BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0313.0001.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3J3U4.1 C3J3U4_9BACI Activator of Hsp90 ATPase 1 family protein 233 1e-59 B7Y991.1 B7Y991_9BACI Activator of Hsp90 ATPase 1 family protein 233 1e-59 B1D4S9.1 B1D4S9_9BACL Activator of Hsp90 ATPase 1 family protein 171 1e-40 B3KKR8.1 B3KKR8_9BACI Activator of Hsp90 ATPase 1 family protein 165 5e-39 Q65GM0.1 Q65GM0_BACLD YndB 142 3e-32 >C3J3U4.1 C3J3U4_9BACI Activator of Hsp90 ATPase 1 family protein Length = 141 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/141 (74%), Positives = 122/141 (86%) Query: 103 MHTEETLPEIRKTIVLNAPIDKVWKAVATSGGLAAWWMDNTFEPVLGQEFILRSGQFGDS 162 M T++TLPEIRKTIVLNAPI+KVWKAVATS G+AAWWM NTFEP+LG +F+L +G FGDS Sbjct: 1 METKQTLPEIRKTIVLNAPIEKVWKAVATSEGIAAWWMPNTFEPILGHQFVLHAGPFGDS 60 Query: 163 PCKVTELEPPYRLGFDWGKDWHLAFELKELENQQTEFTLIHSGWDEAKVTEFGQPHSVIR 222 PCKVTEL+PP RLGFDWGKDWHL FELK LE+ +TEFTLIHSGWD K TEFGQPH+V+R Sbjct: 61 PCKVTELDPPNRLGFDWGKDWHLTFELKALEDGKTEFTLIHSGWDADKTTEFGQPHTVVR 120 Query: 223 GIMNGGWEKIVNQSLVSYIEA 243 IM+ GWE IVNQ L +Y++ Sbjct: 121 KIMDDGWENIVNQKLPAYLKG 141 >B7Y991.1 B7Y991_9BACI Activator of Hsp90 ATPase 1 family protein Length = 141 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/141 (74%), Positives = 122/141 (86%) Query: 103 MHTEETLPEIRKTIVLNAPIDKVWKAVATSGGLAAWWMDNTFEPVLGQEFILRSGQFGDS 162 M T++TLPEIRKTIVLNAPI+KVWKAVATS G+AAWWM NTFEP+LG +F+L +G FGDS Sbjct: 1 METKQTLPEIRKTIVLNAPIEKVWKAVATSEGIAAWWMPNTFEPILGHQFVLHAGPFGDS 60 Query: 163 PCKVTELEPPYRLGFDWGKDWHLAFELKELENQQTEFTLIHSGWDEAKVTEFGQPHSVIR 222 PCKVTEL+PP RLGFDWGKDWHL FELK LE+ +TEFTLIHSGWD K TEFGQPH+V+R Sbjct: 61 PCKVTELDPPNRLGFDWGKDWHLTFELKALEDGKTEFTLIHSGWDADKTTEFGQPHTVVR 120 Query: 223 GIMNGGWEKIVNQSLVSYIEA 243 IM+ GWE IVNQ L +Y++ Sbjct: 121 KIMDDGWENIVNQKLPAYLKG 141 >B1D4S9.1 B1D4S9_9BACL Activator of Hsp90 ATPase 1 family protein Length = 144 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/138 (59%), Positives = 102/138 (73%), Gaps = 3/138 (2%) Query: 108 TLPEIRKTIVLNAPIDKVWKAVATSGGLAAWWM--DNTFEPVLGQEFILRSGQFGDSPCK 165 TLP++R+T+ +NA I+KVW AV+T G++AW+M +F+P +G EF L +GQFG SPCK Sbjct: 7 TLPDVRQTVQVNASIEKVWNAVSTREGVSAWFMAPSESFKPEVGCEFHLETGQFGQSPCK 66 Query: 166 VTELEPPYRLGFDWGKDWHLAFELKELENQQTEFTLIHSGWDEAKVTEFGQPHSVIRGIM 225 VTE+EPP RL F+WGKDW L FELKELE +TEFTLIH GWD KVTEF QPH +R M Sbjct: 67 VTEVEPPNRLTFNWGKDWTLTFELKELEGGKTEFTLIHGGWDADKVTEFNQPHPQVREHM 126 Query: 226 NGGWEKIVNQSLVSYIEA 243 GGW IV + SY+E Sbjct: 127 AGGWAGIV-KKFASYVEG 143 >B3KKR8.1 B3KKR8_9BACI Activator of Hsp90 ATPase 1 family protein Length = 141 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 80/139 (57%), Positives = 100/139 (71%), Gaps = 2/139 (1%) Query: 105 TEETLPEIRKTIVLNAPIDKVWKAVATSGGLAAWWMDNTFEPVLGQEFILRSGQFGDSPC 164 T LP+IR T+VL API KVWKAVAT+ G+++W+M N FEPV G EF L +G FG+SPC Sbjct: 5 TNGKLPDIRHTLVLKAPIQKVWKAVATAEGISSWFMPNNFEPVEGFEFQLNAGPFGNSPC 64 Query: 165 KVTELEPPYRLGFDWGKDWHLAFELKELENQQTEFTLIHSGWDEAKVTEFGQPHSVIRGI 224 KVT ++ P RL F+WGKDW + FEL E + TEFTLIH GW +VTEFG+ H ++RG Sbjct: 65 KVTLIDEPNRLSFNWGKDWSVTFELVE-QGDHTEFTLIHGGWTADQVTEFGEAHDIVRGR 123 Query: 225 MNGGWEKIVNQSLVSYIEA 243 M+ GW IV Q L Y+EA Sbjct: 124 MDNGWAGIV-QKLAGYVEA 141 >Q65GM0.1 Q65GM0_BACLD YndB Length = 142 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 74/142 (52%), Positives = 96/142 (67%), Gaps = 4/142 (2%) Query: 105 TEETLPEIRKTIVLNAPIDKVWKAVATSGGLAAWWMDNTFEPVLGQEFILRSGQFGDSPC 164 + + +P+I K V +A I+KVW+AVATS G+AAW+M N F P +G EF L+S FG SPC Sbjct: 2 SNQLVPDIHKQAVFHASIEKVWEAVATSEGIAAWFMPNDFRPEIGCEFTLQS-PFGPSPC 60 Query: 165 KVTELEPPYRLGFDWGKD-WHLAFELKELENQQTEFTLIHSGWD--EAKVTEFGQPHSVI 221 KV EL+ P+RL F W W + FELKEL ++TEFTLIHSGW E V++ G+ + + Sbjct: 61 KVIELDAPHRLAFSWDTSGWIVTFELKELSAEKTEFTLIHSGWGAPEETVSKAGEKQADV 120 Query: 222 RGIMNGGWEKIVNQSLVSYIEA 243 R MNGGWE IVNQ L +E Sbjct: 121 RNRMNGGWETIVNQKLRQAVEG 142 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.143 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,722,147,616 Number of extensions: 67884933 Number of successful extensions: 173599 Number of sequences better than 1.0e-05: 410 Number of HSP's gapped: 173685 Number of HSP's successfully gapped: 410 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 131 (55.1 bits)