BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0022.p (392 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2SME9.1 C2SME9_BACCE Transporter, MFS superfamily 381 e-104 C2ZRQ2.1 C2ZRQ2_BACCE Transporter, MFS superfamily 381 e-104 C2ZA79.1 C2ZA79_BACCE Transporter, MFS superfamily 381 e-104 C2XWM8.1 C2XWM8_BACCE Transporter, MFS superfamily 380 e-104 C3FVV6.1 C3FVV6_BACTB Transporter, MFS superfamily 380 e-103 >C2SME9.1 C2SME9_BACCE Transporter, MFS superfamily Length = 410 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/370 (53%), Positives = 244/370 (65%) Query: 11 LLFAAASGLSVANIYFAQPLLDAIAAEFGIRHSAVGIIITLTQICYAAGXXXXXXXXXXX 70 LLF+ A G++VANIYFA PLLD+++ EF I HS +G++IT+TQ+CYA G Sbjct: 32 LLFSIACGMAVANIYFAHPLLDSLSNEFKINHSTIGVVITITQVCYALGLLLLVPLGDLL 91 Query: 71 NRRRLITGQMLLSVLALLIVGTASSGTMXXXXXXXXXXXXXXXXXXXXXXXXXXSPAERG 130 N++RLI QMLLSV AL+++G A S T+ +P +RG Sbjct: 92 NQKRLIIVQMLLSVFALIVIGVAPSSTVLFIGMALVGILATVTQTLVAYASILANPKDRG 151 Query: 131 RVVGLVTSGIVIGILLARTFAGLLTDVAGWRAVYLASAGMTLLMAAALYKVLPSVETAKK 190 R+VG VTSG+VIGILLARTFAG LTD+AGWR+VYL SA + L + LY+ LP+ E K Sbjct: 152 RIVGFVTSGVVIGILLARTFAGTLTDLAGWRSVYLTSAVLMLFVIGLLYRNLPNPEHKKT 211 Query: 191 SLSYLNLIHSVFLLFAHEQILRVRAVLAFLIFTAFSILWTPLVLPLSAPPYSLSHTXXXX 250 +++Y L+HSV LLF E+ILR+R +LA LIFT+FSILWT LVLPLSA PY+LSHT Sbjct: 212 AMTYRKLLHSVLLLFVEERILRIRGILALLIFTSFSILWTSLVLPLSAAPYNLSHTAIGA 271 Query: 251 XXXXXXXXXXXXXXXXXXXDRGFGQHTTVIAXXXXXXXXXPISRAEHSLFILAIGIIVLD 310 DRGFG+ TT IA I HSLF+L IG+I+LD Sbjct: 272 FGLAGVAGALAATKAGQLADRGFGERTTGIALSLLLLSWLLIKLMNHSLFLLIIGVILLD 331 Query: 311 LAVQAVHVTNQSLIFKVRPEARSRLTAGYMIFYSLGSATGSIASTRVYGYAGWNGVCLLG 370 LAVQAVHVTNQS++F VRPEARSRLTA YMIFYS+GSATG+I ST +Y GWNGVC+LG Sbjct: 332 LAVQAVHVTNQSILFTVRPEARSRLTASYMIFYSIGSATGAILSTNIYASYGWNGVCILG 391 Query: 371 TLVSALALVF 380 VS AL+F Sbjct: 392 ASVSTCALLF 401 >C2ZRQ2.1 C2ZRQ2_BACCE Transporter, MFS superfamily Length = 415 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/370 (53%), Positives = 244/370 (65%) Query: 11 LLFAAASGLSVANIYFAQPLLDAIAAEFGIRHSAVGIIITLTQICYAAGXXXXXXXXXXX 70 LLF+ A G++VANIYFA PLLD+++ EF I HS +G++IT+TQ+CYA G Sbjct: 32 LLFSIACGMAVANIYFAHPLLDSLSNEFKINHSTIGVVITITQVCYALGLLLLVPLGDLL 91 Query: 71 NRRRLITGQMLLSVLALLIVGTASSGTMXXXXXXXXXXXXXXXXXXXXXXXXXXSPAERG 130 N++RLI QMLLSV AL+++G A S T+ +P +RG Sbjct: 92 NQKRLIIVQMLLSVFALIVIGFAPSSTVLFIGMALVGILATVTQTLVAYASILANPKDRG 151 Query: 131 RVVGLVTSGIVIGILLARTFAGLLTDVAGWRAVYLASAGMTLLMAAALYKVLPSVETAKK 190 R+VG VTSG+VIGILLARTFAG LTD+AGWR+VYL SA + L + LY+ LP+ E K Sbjct: 152 RIVGFVTSGVVIGILLARTFAGTLTDLAGWRSVYLTSAVLMLFVIGLLYRNLPNFEHKKT 211 Query: 191 SLSYLNLIHSVFLLFAHEQILRVRAVLAFLIFTAFSILWTPLVLPLSAPPYSLSHTXXXX 250 +++Y L+HSV LLF E+ LR+R +LA LIFT+FSILWT LVLPLSA PY+LSHT Sbjct: 212 