BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0315.0009.p (216 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3AZF0.1 C3AZF0_BACMY Polar amino acid ABC transporter, inner me... 307 4e-82 C3AHJ2.1 C3AHJ2_BACMY Polar amino acid ABC transporter, inner me... 307 4e-82 C3BFY5.1 C3BFY5_9BACI Polar amino acid ABC transporter, inner me... 307 4e-82 C3GWF5.1 C3GWF5_BACTU Polar amino acid ABC transporter, inner me... 301 2e-80 C2PR97.1 C2PR97_BACCE Polar amino acid ABC transporter, inner me... 301 2e-80 >C3AZF0.1 C3AZF0_BACMY Polar amino acid ABC transporter, inner membrane subunit Length = 214 Score = 307 bits (787), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 151/214 (70%), Positives = 184/214 (85%) Query: 1 LDFAGAFSADNLKFLLDGLYVTLIVAFVSIILSFVIGCVIGVVRYAGIPVLSPVMFYLVE 60 +DF GA++ D++ FLL GL VTL +A V+I+LSF+IG ++G +RYA IPV+S ++ ++VE Sbjct: 1 MDFRGAYTGDHVLFLLKGLLVTLEIAVVAILLSFIIGSIVGTLRYAKIPVVSQLLAFIVE 60 Query: 61 LIRNLPLLLIIFFVRFALPEVGIKMSLITAAIVALTIFEAAMIAEIVRGGLTSIDKGQIE 120 +IRNLPLLLIIFF FALPE G+K+ + TAAIVALTIFEAAMI+EIVR GL SI+KGQIE Sbjct: 61 IIRNLPLLLIIFFTYFALPEAGLKLEITTAAIVALTIFEAAMISEIVRSGLLSIEKGQIE 120 Query: 121 AARSSGLSSFQTLWHIVLPQGLRRMVPPLVSQFISLLKDTSLAVVISLPELMHNANIVIG 180 AAR+SGLS QTLWHI+LPQ LRRMVPPLVSQFISLLKDTSLAVVISLPELMHNA I+ G Sbjct: 121 AARASGLSYIQTLWHIILPQALRRMVPPLVSQFISLLKDTSLAVVISLPELMHNAQIING 180 Query: 181 HSYSYAIPTLMLVALIYFAVNYMLSVVSRKLENK 214 + +Y IPTL+LVA +YF VNY LS+VSRKLE++ Sbjct: 181 QNVNYMIPTLLLVACMYFVVNYSLSLVSRKLESR 214 >C3AHJ2.1 C3AHJ2_BACMY Polar amino acid ABC transporter, inner membrane subunit Length = 214 Score = 307 bits (787), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 151/214 (70%), Positives = 184/214 (85%) Query: 1 LDFAGAFSADNLKFLLDGLYVTLIVAFVSIILSFVIGCVIGVVRYAGIPVLSPVMFYLVE 60 +DF GA++ D++ FLL GL VTL +A V+I+LSF+IG ++G +RYA IPV+S ++ ++VE Sbjct: 1 MDFRGAYTGDHVLFLLKGLLVTLEIAVVAILLSFIIGSIVGTLRYAKIPVVSQLLAFIVE 60 Query: 61 LIRNLPLLLIIFFVRFALPEVGIKMSLITAAIVALTIFEAAMIAEIVRGGLTSIDKGQIE 120 +IRNLPLLLIIFF FALPE G+K+ + TAAIVALTIFEAAMI+EIVR GL SI+KGQIE Sbjct: 61 IIRNLPLLLIIFFTYFALPEAGLKLEITTAAIVALTIFEAAMISEIVRSGLLSIEKGQIE 120 Query: 121 AARSSGLSSFQTLWHIVLPQGLRRMVPPLVSQFISLLKDTSLAVVISLPELMHNANIVIG 180 AAR+SGLS QTLWHI+LPQ LRRMVPPLVSQFISLLKDTSLAVVISLPELMHNA I+ G Sbjct: 121 AARASGLSYIQTLWHIILPQALRRMVPPLVSQFISLLKDTSLAVVISLPELMHNAQIING 180 Query: 181 HSYSYAIPTLMLVALIYFAVNYMLSVVSRKLENK 214 + +Y IPTL+LVA +YF VNY LS+VSRKLE++ Sbjct: 181 QNVNYMIPTLLLVACMYFVVNYSLSLVSRKLESR 214 >C3BFY5.1 C3BFY5_9BACI Polar amino acid ABC transporter, inner membrane subunit Length = 214 Score = 307 bits (786), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 151/214 (70%), Positives = 184/214 (85%) Query: 1 LDFAGAFSADNLKFLLDGLYVTLIVAFVSIILSFVIGCVIGVVRYAGIPVLSPVMFYLVE 60 +DF GA++ D++ FLL GL VTL +A V+I+LSF+IG ++G +RYA IPV+S ++ ++VE Sbjct: 1 MDFRGAYTGDHVLFLLKGLLVTLEIAVVAILLSFIIGSIVGTLRYAKIPVVSQLLAFIVE 60 Query: 61 LIRNLPLLLIIFFVRFALPEVGIKMSLITAAIVALTIFEAAMIAEIVRGGLTSIDKGQIE 