BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0317.0002.p
         (87 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK47.1 B3KK47_9BACI Exodeoxyribonuclease VII, small subunit         105   1e-21
B1DM79.1 B1DM79_9BACL Exodeoxyribonuclease VII, small subunit          95   2e-18
C0ZC07.1 C0ZC07_BREBN Probable exodeoxyribonuclease VII small su...    85   3e-15
C5D469.1 C5D469_9BACI Exodeoxyribonuclease VII, small subunit          78   2e-13
B7GHG1.1 B7GHG1_ANOFW Exonuclease VII small subunit                    77   4e-13

>B3KK47.1 B3KK47_9BACI Exodeoxyribonuclease VII, small subunit
          Length = 86

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 1/80 (1%)

Query: 1  MAKEAELELDFEGAMERLEEIVRELEHGDVPLEKAIDLFQQGMKLSQLCGNKLEQVERKI 60
          MA E  LE+ FE AM +LE IV +LE GDVPLEKAIDLFQQGMKLSQ+C  KLEQVE+KI
Sbjct: 1  MANET-LEISFEEAMAQLETIVEQLEDGDVPLEKAIDLFQQGMKLSQMCSKKLEQVEQKI 59

Query: 61 EMITEMDGELRKKPFGARLE 80
          EMI E  GEL++KPFG  L+
Sbjct: 60 EMIVEEGGELKRKPFGGTLD 79


>B1DM79.1 B1DM79_9BACL Exodeoxyribonuclease VII, small subunit
          Length = 84

 Score = 94.7 bits (234), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 57/76 (75%)

Query: 1  MAKEAELELDFEGAMERLEEIVRELEHGDVPLEKAIDLFQQGMKLSQLCGNKLEQVERKI 60
          M   A  EL FE AME+LE+IV  LE GDVPLE AIDLFQ+GMKLSQLCG KLEQVERKI
Sbjct: 1  MKAAANSELSFEEAMEQLEKIVERLESGDVPLETAIDLFQEGMKLSQLCGGKLEQVERKI 60

Query: 61 EMITEMDGELRKKPFG 76
          E++ E +   +KK F 
Sbjct: 61 EVLIETEQGFQKKAFA 76


>C0ZC07.1 C0ZC07_BREBN Probable exodeoxyribonuclease VII small subunit
          EC=3.1.11.6
          Length = 84

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 61/80 (76%), Gaps = 2/80 (2%)

Query: 4  EAELELDFEGAMERLEEIVRELEHGDVPLEKAIDLFQQGMKLSQLCGNKLEQVERKIEMI 63
          E E ++ FE AM+RLEE+V  LE GD+PLE+AI L+Q+G+ LS++CG KL+ +E KI  +
Sbjct: 7  EQETDVQFEDAMKRLEEVVNRLEEGDIPLEEAITLYQEGVTLSRICGQKLDAIEAKITQL 66

Query: 64 TEMDGELRKKPFGARLEGDS 83
           E DG++++K F  R+EG+S
Sbjct: 67 VEEDGQVKQKAF--RVEGES 84


>C5D469.1 C5D469_9BACI Exodeoxyribonuclease VII, small subunit
          Length = 77

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 6  ELELDFEGAMERLEEIVRELEHGDVPLEKAIDLFQQGMKLSQLCGNKLEQVERKIEMITE 65
          E EL FE AM++LEEIV +LE G+VPLE+AI  FQ+GMKLS+LC +KL+ VE+++E I  
Sbjct: 4  EKELTFEEAMQKLEEIVEKLEEGNVPLEQAISFFQEGMKLSKLCHDKLQHVEKQMEYILR 63

Query: 66 MDGELRKKPFGAR 78
           DG+L   PF  +
Sbjct: 64 EDGQL--APFSIQ 74


>B7GHG1.1 B7GHG1_ANOFW Exonuclease VII small subunit
          Length = 70

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 54/70 (77%), Gaps = 2/70 (2%)

Query: 9  LDFEGAMERLEEIVRELEHGDVPLEKAIDLFQQGMKLSQLCGNKLEQVERKIEMITEMDG 68
          + FE AM +LEEIV++LE GDVPLE+AI  FQ+GMKLS+ C +KL+QVE+++E I   DG
Sbjct: 1  MTFEEAMNKLEEIVQKLEEGDVPLEEAIHFFQEGMKLSKFCHDKLQQVEKQMEFILREDG 60

Query: 69 ELRKKPFGAR 78
          +L  +PF  +
Sbjct: 61 QL--EPFTVQ 68


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 496,304,861
Number of extensions: 16918997
Number of successful extensions: 54321
Number of sequences better than 1.0e-05: 451
Number of HSP's gapped: 54321
Number of HSP's successfully gapped: 451
Length of query: 87
Length of database: 3,060,696,203
Length adjustment: 57
Effective length of query: 30
Effective length of database: 2,523,698,348
Effective search space: 75710950440
Effective search space used: 75710950440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)