BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0315.0007.p (300 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DI83.1 B1DI83_9BACL Response regulator receiver protein 335 4e-90 B1HS60.1 B1HS60_LYSSC Sensory transduction protein 275 3e-72 A3IDF4.1 A3IDF4_9BACI YcbB 275 3e-72 C5DAG9.1 C5DAG9_9BACI Response regulator receiver protein 238 6e-61 Q5WJZ2.1 Q5WJZ2_BACSK Two-component response regulator 230 2e-58 >B1DI83.1 B1DI83_9BACL Response regulator receiver protein Length = 299 Score = 335 bits (858), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 167/297 (56%), Positives = 219/297 (73%), Gaps = 1/297 (0%) Query: 3 LSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSENPDIVLMDLLMPDQD 62 LSFCIVDDD +RRMLQ IIE G+GEV G A G +G RL+L ENPD+VL+DLLMPDQD Sbjct: 2 LSFCIVDDDAVSRRMLQTIIEKGGVGEVRGMASGGVEGKRLVLDENPDVVLIDLLMPDQD 61 Query: 63 GIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHKINER 122 GIETI L+ +G K+VMISQIEN +M+S+AY++GIEF+I+KPIN++EV++VL K++E+ Sbjct: 62 GIETIARLKQEGYDGKYVMISQIENKEMISKAYQAGIEFYIQKPINRVEVKAVLGKVSEQ 121 Query: 123 YALGRYLDEIKLSLGKLEGLQFGLPPVQASKRTVKEIIQPILMNMGMISESGSRDIITIM 182 + + RYL EIK S+ KL+ L + K KE ++ ILM+MG++ ESGS DII + Sbjct: 122 WRMARYLKEIKQSIAKLDELNSEHAGTR-RKHDAKETMRMILMDMGIVGESGSHDIIEMT 180 Query: 183 ELAAAKENTDSLPPLKELYEMAAATYKTVPAEAAKEVKAIEQRLRRALAAGLTNLASIGI 242 + PPLK LYE+ A K ++ KE KA+EQR+RR + A L+NLASIG+ Sbjct: 181 SWLIGRHQGGGFPPLKLLYEVGARASKPEGSDIEKEGKAVEQRVRRTVIAALSNLASIGL 240 Query: 243 TDYGNPKFEYYAPLYFDFEEVRLKMKEIEQGRESGKVKVNIKKFLQVLHLELMEGMN 299 TDYG+PKFE+YAPLYFDFE+VRLKM+EI++ K KVNIKKFLQVL+LE ++ M Sbjct: 241 TDYGHPKFEHYAPLYFDFEDVRLKMREIDEKCPQEKRKVNIKKFLQVLYLETLDKMK 297 >B1HS60.1 B1HS60_LYSSC Sensory transduction protein Length = 292 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 150/298 (50%), Positives = 197/298 (66%), Gaps = 7/298 (2%) Query: 3 LSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSENPDIVLMDLLMPDQD 62 + + IVDDD A+R ML+ IIEDSGLG V G A +G+D + IL P+ VL+DLLMP D Sbjct: 1 MRYFIVDDDRASRVMLKQIIEDSGLGTVIGEARNGEDAIPQILMTQPEFVLIDLLMPKLD 60 Query: 63 GIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHKINER 122 GI T+ L +F+MISQ+ N +MV AY GIEFFI KPIN+IEVE+VL K E+ Sbjct: 61 GIATVEHLIQNRFEGQFIMISQVVNKEMVGEAYEQGIEFFIHKPINRIEVENVLKKTTEQ 120 Query: 123 YALGRYLDEIKLSLGKLEGLQFGLPPVQASKRTVKEIIQPILMNMGMISESGSRDIITIM 