTYLGPVDGHDFEDLFENLRYAKKMKGPVLVHVITKKGKGYSPAENDKVGTWHGTGPYK 302 Query: 302 IESGQSLKAV-GNPMYTEVFGETLIELGREDKRLIAVTPAMPGGSGLFPFAKEFPDRMID 360 IE+G +K P ++ + ET+ L R D R++A+TPAMP GS L FA EFPDRM D Sbjct: 303 IETGAFVKTKEAGPSWSALVSETVRRLARTDPRIVAITPAMPVGSKLEGFASEFPDRMFD 362 Query: 361 VGIAEQHAATLCAALAMEGMKPVYAVYSTFMQRAYDQIVHDICRHNANVMFAIDRAGFVG 420 VGIAEQHA TL A LA +GMKP A+YSTF+QRAYDQ+VHD+CR N NV FAIDRAG VG Sbjct: 363 VGIAEQHATTLAAGLATQGMKPFLAIYSTFLQRAYDQVVHDVCRQNLNVFFAIDRAGLVG 422 Query: 421 ADGETHQGVYDIAFMRHIPNMVMMMPKDENELRHMMKTALEYNDGPIAYRYPRIDGTGVA 480 ADGETHQGV+DIAF+RH+PN+V+MMPKDENE +HM+ TA+ Y+DGPIA R+PR +G GV Sbjct: 423 ADGETHQGVFDIAFLRHVPNLVLMMPKDENEGQHMVYTAIRYDDGPIAMRFPRGNGLGVP 482 Query: 481 LDAELKPLPIGTWERLRPGDDYAVLACGPMVQVXXXXXXXXXXXGIQLGVVNARFLKPLD 540 LD ELK +PIGTWE LR G D A+L G + + G+ + VVNARF+KP+D Sbjct: 483 LDEELKEIPIGTWEVLRDGRDAAILTFGTTISMALEAADQLAKEGVSVKVVNARFIKPMD 542 Query: 541 SSMLLDLAHAGTGMIVLEEACEAGSLGSAVLEFYAEHEIYDARVHLMGVPDIFVEHGSIK 600 ++LL+L + ++ +EEA G GSAVLEF + + A + MG+PD F+EHGS+ Sbjct: 543 EAVLLELLESRLPILTIEEAVLQGGFGSAVLEFAHDRGYHQAVIERMGIPDRFIEHGSVS 602 Query: 601 EQRQQTGLTVEAVISRVKAM 620 E ++ GLT ++ R+K M Sbjct: 603 ELLREIGLTAAHIVDRIKTM 622 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,707,677,918 Number of extensions: 158901963 Number of successful extensions: 429413 Number of sequences better than 1.0e-05: 3055 Number of HSP's gapped: 421783 Number of HSP's successfully gapped: 3198 Length of query: 634 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 492 Effective length of database: 1,722,912,073 Effective search space: 847672739916 Effective search space used: 847672739916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)