BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0317.0001.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KK46.1 B3KK46_9BACI Exodeoxyribonuclease 7 large subunit EC=3....   115   1e-24
B1DM80.1 B1DM80_9BACL Exodeoxyribonuclease 7 large subunit EC=3....    97   4e-19
C5D471.1 C5D471_9BACI Exodeoxyribonuclease VII, large subunit EC...    89   1e-16
C3AQE0.1 C3AQE0_BACMY Exodeoxyribonuclease 7 large subunit             82   2e-14
C3IP41.1 C3IP41_BACTU Exodeoxyribonuclease 7 large subunit             82   2e-14

>B3KK46.1 B3KK46_9BACI Exodeoxyribonuclease 7 large subunit EC=3.1.11.6
          Length = 461

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 66/75 (88%)

Query: 1   MQVRLQEKRSRFAAELRHLDALSPLKVMSRGYSLVYDEKEEHLIKSLKEVELGDVVNIKL 60
           MQ  ++ K S+   E+RHLDALSPLK+MSRGYSLVYDEKE+ L+KS+++V+LGD+VN+++
Sbjct: 382 MQSIMKSKMSQLQTEMRHLDALSPLKIMSRGYSLVYDEKEQKLVKSIEDVQLGDLVNVRV 441

Query: 61  NDGQLSCQVWGMRED 75
           NDGQL CQVWGM+ED
Sbjct: 442 NDGQLQCQVWGMKED 456


>B1DM80.1 B1DM80_9BACL Exodeoxyribonuclease 7 large subunit EC=3.1.11.6
          Length = 457

 Score = 97.4 bits (241), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 46/79 (58%), Positives = 64/79 (81%), Gaps = 2/79 (2%)

Query: 5   LQEKRSRFAAELRHLDALSPLKVMSRGYSLVYDEKEEHLIKSLKEVELGDVVNIKLNDGQ 64
           L+E+R +  + +R LDALSPLKVM+RGYSLVYDE+E+ LIKS+ +V+ GD+V +K+ DGQ
Sbjct: 379 LKERRLQLQSAIRQLDALSPLKVMARGYSLVYDEQEKRLIKSIADVQPGDLVRVKVADGQ 438

Query: 65  LSCQVWGMR-EDGI-TNGE 81
           L C VW M+ EDG+ ++GE
Sbjct: 439 LDCHVWSMKGEDGVESSGE 457


>C5D471.1 C5D471_9BACI Exodeoxyribonuclease VII, large subunit EC=3.1.11.6
          Length = 453

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 1   MQVRLQEKRSRFAAELRHLDALSPLKVMSRGYSLVYDEKEEHLIKSLKEVELGDVVNIKL 60
           M+  +  ++ RF + + HL ALSPLK+M RGYSLVY+EK+E L+KS+++++LGD + ++L
Sbjct: 374 MRSHIHHQQLRFTSLVSHLHALSPLKIMERGYSLVYNEKKE-LVKSIRQLQLGDTIQVRL 432

Query: 61  NDGQLSCQVWGMRE 74
            DGQ+ C VWGM E
Sbjct: 433 QDGQIDCHVWGMEE 446


>C3AQE0.1 C3AQE0_BACMY Exodeoxyribonuclease 7 large subunit
          Length = 353

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 57/81 (70%), Gaps = 1/81 (1%)

Query: 1   MQVRLQEKRSRFAAELRHLDALSPLKVMSRGYSLVYDEKEEHLIKSLKEVELGDVVNIKL 60
           MQ  LQ K   F    + L+ALSPLKVM RGY LVY EK++ ++KS+K+V+LGDVV+++L
Sbjct: 274 MQTLLQTKEFAFMRAAQKLEALSPLKVMMRGYGLVYSEKKQ-VLKSVKDVDLGDVVSVQL 332

Query: 61  NDGQLSCQVWGMREDGITNGE 81
            DG L C V G+ E  + NG+
Sbjct: 333 QDGVLDCNVSGIEERELNNGK 353


>C3IP41.1 C3IP41_BACTU Exodeoxyribonuclease 7 large subunit
          Length = 452

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 55/81 (67%), Gaps = 1/81 (1%)

Query: 1   MQVRLQEKRSRFAAELRHLDALSPLKVMSRGYSLVYDEKEEHLIKSLKEVELGDVVNIKL 60
           MQ  LQ K   F    + L+ALSPLKVM RGY LVYDE E+ ++KS+K+V LGD V+++L
Sbjct: 373 MQTLLQTKEFAFVRAAQKLEALSPLKVMMRGYGLVYDE-EKQVLKSVKDVSLGDAVSVQL 431

Query: 61  NDGQLSCQVWGMREDGITNGE 81
            DG L C V G+ E  + NG+
Sbjct: 432 QDGILDCSVSGIEERELNNGK 452


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 473,992,758
Number of extensions: 15653629
Number of successful extensions: 37386
Number of sequences better than 1.0e-05: 154
Number of HSP's gapped: 37633
Number of HSP's successfully gapped: 154
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)