BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0315.0004.p
         (45 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D8Z9.1 B1D8Z9_9BACL TrpR like protein, YerC/YecD                     93   6e-18
B3KAC8.1 B3KAC8_9BACI TrpR like protein, YerC/YecD                     91   2e-17
C0Z4B9.1 C0Z4B9_BREBN Putative uncharacterized protein yecD            83   9e-15
Q9KF47.1 Q9KF47_BACHD BH0639 protein                                   77   4e-13
Q2BBV0.1 Q2BBV0_9BACI Putative uncharacterized protein                 72   1e-11

>B1D8Z9.1 B1D8Z9_9BACL TrpR like protein, YerC/YecD
          Length = 96

 Score = 93.2 bits (230), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/45 (97%), Positives = 45/45 (100%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERLGR 45
          MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYK+TLERLGR
Sbjct: 52 MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKMTLERLGR 96


>B3KAC8.1 B3KAC8_9BACI TrpR like protein, YerC/YecD
          Length = 96

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/45 (95%), Positives = 44/45 (97%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERLGR 45
          MLGKG TYNQIEAETGASTATISRVKRCLNYGNDGYK+TLERLGR
Sbjct: 52 MLGKGCTYNQIEAETGASTATISRVKRCLNYGNDGYKMTLERLGR 96


>C0Z4B9.1 C0Z4B9_BREBN Putative uncharacterized protein yecD
          Length = 96

 Score = 82.8 bits (203), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 38/45 (84%), Positives = 42/45 (93%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERLGR 45
          ML KG TYNQIEAETGASTATISRVKRCLNYGNDGY++ LER+G+
Sbjct: 52 MLRKGFTYNQIEAETGASTATISRVKRCLNYGNDGYQMALERIGK 96


>Q9KF47.1 Q9KF47_BACHD BH0639 protein
          Length = 100

 Score = 77.4 bits (189), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 41/43 (95%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERL 43
          ML +G+TY++IE ETGASTATISRVKRCLNYGNDGYK+TLER+
Sbjct: 52 MLREGATYHKIETETGASTATISRVKRCLNYGNDGYKMTLERI 94


>Q2BBV0.1 Q2BBV0_9BACI Putative uncharacterized protein
          Length = 104

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 38/43 (88%)

Query: 1  MLGKGSTYNQIEAETGASTATISRVKRCLNYGNDGYKLTLERL 43
          ML +G TY++IE ETGASTATISRVKRCLNYGND Y++ LER+
Sbjct: 52 MLREGKTYHKIETETGASTATISRVKRCLNYGNDAYEMALERI 94


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 248,548,637
Number of extensions: 5668197
Number of successful extensions: 11382
Number of sequences better than 1.0e-05: 157
Number of HSP's gapped: 11382
Number of HSP's successfully gapped: 157
Length of query: 45
Length of database: 3,060,696,203
Length adjustment: 19
Effective length of query: 26
Effective length of database: 2,881,696,918
Effective search space: 74924119868
Effective search space used: 74924119868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)