BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0317.0004.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DM78.1 B1DM78_9BACL Polyprenyl synthetase 281 4e-74 C5D468.1 C5D468_9BACI Polyprenyl synthetase 200 6e-50 A4IQR8.1 A4IQR8_GEOTN Farnesyl diphosphate synthase 196 8e-49 B4BLI2.1 B4BLI2_9BACI Polyprenyl synthetase 196 8e-49 Q75TG5.1 Q75TG5_BACST Geranyltranstransferase EC=2.5.1.10 196 2e-48 >B1DM78.1 B1DM78_9BACL Polyprenyl synthetase Length = 302 Score = 281 bits (718), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 139/200 (69%), Positives = 164/200 (82%), Gaps = 2/200 (1%) Query: 2 VHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEATAILAGDALLTHAFYSVVQASRKHGVP 61 +HTYSL+HDDLPAMDNDDYRRGKLTNHKV+GEA AILAGDALLTHAF+ + + +R G+ Sbjct: 81 IHTYSLVHDDLPAMDNDDYRRGKLTNHKVFGEAMAILAGDALLTHAFHLIPKVARLGGIS 140 Query: 62 AEHALSVVEDLAEMAGPRGMVGGQIADMEGEQGLTSLEQLQXX--XXXGDLIVFSLTAGG 119 AE AL +VEDLA +AG RGMVGGQ ADM+GEQG+TS+E+L+ DLIVFS+TAGG Sbjct: 141 AEVALDIVEDLAMLAGARGMVGGQAADMQGEQGITSIEELEYIHLHKTSDLIVFSVTAGG 200 Query: 120 RIAGADSRQLEALRDFGTHIGLAFQIQDDILDLVGDEGKLGKKTGSDLKQQKVTYPYFIG 179 RI GA + QLEALR +G +IGLAFQIQDDILDL+GDE KLGKKT SD++QQKVTYPY IG Sbjct: 201 RIGGASAEQLEALRHYGRNIGLAFQIQDDILDLIGDEKKLGKKTNSDVEQQKVTYPYLIG 260 Query: 180 LDASRDEVKRLTEAXXXAAL 199 +D S+ +VKRLT A L Sbjct: 261 IDESKAQVKRLTREAKAAIL 280 >C5D468.1 C5D468_9BACI Polyprenyl synthetase Length = 297 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 100/189 (52%), Positives = 135/189 (71%), Gaps = 3/189 (1%) Query: 1 MVHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEATAILAGDALLTHAFYSVVQASRKHGV 60 M+HTYSLIHDDLP+MDNDD RRGK TNHKV+GEA AILAGD LLT+AF + + S V Sbjct: 77 MIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQVIAEMSDARIV 136 Query: 61 PAEHALSVVEDLAEMAGPRGMVGGQIADMEGEQGLTSLEQLQX--XXXXGDLIVFSLTAG 118 PA + ++E+LA+ AGP GMV GQ+AD+EGE SLEQL+ G ++ +S+ AG Sbjct: 137 PAT-KIRLIEELAKAAGPEGMVAGQVADIEGEGKQLSLEQLEYIHRHKTGKMLQYSVLAG 195 Query: 119 GRIAGADSRQLEALRDFGTHIGLAFQIQDDILDLVGDEGKLGKKTGSDLKQQKVTYPYFI 178 +A A QL L F +H+GLAFQI+DDILD+ G E K+GK+ GSD++ +KVTYP + Sbjct: 196 ALLADAKDEQLHHLHTFASHLGLAFQIRDDILDIEGSEEKIGKRVGSDIENKKVTYPSLL 255 Query: 179 GLDASRDEV 187 + +++++ Sbjct: 256 TIAGAKEKL 264 >A4IQR8.1 A4IQR8_GEOTN Farnesyl diphosphate synthase Length = 297 Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 97/189 (51%), Positives = 133/189 (70%), Gaps = 3/189 (1%) Query: 1 MVHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEATAILAGDALLTHAFYSVVQASRKHGV 60 M+HTYSLIHDDLP+MDNDD RRGK TNHKV+GEA AILAGD LLT+AF + + + V Sbjct: 77 MIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLIAEIHDER-V 