BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0024.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6P2.1 B1D6P2_9BACL Putative uncharacterized protein 261 8e-68 Q251A7.1 Q251A7_DESHY Putative uncharacterized protein 260 1e-67 B8G0S8.1 B8G0S8_DESHD Putative uncharacterized protein 259 2e-67 C0ZHU6.1 C0ZHU6_BREBN Putative rRNA methyltransferase 242 3e-62 B3K9B4.1 B3K9B4_9BACI Methyltransferase type 11 238 6e-61 >B1D6P2.1 B1D6P2_9BACL Putative uncharacterized protein Length = 299 Score = 261 bits (666), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 131/295 (44%), Positives = 189/295 (64%), Gaps = 5/295 (1%) Query: 1 MSTTTKKMILAGLMAANPRLFCCPLCASPMSLTEYKSLICSNHHCFDLARNGYINLLSRP 60 M +KK+I A + + +F CP+C PM + +SL+CSN HCFD+A+ GY+NLLSR Sbjct: 1 MFQKSKKLINAAVFEKHQDIFRCPMCKKPMKVIHLQSLVCSNQHCFDIAKQGYVNLLSRG 60 Query: 61 AGGKYGKELFASRKAIVNGGFFEPVDTYISGLIAGRKLAGNGPHRILDAGCGEGSHLAAI 120 KY K++F R+ I G F P+ +S +I + + P RILDAGCGEGSHL I Sbjct: 61 ISTKYDKKIFEYRRLISKDGLFNPLYGTVSRIIMNHH-SSHEPVRILDAGCGEGSHLNNI 119 Query: 121 Q-ELAAAGPHQSLLGVGLDISKEGIALAAKNNNASTLWCVGDLAHSPFGSGQFHTILNIL 179 Q E+ P LL +G+DISKEGI+ AA N ++++WCV D+A+ PF S +F ILNIL Sbjct: 120 QTEINRIKP-LDLLAIGIDISKEGISFAAAGN-SNSIWCVADIANCPFSSQKFKFILNIL 177 Query: 180 SPSNYAEFQRLLTADGRVIKVIPGQNYLQELRELLYGRSSRQQPNADSEIRERFSETFEI 239 SP+NY+EFQRLL+ G VIKV+P Q+YL+ELRE+LY S +Q ++S F++ F + Sbjct: 178 SPANYSEFQRLLSDHGLVIKVVPDQDYLKELREILY-LGSDKQTYSNSLTINHFNKQFNL 236 Query: 240 TEARHFQYKVSXXXXXXXXXVRMTPLSWAAAQNKLQTVLQLNELEISVDLSVLEG 294 + +Y+V+ + MTPLSW ++ +++ +LQLN +I++D VL G Sbjct: 237 IDVESVRYQVNLSEQLIEPLLGMTPLSWGTSEERIEKILQLNLKQITMDFKVLIG 291 >Q251A7.1 Q251A7_DESHY Putative uncharacterized protein Length = 302 Score = 260 bits (665), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 130/290 (44%), Positives = 186/290 (64%), Gaps = 7/290 (2%) Query: 12 GLMAANPRLFCCPLCASPMSLTEYKSLICSNHHCFDLARNGYINLLSRPAGGKYGKELFA 71 GL L CP+C + M+L KSLIC + HCFDLA+ GY+NLLS KY K+LF Sbjct: 10 GLADKYAGLLKCPICHNSMALINKKSLICRDKHCFDLAKQGYVNLLSHGIKTKYNKQLFE 69 Query: 72 SRKAIVNGGFFEPVD----TYISGLIAGRKLAGNGPH-RILDAGCGEGSHLAAIQELAAA 126 +RK + GFFEP++ T I L+ + GP I+DAGCGEGSHLA IQ+ Sbjct: 70 