182 + L L I+ SL +E L +A+K T ++ IQ IL +MG++ E GS DII I+ Sbjct: 121 FRLKNSLLVIRQSLTNIE-----LSEQKANKATSRDHIQSILNDMGIVGEIGSEDIIAII 175 Query: 183 E-LAAAKENTDSLPPLKELYEMAAATYKTVPAEAAKEVKAIEQRLRRALAAGLTNLASIG 241 E L A + LPPLKELYE AA K P E KE KAIEQR+RR + A + NLA++G Sbjct: 176 ETLLAHQHKIAPLPPLKELYEEIAAVTKATPDEILKESKAIEQRVRRTILAAMINLANLG 235 Query: 242 ITDYGNPKFEYYAPLYFDFEEVRLKMKEIEQGRESGKVKVNIKKFLQVLHLELMEGMN 299 + DY N +FEYYAP YFDF+E+R M +IE ++ K KVNIKKF+QVL+ +++ +N Sbjct: 236 VVDYTNSEFEYYAPRYFDFKEIRQLMTQIE-DHDNRKAKVNIKKFIQVLYSDILTKVN 292 >A3IDF4.1 A3IDF4_9BACI YcbB Length = 292 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 149/298 (50%), Positives = 198/298 (66%), Gaps = 7/298 (2%) Query: 3 LSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSENPDIVLMDLLMPDQD 62 + + IVDDD A+R ML+ IIEDSGLG V G A +G+D + IL P+IVL+DLLMP D Sbjct: 1 MRYFIVDDDRASRVMLKQIIEDSGLGTVIGEARNGEDAIPQILMTQPEIVLIDLLMPKLD 60 Query: 63 GIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHKINER 122 GI T+ L +F+MISQ+ N +MV AY GI+FFI KPIN+IEVE+VL K E+ Sbjct: 61 GIATVEHLIQNRFEGQFIMISQVVNKEMVGEAYEQGIDFFIHKPINRIEVENVLKKTTEQ 120 Query: 123 YALGRYLDEIKLSLGKLEGLQFGLPPVQASKRTVKEIIQPILMNMGMISESGSRDIITIM 182 + L L I+ SL +E L +A+K T ++ IQ IL +MG++ E GS DII I+ Sbjct: 121 FRLKNSLLVIRQSLTNIE-----LSEQKANKATSRDHIQSILNDMGIVGEIGSEDIIAII 175 Query: 183 E-LAAAKENTDSLPPLKELYEMAAATYKTVPAEAAKEVKAIEQRLRRALAAGLTNLASIG 241 E L A + LPPLKELYE AA K P + KE KAIEQR+RR + A + NLA++G Sbjct: 176 ETLLAHQHKIAPLPPLKELYEEIAAVTKATPDDILKESKAIEQRVRRTILAAMINLANLG 235 Query: 242 ITDYGNPKFEYYAPLYFDFEEVRLKMKEIEQGRESGKVKVNIKKFLQVLHLELMEGMN 299 + DY N +FEYYAP YFDF+E+R M +IE ++ K KVNIKKF+QVL+ +++ +N Sbjct: 236 VVDYTNSEFEYYAPRYFDFKEIRQLMTQIE-DHDNRKAKVNIKKFIQVLYSDILTKLN 292 >C5DAG9.1 C5DAG9_9BACI Response regulator receiver protein Length = 302 Score = 238 bits (607), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 197/302 (65%), Gaps = 11/302 (3%) Query: 1 MPLSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSE--NPDIVLMDLLM 58 MPL F +++DD R+ML+ II ++ LGEV G AE DG+ + + + D+VL+DLLM Sbjct: 1 MPLRFFLIEDDAVVRKMLEKIITENQLGEVVGEAE---DGLNVTADQLYSVDVVLIDLLM 57 Query: 59 PDQDGIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHK 118 P +DGI+T+ L+ +G + +FVMISQ+EN +M+ +AY G++ +I+KPIN+ EV +VL + Sbjct: 58 PGRDGIQTMKKLREEGFKGQFVMISQVENKEMIGQAYLHGVDTYIQKPINRYEVVAVLRR 