BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0315.0005.p
         (202 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KAC7.1 B3KAC7_9BACI Putative uncharacterized protein                 70   1e-10
B1D8Z8.1 B1D8Z8_9BACL Putative uncharacterized protein                 59   3e-07

>B3KAC7.1 B3KAC7_9BACI Putative uncharacterized protein
          Length = 196

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/42 (69%), Positives = 38/42 (90%)

Query: 104 NMEQIKGIVDRLGGIDGIVSSMGKVQKVMQGFQQMAPMVKLV 145
           NM  IKG++DR+GGIDGIV+++GKVQKVMQGFQQ+APM  ++
Sbjct: 102 NMSDIKGLIDRMGGIDGIVNNIGKVQKVMQGFQQLAPMFSVL 143


>B1D8Z8.1 B1D8Z8_9BACL Putative uncharacterized protein
          Length = 188

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 37/43 (86%)

Query: 104 NMEQIKGIVDRLGGIDGIVSSMGKVQKVMQGFQQMAPMVKLVM 146
           ++ +IKG VDR+GG+DGI++++GKVQKV+    QMAP+VK+++
Sbjct: 103 SLTEIKGFVDRIGGLDGILTTVGKVQKVVSSVSQMAPLVKVIL 145


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 451,110,784
Number of extensions: 8378741
Number of successful extensions: 22768
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 22768
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 73
Effective length of database: 1,845,385,268
Effective search space: 134713124564
Effective search space used: 134713124564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)