BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0315.0006.p (319 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAC5.1 B3KAC5_9BACI Magnesium and cobalt transport protein CorA 409 e-112 C5D815.1 C5D815_9BACI Magnesium and cobalt transport protein CorA 355 3e-96 C3J0J1.1 C3J0J1_9BACI Magnesium and cobalt transport protein CorA 355 3e-96 B7Y955.1 B7Y955_9BACI Magnesium and cobalt transport protein CorA 355 3e-96 Q5L158.1 Q5L158_GEOKA Divalent cation transport protein 355 3e-96 >B3KAC5.1 B3KAC5_9BACI Magnesium and cobalt transport protein CorA Length = 318 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/319 (64%), Positives = 247/319 (77%), Gaps = 1/319 (0%) Query: 1 MIRTLAVTHTGEVLTDLPLQDITIADYAWVWADFSTPTAEETLLLDTYFHFHPLAIEDCM 60 MIR LA+T + E +T L L++I + DYAW+WADFS PT EE L+TYFHFHPLA+EDC+ Sbjct: 1 MIRVLAITPSYEPVTGLTLEEIRMEDYAWIWADFSNPTPEEARKLETYFHFHPLAVEDCL 60 Query: 61 HILQRPKLDYYEDVQFFVLHALNERTLEAEEIDLFLSKRFLVSYHHQEKQEMEEAWQMVK 120 H+LQRPKLDYY+++QFFVLHAL TL+A E+D+FL+ F+VS+H Q EM+EAW+ V Sbjct: 61 HVLQRPKLDYYDNMQFFVLHALQPDTLQAVEVDVFLAPSFVVSFHQQALPEMDEAWERVL 120 Query: 121 AEIPSRKGWSGGPMAAAYTVMDKLVDRYFPSLYSLEDELADLESQGGSESVEELMSQVFN 180 + GP AYT+MDKLVD+YFPSL+++EDELA+LESQG +SVE+LM+QVF Sbjct: 121 SAAGKGPLGQDGPSFTAYTIMDKLVDQYFPSLFAIEDELAELESQGEKDSVEDLMNQVFA 180 Query: 181 VRGRLLKLRRTIVPMRDLMYRILNSQHVQSNGEERIYFGDIYDHLLKLTDMIEVDREMTA 240 +R RLL+LRRT+VPMRDL+YRI+NSQH++ + YF DIYDHLLKL DMIE DREMTA Sbjct: 181 LRSRLLRLRRTVVPMRDLLYRIVNSQHMEHHA-HHAYFSDIYDHLLKLADMIEADREMTA 239 Query: 241 DLRDSYISLNSNRMNSIMKTLTVITTIFMPLTLIAGIYGMNFRVMPELDWKYGYFXXXXX 300 DLRDSYIS+NSNRMN+IMKTLTVITTIFMPLTLIAGIYGMNF MPEL W YGYF Sbjct: 240 DLRDSYISVNSNRMNTIMKTLTVITTIFMPLTLIAGIYGMNFENMPELGWHYGYFFVLLL 299 Query: 301 XXXXXXXXXRWFRRSGWFK 319 WF R GWFK Sbjct: 300 MFVLGGGMVLWFMRRGWFK 318 >C5D815.1 C5D815_9BACI Magnesium and cobalt transport protein CorA Length = 325 Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/319 (52%), Positives = 219/319 (68%), Gaps = 4/319 (1%) Query: 1 MIRTLAVTHTGEVLTDLPLQDITIADYAWVWADFSTPTAEETLLLDTYFHFHPLAIEDCM 60 MIRT +T EV+ D+PL + D +W W DF PT E LL +FHFHPLAIEDC+ Sbjct: 1 MIRTCVITKEFEVIYDVPLSFVNSPDVSWYWVDFHEPTENEAKLLADFFHFHPLAIEDCL 60 Query: 61 HILQRPKLDYYEDVQFFVLHALNERTLEAEEIDLFLSKRFLVSYHHQEKQEMEEAWQMVK 120 +QRPKLD+Y+ F VLHA++ +LEAEE+DLF+ + F+VS+H Q + E W +K Sbjct: 61 EYVQRPKLDFYDRYLFVVLHAIDGNSLEAEEVDLFVGQNFVVSFHKQSIHAVNEVWTRIK 120 Query: 121 AEIPSRKGWSGGPMAAAYTVMDKLVDRYFPSLYSLEDELADLESQGGSESVEELMSQVFN 180 + + + GP Y ++DKLVD YFP +Y +ED