120 +IRNLPLLLIIFF FALPE G+K+ + TAAIVALTIFEAAMI+EIVR GL SI+KGQIE Sbjct: 61 IIRNLPLLLIIFFTYFALPEAGLKLEITTAAIVALTIFEAAMISEIVRSGLLSIEKGQIE 120 Query: 121 AARSSGLSSFQTLWHIVLPQGLRRMVPPLVSQFISLLKDTSLAVVISLPELMHNANIVIG 180 AAR+SGLS QTLWHI+LPQ LRRMVPPLVSQFISLLKDTSLAVVISLPELMHNA I+ G Sbjct: 121 AARASGLSYTQTLWHIILPQALRRMVPPLVSQFISLLKDTSLAVVISLPELMHNAQIING 180 Query: 181 HSYSYAIPTLMLVALIYFAVNYMLSVVSRKLENK 214 + +Y IPTL+LVA +YF VNY LS+VSRKLE++ Sbjct: 181 QNVNYMIPTLLLVACMYFVVNYSLSLVSRKLESR 214 >C3GWF5.1 C3GWF5_BACTU Polar amino acid ABC transporter, inner membrane subunit Length = 214 Score = 301 bits (772), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 149/212 (70%), Positives = 179/212 (84%) Query: 1 LDFAGAFSADNLKFLLDGLYVTLIVAFVSIILSFVIGCVIGVVRYAGIPVLSPVMFYLVE 60 +DF GA + D++ FLL GL +TL VA ++I+LSF+IG VIG++RY IPV+S V+ +VE Sbjct: 1 MDFKGAITGDHILFLLKGLLITLEVALIAIVLSFIIGSVIGILRYTKIPVVSQVLGVIVE 60 Query: 61 LIRNLPLLLIIFFVRFALPEVGIKMSLITAAIVALTIFEAAMIAEIVRGGLTSIDKGQIE 120 LIRNLPLLLIIFF FALPE G+K+ +ITAAIVALTIFEAAMI+EIVR GL SI+KGQ+E Sbjct: 61 LIRNLPLLLIIFFTYFALPEAGLKLEIITAAIVALTIFEAAMISEIVRSGLLSIEKGQVE 120 Query: 121 AARSSGLSSFQTLWHIVLPQGLRRMVPPLVSQFISLLKDTSLAVVISLPELMHNANIVIG 180 AARSSGL+ Q LWHI+LPQ LRRMVPPLVSQFISLLKDTSLAVVISLPELMHNA I+ G Sbjct: 121 AARSSGLTYVQALWHIILPQALRRMVPPLVSQFISLLKDTSLAVVISLPELMHNAQIISG 180 Query: 181 HSYSYAIPTLMLVALIYFAVNYMLSVVSRKLE 212 + +Y IPT +LVA +YF VNY LS++SR+LE Sbjct: 181 QNVNYMIPTFILVACMYFIVNYSLSILSRRLE 212 >C2PR97.1 C2PR97_BACCE Polar amino acid ABC transporter, inner membrane subunit Length = 214 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 148/212 (69%), Positives = 180/212 (84%) Query: 1 LDFAGAFSADNLKFLLDGLYVTLIVAFVSIILSFVIGCVIGVVRYAGIPVLSPVMFYLVE 60 +DF GA + D++ FLL GL +TL VA ++I+LSF+IG VIG++RY IPV+S ++ ++VE Sbjct: 1 MDFKGAITGDHILFLLKGLLITLEVALIAIVLSFIIGSVIGILRYTKIPVVSQILGFIVE 60 Query: 61 LIRNLPLLLIIFFVRFALPEVGIKMSLITAAIVALTIFEAAMIAEIVRGGLTSIDKGQIE 120 +IRNLPLLLIIFF FALPEVG+K+ +ITAAIVALTIFEAAMI+EIVR GL SI+KGQIE Sbjct: 61 VIRNLPLLLIIFFTYFALPEVGLKLEIITAAIVALTIFEAAMISEIVRSGLLSIEKGQIE 120 Query: 121 AARSSGLSSFQTLWHIVLPQGLRRMVPPLVSQFISLLKDTSLAVVISLPELMHNANIVIG 180 AARSSGL+ Q LWHI+LPQ LRRMVPPLVSQFISLLKDTSLAVVISLPELMHNA I+ G Sbjct: 121 AARSSGLTYVQALWHIILPQALRRMVPPLVSQFISLLKDTSLAVVISLPELMHNAQIISG 180 Query: 181 HSYSYAIPTLMLVALIYFAVNYMLSVVSRKLE 212 + +Y IPT +L A +YF VNY LS++SR+LE Sbjct: 181 QNVNYMIPTFILAACMYFVVNYGLSILSRRLE 212 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,080,587,261 Number of extensions: 40497052 Number of successful extensions: 222929 Number of sequences better than 1.0e-05: 8738 Number of HSP's gapped: 217744 Number of HSP's successfully gapped: 8751 Length of query: 216 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 86 Effective length of database: 1,835,964,253 Effective search space: 157892925758 Effective search space used: 157892925758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)