ARKLLAQSGFFEPLNQLLCTLIGNLMNNSEGKAQGPSLNIVDAGCGEGSHLATIQQKLLQ 129 Query: 127 GPHQSLLGVGLDISKEGIALAAKNNNASTLWCVGDLAHSPFGSGQFHTILNILSPSNYAE 186 LGVG+D++KEGI +AA++ S LWCV DLA PFG QF+ +LNILSP+NY+E Sbjct: 130 SRGIQPLGVGMDLAKEGIQMAARDY-GSILWCVADLAQCPFGDQQFNVLLNILSPANYSE 188 Query: 187 FQRLLTADGRVIKVIPGQNYLQELRELLYGRSSRQQPNADSEIRERFSETFEITEARHFQ 246 F R+LT DG +IKV+P ++YL+ELRE+LY +++Q ++++ RE F ++ + + Sbjct: 189 FARILTDDGLIIKVVPEKDYLKELREILYKETAKQD-YSNAKTRELFENHLQLCKLVPLR 247 Query: 247 YKVSXXXXXXXXXVRMTPLSWAAAQNKLQTVLQLNELEISVDLSVLEGRK 296 Y V+ V+MTPL+W A + ++ VL+L LEI++DL+++ G+K Sbjct: 248 YSVTLDQPLIGNLVQMTPLTWGAEETRIAKVLKLESLEITIDLTIMVGQK 297 >B8G0S8.1 B8G0S8_DESHD Putative uncharacterized protein Length = 302 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 129/290 (44%), Positives = 185/290 (63%), Gaps = 7/290 (2%) Query: 12 GLMAANPRLFCCPLCASPMSLTEYKSLICSNHHCFDLARNGYINLLSRPAGGKYGKELFA 71 GL L CP+C + M+L KSLIC + HCFDLA+ GY+NLLS KY K+LF Sbjct: 10 GLADKYAGLLKCPICHNSMALINKKSLICRDKHCFDLAKQGYVNLLSHGIKTKYNKQLFE 69 Query: 72 SRKAIVNGGFFEPVD----TYISGLIAGRKLAGNGPH-RILDAGCGEGSHLAAIQELAAA 126 +RK + GFFEP++ T I L+ + GP I+DAGCGEGSHLA IQ+ Sbjct: 70 ARKLLAQSGFFEPLNQLLCTLIGNLMNNSEGKAQGPFLNIVDAGCGEGSHLATIQQKLLQ 129 Query: 127 GPHQSLLGVGLDISKEGIALAAKNNNASTLWCVGDLAHSPFGSGQFHTILNILSPSNYAE 186 LGVG+D++KEGI +AA++ S WCV DLA PFG QF+ +LNILSP+NY+E Sbjct: 130 SKGIQPLGVGMDLAKEGIQMAARDY-GSIFWCVADLAQCPFGDQQFNVLLNILSPANYSE 188 Query: 187 FQRLLTADGRVIKVIPGQNYLQELRELLYGRSSRQQPNADSEIRERFSETFEITEARHFQ 246 F R+LT DG +IKV+P ++YL+ELRE+LY +++Q ++++ RE F ++ + + Sbjct: 189 FARILTDDGLIIKVVPEKDYLKELREILYEETAKQD-YSNAKTRELFENHLQLCKLVPLR 247 Query: 247 YKVSXXXXXXXXXVRMTPLSWAAAQNKLQTVLQLNELEISVDLSVLEGRK 296 Y V+ V+MTPL+W A + ++ VL+L LEI++DL+++ G+K Sbjct: 248 YSVTLDQPLIGNLVQMTPLTWGAEETRIAKVLKLESLEITIDLTIMVGQK 297 >C0ZHU6.1 C0ZHU6_BREBN Putative rRNA methyltransferase Length = 290 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 117/277 (42%), Positives = 173/277 (62%), Gaps = 2/277 (0%) Query: 20 LFCCPLCASPMSLTEYKSLICSNHHCFDLARNGYINLLSRPAGGKYGKELFASRKAIVNG 79 +F CP+C + M SL+C+NHHCFDL+++GY++L +R KY K+LFA+R+AI+ Sbjct: 16 IFRCPICQAAMRNVPATSLVCNNHHCFDLSKHGYVHLATRTYKTKYDKQLFAARRAIMEQ 75 Query: 80 