L +LE E V++++ +VF+ Sbjct: 121 ND----EDFQQGPFHVMYRIIDKLVDDYFPPIYHIEDVLNELEENTNDEEVQDIIEKVFD 176 Query: 181 VRGRLLKLRRTIVPMRDLMYRILNSQHVQSNGEERIYFGDIYDHLLKLTDMIEVDREMTA 240 +R L KLRRTIVPMRDL+YRI++S Q E ++YF DIYDHLLKL +MIE +RE+T+ Sbjct: 177 IRSDLSKLRRTIVPMRDLLYRIIHSDRFQRMKERQLYFHDIYDHLLKLVEMIETNREITS 236 Query: 241 DLRDSYISLNSNRMNSIMKTLTVITTIFMPLTLIAGIYGMNFRVMPELDWKYGYFXXXXX 300 D+RDSY+SL SN+MN+IM TLTVITTIFMPLT IAGIYGMNF MPEL WKYGYF Sbjct: 237 DIRDSYLSLTSNQMNTIMMTLTVITTIFMPLTFIAGIYGMNFDNMPELHWKYGYFMVLGV 296 Query: 301 XXXXXXXXXRWFRRSGWFK 319 WF+R+GWF+ Sbjct: 297 MAVITILMFFWFKRNGWFR 315 >C3J0J1.1 C3J0J1_9BACI Magnesium and cobalt transport protein CorA Length = 333 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 171/319 (53%), Positives = 221/319 (69%), Gaps = 4/319 (1%) Query: 1 MIRTLAVTHTGEVLTDLPLQDITIADYAWVWADFSTPTAEETLLLDTYFHFHPLAIEDCM 60 MIRT VT E+L D+ L + D +W W DF PT EE+ LL ++F FHPLAIEDC+ Sbjct: 4 MIRTCVVTKEFEILYDVDLTLVNSPDVSWYWVDFHEPTDEESALLASFFRFHPLAIEDCL 63 Query: 61 HILQRPKLDYYEDVQFFVLHALNERTLEAEEIDLFLSKRFLVSYHHQEKQEMEEAWQMVK 120 +QRPKLD+Y+ F VLHA+ TLEAEE+DLF+ + F+VS+H ++E W+ +K Sbjct: 64 EYVQRPKLDFYDRYLFVVLHAIAGMTLEAEEVDLFVGQNFIVSFHKSPIHAVDEVWERLK 123 Query: 121 AEIPSRKGWSGGPMAAAYTVMDKLVDRYFPSLYSLEDELADLESQGGSESVEELMSQVFN 180 E + GP Y ++DKLVD YFP LY +ED L DLE +E + +++ +VF+ Sbjct: 124 HE----EDVQQGPFHVMYRLIDKLVDDYFPPLYHIEDVLNDLEENTNNEPIHDIIEKVFD 179 Query: 181 VRGRLLKLRRTIVPMRDLMYRILNSQHVQSNGEERIYFGDIYDHLLKLTDMIEVDREMTA 240 +RG L KLRRTIVPMRDL+YRI++S +Q E ++YF DIYDHLLKL++MIE +RE+TA Sbjct: 180 IRGDLSKLRRTIVPMRDLLYRIIHSDRLQRMKERQLYFHDIYDHLLKLSEMIETNREITA 239 Query: 241 DLRDSYISLNSNRMNSIMKTLTVITTIFMPLTLIAGIYGMNFRVMPELDWKYGYFXXXXX 300 D+RDSY+SLNSNRMN+IM T T ITTIFMPL+ IAGIYGMNF MPEL WKYGYF Sbjct: 240 DIRDSYLSLNSNRMNNIMMTFTAITTIFMPLSFIAGIYGMNFDYMPELHWKYGYFVVLAA 299 Query: 301 XXXXXXXXXRWFRRSGWFK 319 WF+R+GWF+ Sbjct: 300 MAVIGMTMFVWFKRNGWFQ 318 >B7Y955.1 B7Y955_9BACI Magnesium and cobalt transport protein CorA Length = 333 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 171/319 (53%), Positives = 221/319 (69%), Gaps = 4/319 (1%) Query: 1 MIRTLAVTHTGEVLTDLPLQDITIADYAWVWADFSTPTAEETLLLDTYFHFHPLAIEDCM 60 MIRT VT E+L D+ L + D +W W DF PT EE+ LL ++F FHPLAIEDC+ Sbjct: 4 MIRTCVVTKEFEILYDVDLTLVNSPDVSWYWVDFHEPTDEESALLASFFRFHPLAIEDCL 63 Query: 61 HILQRPKLDYYEDVQFFVLHALNERTLEAEEIDLFLSKRFLVSYHHQEKQEMEEAWQMVK 120 +QRPKLD+Y+ F VLHA+ TLEAEE+DLF+ + F+VS+H ++E W+ +K Sbjct: 64 EYVQRPKLDFYDRYLFVVLHAIAGMTLEAEEVDLFVGQNFIVSFHKSPIHAVDEVWERLK 123 Query: 