BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0317.0003.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK48.1 B3KK48_9BACI Polyprenyl synthetase                            76   1e-12
A6CG28.1 A6CG28_9PLAN Polyprenyl synthetase                            67   6e-10
Q8DMU1.1 Q8DMU1_THEEB Geranylgeranyl pyrophosphate synthase            66   1e-09
Q9S5F1.1 Q9S5F1_SYNEL Geranylgeranyl diphosphate synthase (SelGGPS)    64   3e-09
Q39UB0.1 Q39UB0_GEOMG Farnesyl-diphosphate synthase EC=2.5.1.10        64   6e-09

>B3KK48.1 B3KK48_9BACI Polyprenyl synthetase
          Length = 185

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%)

Query: 18 RQPLKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPLLVIAACEAL 77
          R  + +Y+ EI   + SE     P  W VP  L  +M+YSL AGGKR+RPLLVIAACEA 
Sbjct: 10 RLTIHQYMNEICDRLDSEFTNLFPSGWKVPETLSRSMSYSLMAGGKRMRPLLVIAACEAG 69

Query: 78 GGSRQAA 84
          GGSR+AA
Sbjct: 70 GGSREAA 76


>A6CG28.1 A6CG28_9PLAN Polyprenyl synthetase
          Length = 298

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 44/66 (66%)

Query: 19 QPLKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPLLVIAACEALG 78
          QP KE  + + +LV  +LE AL +    P  LK AM+YSL AGGKRLRP+LV+ +CEA G
Sbjct: 6  QPFKEMWSNLQTLVNRQLEEALDQSGDCPPILKAAMSYSLSAGGKRLRPILVLLSCEACG 65

Query: 79 GSRQAA 84
          G +  A
Sbjct: 66 GDQSTA 71


>Q8DMU1.1 Q8DMU1_THEEB Geranylgeranyl pyrophosphate synthase
          Length = 307

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 5/76 (6%)

Query: 9  EAEPAGTSLRQPLKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPL 68
          +  PAGT     LK Y+ E  +LV + LEA++P  +  P  + DAM YSL AGGKRLRP+
Sbjct: 8  QVHPAGTF---DLKAYLKERQALVEAALEASIPVAY--PEKIYDAMRYSLMAGGKRLRPI 62

Query: 69 LVIAACEALGGSRQAA 84
          L +A CE +GG+ + A
Sbjct: 63 LCLATCELMGGTVEMA 78


>Q9S5F1.1 Q9S5F1_SYNEL Geranylgeranyl diphosphate synthase (SelGGPS)
          Length = 307

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 5/76 (6%)

Query: 9  EAEPAGTSLRQPLKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPL 68
          +  PAGT     +K Y+ E  +LV + LEA++P  +  P  + DAM YSL AGGKRLRP+
Sbjct: 8  QVHPAGTF---DVKAYLKERQALVEAALEASIPVAY--PEKIYDAMRYSLMAGGKRLRPI 62

Query: 69 LVIAACEALGGSRQAA 84
          L +A CE +GG+ + A
Sbjct: 63 LCLATCELMGGTVEMA 78


>Q39UB0.1 Q39UB0_GEOMG Farnesyl-diphosphate synthase EC=2.5.1.10
          Length = 297

 Score = 63.5 bits (153), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 21 LKEYIAEISSLVMSELEAALPEEWSVPGNLKDAMNYSLQAGGKRLRPLLVIAACEALGGS 80
          LK Y+ E  ++V   LE +LP E  +P ++  AM YS+ AGGKR+RP+L++AACEA+GG+
Sbjct: 3  LKNYLKERCAIVDEALERSLPGEGDLPVSVHRAMRYSVFAGGKRIRPVLMLAACEAVGGT 62


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.131    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 589,885,079
Number of extensions: 20140536
Number of successful extensions: 40019
Number of sequences better than 1.0e-05: 91
Number of HSP's gapped: 40057
Number of HSP's successfully gapped: 91
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)