117 Query: 119 INERYALGRYLDEIKLSLGKLEGLQFGLPPVQASKRT-VKEIIQPILMNMGMISESGSRD 177 + E ++ LD I+ L L+ P+ ++T ++ +Q +L+ +G+ E+G+ D Sbjct: 118 VAEHISISHSLDSIRQLLKALDQTATTASPLHQKEQTQLEHQVQHLLLLLGIAGEAGAAD 177 Query: 178 IITIMELAAAKE----NTDSLPPLKELY-EMAAATYKTVPAEAAKEVKAIEQRLRRALAA 232 ++ IM A KE LP LKELY E+ T+ + KEV+A+EQR+RR + Sbjct: 178 LLLIMRHLAEKEKLGQTIHELPSLKELYTELVRQTHHHHESTIQKEVRAMEQRIRRMVLQ 237 Query: 233 GLTNLASIGITDYGNPKFEYYAPLYFDFEEVRLKMKEIEQGRESGKVKVNIKKFLQVLHL 292 T+L+S+G+TDY NP FE++AP FDFEEVR +MKE+E G ++ K ++N++KFL ++ Sbjct: 238 AFTHLSSLGLTDYTNPTFEHFAPRLFDFEEVRKRMKELEAGEKTTKCRINVRKFLTAFYM 297 Query: 293 EL 294 EL Sbjct: 298 EL 299 >Q5WJZ2.1 Q5WJZ2_BACSK Two-component response regulator Length = 289 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/290 (44%), Positives = 184/290 (63%), Gaps = 15/290 (5%) Query: 3 LSFCIVDDDGAARRMLQHIIEDSGLGEVAGTAESGQDGVRLILSENPDIVLMDLLMPDQD 62 ++F I+DD+ RRML II+ +GLGE+ + E + I++ PDIVL+DLLMP D Sbjct: 2 ITFAIIDDEPGCRRMLASIIKKTGLGEIVLSDEGNAASIHAIIARQPDIVLIDLLMPKID 61 Query: 63 GIETIISLQSQGCRSKFVMISQIENGDMVSRAYRSGIEFFIRKPINKIEVESVLHKINER 122 G++ I L++ G R +FVMISQ +N ++V AY+ G+EFFI KPI+ IEVESVL + + Sbjct: 62 GLDMIEQLKTAGYRGRFVMISQNDNKELVGEAYQLGVEFFIHKPIHAIEVESVLSYVKRQ 121 Query: 123 YALGRYLDEIKLSLGKLEGLQFGLPPVQ-ASKRTVKEIIQPILMNMGMISESGSRDIITI 181 L L E++L+L + +Q A++RT+ E +G+ +E+G++D I Sbjct: 122 --LQPSLPEMQLALAHVSHATHPHVALQRAARRTLAE--------LGISNEAGAKDFIHA 171 Query: 182 MELAAAKENTDSLP-PLKELYEMAAATYKTVPAEAAKEVKAIEQRLRRALAAGLTNLASI 240 M+ A T S P L+ LY+ A + P + KE KAIEQR+RRA+ LTN+AS+ Sbjct: 172 MDYLA---ETGSEPLSLRTLYKKMALARFSKPIDQEKEAKAIEQRMRRAVGKALTNIASL 228 Query: 241 GITDYGNPKFEYYAPLYFDFEEVRLKMKEIEQGRESGKVKVNIKKFLQVL 290 G+TDY +PKFEYYAPL+FDF EVR +MKEI+ V+++IKKFL L Sbjct: 229 GLTDYAHPKFEYYAPLFFDFREVRQRMKEIDLDMAHSVVRIHIKKFLFAL 278 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,609,066,089 Number of extensions: 62953098 Number of successful extensions: 248357 Number of sequences better than 1.0e-05: 2700 Number of HSP's gapped: 257284 Number of HSP's successfully gapped: 2700 Length of query: 300 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 165 Effective length of database: 1,788,859,178 Effective search space: 295161764370 Effective search space used: 295161764370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)