121 AEIPSRKGWSGGPMAAAYTVMDKLVDRYFPSLYSLEDELADLESQGGSESVEELMSQVFN 180 E + GP Y ++DKLVD YFP LY +ED L DLE +E + +++ +VF+ Sbjct: 124 HE----EDVQQGPFHVMYRLIDKLVDDYFPPLYHIEDVLNDLEENTNNEPIHDIIEKVFD 179 Query: 181 VRGRLLKLRRTIVPMRDLMYRILNSQHVQSNGEERIYFGDIYDHLLKLTDMIEVDREMTA 240 +RG L KLRRTIVPMRDL+YRI++S +Q E ++YF DIYDHLLKL++MIE +RE+TA Sbjct: 180 IRGDLSKLRRTIVPMRDLLYRIIHSDRLQRMKERQLYFHDIYDHLLKLSEMIETNREITA 239 Query: 241 DLRDSYISLNSNRMNSIMKTLTVITTIFMPLTLIAGIYGMNFRVMPELDWKYGYFXXXXX 300 D+RDSY+SLNSNRMN+IM T T ITTIFMPL+ IAGIYGMNF MPEL WKYGYF Sbjct: 240 DIRDSYLSLNSNRMNNIMMTFTAITTIFMPLSFIAGIYGMNFDYMPELHWKYGYFVVLAA 299 Query: 301 XXXXXXXXXRWFRRSGWFK 319 WF+R+GWF+ Sbjct: 300 MAVIGMTMFVWFKRNGWFQ 318 >Q5L158.1 Q5L158_GEOKA Divalent cation transport protein Length = 330 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 171/319 (53%), Positives = 221/319 (69%), Gaps = 4/319 (1%) Query: 1 MIRTLAVTHTGEVLTDLPLQDITIADYAWVWADFSTPTAEETLLLDTYFHFHPLAIEDCM 60 MIRT VT E+L D+ L + D +W W DF PT EE+ LL ++F FHPLAIEDC+ Sbjct: 1 MIRTCVVTKEFEILYDVDLTLVNSPDVSWYWVDFHEPTDEESALLASFFRFHPLAIEDCL 60 Query: 61 HILQRPKLDYYEDVQFFVLHALNERTLEAEEIDLFLSKRFLVSYHHQEKQEMEEAWQMVK 120 +QRPKLD+Y+ F VLHA+ TLEAEE+DLF+ + F+VS+H ++E W+ +K Sbjct: 61 EYVQRPKLDFYDRYLFVVLHAIAGMTLEAEEVDLFVGQNFIVSFHKSAIHAVDEVWERLK 120 Query: 121 AEIPSRKGWSGGPMAAAYTVMDKLVDRYFPSLYSLEDELADLESQGGSESVEELMSQVFN 180 E + GP Y ++DKLVD YFP LY +ED L DLE +E + +++ +VF+ Sbjct: 121 HE----EDVQQGPFHVMYRLIDKLVDDYFPPLYHIEDVLNDLEENTNNEPIHDIIEKVFD 176 Query: 181 VRGRLLKLRRTIVPMRDLMYRILNSQHVQSNGEERIYFGDIYDHLLKLTDMIEVDREMTA 240 +RG L KLRRTIVPMRDL+YRI++S +Q E ++YF DIYDHLLKL++MIE +RE+TA Sbjct: 177 IRGDLSKLRRTIVPMRDLLYRIIHSDRLQRMKERQLYFHDIYDHLLKLSEMIETNREITA 236 Query: 241 DLRDSYISLNSNRMNSIMKTLTVITTIFMPLTLIAGIYGMNFRVMPELDWKYGYFXXXXX 300 D+RDSY+SLNSNRMN+IM T T ITTIFMPL+ IAGIYGMNF MPEL WKYGYF Sbjct: 237 DIRDSYLSLNSNRMNNIMMTFTAITTIFMPLSFIAGIYGMNFDYMPELHWKYGYFVVLAA 296 Query: 301 XXXXXXXXXRWFRRSGWFK 319 WF+R+GWF+ Sbjct: 297 MAVIGMTMFVWFKRNGWFQ 315 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,807,215,054 Number of extensions: 71347565 Number of successful extensions: 184998 Number of sequences better than 1.0e-05: 1519 Number of HSP's gapped: 183584 Number of HSP's successfully gapped: 1519 Length of query: 319 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 184 Effective length of database: 1,788,859,178 Effective search space: 329150088752 Effective search space used: 329150088752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)