GFFEPVDTYISGLIAGRKLAGNGPHRILDAGCGEGSHLAAIQELAAAGPHQSLLGVGLDI 139 GFF+P+ +S +I +LDAGCGEG HL +++ ++GVG+D+ Sbjct: 76 GFFDPLYDVLSEVILQTTEPEENRTYVLDAGCGEGYHLTQVRQRVMQASQVPIIGVGVDL 135 Query: 140 SKEGIALAAKNNNASTLWCVGDLAHSPFGSGQFHTILNILSPSNYAEFQRLLTADGRVIK 199 +KEG+ LAAKN+ + +WCVGDL ++PF QF ILN+LSPSN EF RLL +GR+IK Sbjct: 136 AKEGVMLAAKND-SEIVWCVGDLTNAPFVDRQFPYILNLLSPSNSDEFHRLLADEGRMIK 194 Query: 200 VIPGQNYLQELRELLYGRSSRQQPNADSEIRERFSETFEITEARHFQYKVSXXXXXXXXX 259 VIP NYL+ELRE+LY + + Q I + F +F++ QY+ Sbjct: 195 VIPEANYLRELREVLYQETPKTQYENHRTI-DHFKTSFQLIGKERVQYQFRLDEEGLASL 253 Query: 260 VRMTPLSWAAAQNKLQTVLQLNELEISVDLSVLEGRK 296 ++MTPL+W A +L+ V L +++++DL VL GRK Sbjct: 254 LQMTPLAWGATPEQLERVSNLAGMDMTIDLVVLIGRK 290 >B3K9B4.1 B3K9B4_9BACI Methyltransferase type 11 Length = 298 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 129/297 (43%), Positives = 177/297 (59%), Gaps = 6/297 (2%) Query: 1 MSTTTKKMILAGLMAANPRLFCCPLCASPMSLTEYKSLICSNHHCFDLARNGYINLLSRP 60 MS K + A ++ + ++F CP+C M + SL C N HC+D++R GY+NLL+ Sbjct: 1 MSNNEKWLKKAQKLSIHEKMFQCPICGGSMKVERMASLECENRHCYDISRQGYVNLLNHS 60 Query: 61 AGGKYGKELFASRKAIVNGGFFEP-VDTYISGLIAGRKLAGN-GPHRILDAGCGEGSHLA 118 + KY K LF +R I GFF P V+ + LI K + P ++LDAGCGEGSHL+ Sbjct: 61 SKTKYDKALFEARNTISGSGFFGPMVEAVTNRLIQELKSRESVKPVKLLDAGCGEGSHLS 120 Query: 119 AIQELAAAGP-HQSLLGVGLDISKEGIALAAKNNNASTLWCVGDLAHSPFGSGQFHTILN 177 AI P +LGVG+DI+KEGI +AAK + ++WCV DL+ SPF QF ILN Sbjct: 121 AIGHKLREHPLVPDVLGVGMDIAKEGIVMAAKTS-PDSIWCVADLSRSPFADQQFDYILN 179 Query: 178 ILSPSNYAEFQRLLTADGRVIKVIPGQNYLQELRELLYGRSSRQQPNADSEIRERFSETF 237 ILSPSNY+EF+RLL + G ++KVIP YLQELR L Y + ++ + DS I E FS F Sbjct: 180 ILSPSNYSEFRRLLASGGSLVKVIPDSLYLQELRTLFYTGTGKENYSNDSTI-ELFSRHF 238 Query: 238 EITEARHFQYKVSXXXXXXXXXVRMTPLSWAAAQNKLQTVLQLNELEISVDLSVLEG 294 E EA QY+V +RMTPLSW+A+ + +L +E++ D +L G Sbjct: 239 EQIEAERVQYRVVLDNDQMKQLIRMTPLSWSASPEAIGQMLD-EAMEVTADFKILYG 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,715,885,637 Number of extensions: 71080957 Number of successful extensions: 169820 Number of sequences better than 1.0e-05: 471 Number of HSP's gapped: 168251 Number of HSP's successfully gapped: 472 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)