135 Query: 61 PAEHALSVVEDLAEMAGPRGMVGGQIADMEGEQGLTSLEQLQX--XXXXGDLIVFSLTAG 118 P + L ++ +LA+ AGP GMV GQ+ADMEGE +L +L+ G ++ +S+ AG Sbjct: 136 PVDVRLQLIAELAKAAGPEGMVAGQVADMEGEGKTLALAELEYIHRHKTGKMLQYSVHAG 195 Query: 119 GRIAGADSRQLEALRDFGTHIGLAFQIQDDILDLVGDEGKLGKKTGSDLKQQKVTYPYFI 178 + GAD+RQ+ L +F H+GLAFQI+DDILD+ G E K+GK+ GSD + K TYP + Sbjct: 196 ALLGGADARQMRELNEFAAHLGLAFQIRDDILDIEGTEEKIGKRVGSDRENHKATYPALL 255 Query: 179 GLDASRDEV 187 L +++++ Sbjct: 256 SLAGAKEKL 264 >B4BLI2.1 B4BLI2_9BACI Polyprenyl synthetase Length = 297 Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 97/189 (51%), Positives = 133/189 (70%), Gaps = 3/189 (1%) Query: 1 MVHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEATAILAGDALLTHAFYSVVQASRKHGV 60 M+HTYSLIHDDLP+MDNDD RRGK TNHKV+GEA AILAGD LLT+AF + + + V Sbjct: 77 MIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLIAEIHDER-V 135 Query: 61 PAEHALSVVEDLAEMAGPRGMVGGQIADMEGEQGLTSLEQLQX--XXXXGDLIVFSLTAG 118 P + L ++ +LA+ AGP GMV GQ+ADMEGE +L +L+ G ++ +S+ AG Sbjct: 136 PVDVRLQLIAELAKAAGPEGMVAGQVADMEGEGKTLALAELEYIHRHKTGKMLQYSVHAG 195 Query: 119 GRIAGADSRQLEALRDFGTHIGLAFQIQDDILDLVGDEGKLGKKTGSDLKQQKVTYPYFI 178 + GAD+RQ+ L +F H+GLAFQI+DDILD+ G E K+GK+ GSD + K TYP + Sbjct: 196 ALLGGADARQMRELNEFAAHLGLAFQIRDDILDIEGTEEKIGKRVGSDRENHKATYPALL 255 Query: 179 GLDASRDEV 187 L +++++ Sbjct: 256 SLAGAKEKL 264 >Q75TG5.1 Q75TG5_BACST Geranyltranstransferase EC=2.5.1.10 Length = 319 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 101/195 (51%), Positives = 131/195 (67%), Gaps = 3/195 (1%) Query: 1 MVHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEATAILAGDALLTHAFYSVVQASRKHGV 60 M+HTYSLIHDDLP+MDNDD RRGK TNHKV+GEA AILAGD LLT+AF +V+ + + Sbjct: 77 MIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLIVEIDDER-I 135 Query: 61 PAEHALSVVEDLAEMAGPRGMVGGQIADMEGEQGLTSLEQLQX--XXXXGDLIVFSLTAG 118 P L ++E LA+ AGP GMV GQ ADMEGE +L +L+ G ++ +S+ AG Sbjct: 136 PPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHRHKTGKMLQYSVHAG 195 Query: 119 GRIAGADSRQLEALRDFGTHIGLAFQIQDDILDLVGDEGKLGKKTGSDLKQQKVTYPYFI 178 I GAD+RQ L +F H+GLAFQI+DDILD+ G E K+GK GSD K TYP + Sbjct: 196 ALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATYPALL 255 Query: 179 GLDASRDEVKRLTEA 193 L +++++ EA Sbjct: 256 SLAGAKEKLAFHIEA 270 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,230,740,225 Number of extensions: 47584585 Number of successful extensions: 118624 Number of sequences better than 1.0e-05: 3244 Number of HSP's gapped: 113359 Number of HSP's successfully gapped: 3246 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)