AMTYRKLLHSVLLLFVEERHLRIRGILALLIFTSFSILWTSLVLPLSAAPYNLSHTAIGV 271 Query: 251 XXXXXXXXXXXXXXXXXXXDRGFGQHTTVIAXXXXXXXXXPISRAEHSLFILAIGIIVLD 310 DRGFG+ TT IA I HSLF+L IG+I+LD Sbjct: 272 FGLAGVAGALAATKAGQLADRGFGERTTGIALSLLLLSWLLIKLMNHSLFLLVIGVILLD 331 Query: 311 LAVQAVHVTNQSLIFKVRPEARSRLTAGYMIFYSLGSATGSIASTRVYGYAGWNGVCLLG 370 LAVQAVHVTNQS++F VRPEARSRLTA YMIFYS+GSATG+I ST +Y GWNGVC+LG Sbjct: 332 LAVQAVHVTNQSMLFTVRPEARSRLTASYMIFYSIGSATGAILSTNIYASYGWNGVCILG 391 Query: 371 TLVSALALVF 380 VSA AL+F Sbjct: 392 ASVSACALLF 401 >C2ZA79.1 C2ZA79_BACCE Transporter, MFS superfamily Length = 415 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/370 (53%), Positives = 244/370 (65%) Query: 11 LLFAAASGLSVANIYFAQPLLDAIAAEFGIRHSAVGIIITLTQICYAAGXXXXXXXXXXX 70 LLF+ A G++VANIYFA PLLD+++ EF I HS +G++IT+TQ+CYA G Sbjct: 32 LLFSIACGMAVANIYFAHPLLDSLSNEFKINHSTIGVVITITQVCYALGLLLLVPLGDLL 91 Query: 71 NRRRLITGQMLLSVLALLIVGTASSGTMXXXXXXXXXXXXXXXXXXXXXXXXXXSPAERG 130 N++RLI QMLLSV AL+++G A S T+ +P +RG Sbjct: 92 NQKRLIIVQMLLSVFALIVIGFAPSSTVLFIGMALVGILATVTQTLVAYASILANPKDRG 151 Query: 131 RVVGLVTSGIVIGILLARTFAGLLTDVAGWRAVYLASAGMTLLMAAALYKVLPSVETAKK 190 R+VG VTSG+VIGILLARTFAG LTD+AGWR+VYL SA + L + LY+ LP+ E K Sbjct: 152 RIVGFVTSGVVIGILLARTFAGTLTDLAGWRSVYLTSAVLMLFVIGLLYRNLPNFEHKKT 211 Query: 191 SLSYLNLIHSVFLLFAHEQILRVRAVLAFLIFTAFSILWTPLVLPLSAPPYSLSHTXXXX 250 +++Y L+HSV LLF E+ LR+R +LA LIFT+FSILWT LVLPLSA PY+LSHT Sbjct: 212 AMTYRKLLHSVLLLFVEERHLRIRGILALLIFTSFSILWTSLVLPLSAAPYNLSHTAIGV 271 Query: 251 XXXXXXXXXXXXXXXXXXXDRGFGQHTTVIAXXXXXXXXXPISRAEHSLFILAIGIIVLD 310 DRGFG+ TT IA I HSLF+L IG+I+LD Sbjct: 272 FGLAGVAGALAATKAGQLADRGFGERTTGIALSLLLLSWLLIKLMNHSLFLLVIGVILLD 331 Query: 311 LAVQAVHVTNQSLIFKVRPEARSRLTAGYMIFYSLGSATGSIASTRVYGYAGWNGVCLLG 370 LAVQAVHVTNQS++F VRPEARSRLTA YMIFYS+GSATG+I ST +Y GWNGVC+LG Sbjct: 332 LAVQAVHVTNQSMLFTVRPEARSRLTASYMIFYSIGSATGAILSTNIYASYGWNGVCILG 391 Query: 371 TLVSALALVF 380 VSA AL+F Sbjct: 392 ASVSACALLF 401 >C2XWM8.1 C2XWM8_BACCE Transporter, MFS superfamily Length = 419 Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust. Identities = 211/386 (54%), Positives = 248/386 (64%) Query: 3 PSISQKTALLFAAASGLSVANIYFAQPLLDAIAAEFGIRHSAVGIIITLTQICYAAGXXX 62 PS+S ALLFA A G+SVANIYFAQPLLD ++ EF I HS +GI+IT+TQI Y G Sbjct: 32 PSMSHALALLFATACGMSVANIYFAQPLLDQLSNEFSINHSIIGIVITVTQIFYGVGLLL 91 Query: 63 XXXXXXXXNRRRLITGQMLLSVLALLIVGTASSGTMXXXXXXXXXXXXXXXXXXXXXXXX 122 N+RRLI GQMLLS AL+IVGTASS + Sbjct: 92 LVPLGDLLNQRRLIVGQMLLSTTALVIVGTASSSMVLFAGMALVGLLAVVTQTLVAFAAT 151 Query: 123 XXSPAERGRVVGLVTSGIVIGILLARTFAGLLTDVAGWRAVYLASAGMTLLMAAALYKVL 182 SP ERGRVVG+VTSGIVIGILLARTFAG+LTDVAGWR+VYL SA + LLM K+L Sbjct: 152 IASPRERGRVVGIVTSGIVIGILLARTFAGILTDVAGWRSVYLFSAALMLLMVFMFIKML 211 Query: 183 PSVETAKKSLSYLNLIHSVFLLFAHEQILRVRAVLAFLIFTAFSILWTPLVLPLSAPPYS 242 P+VE KSLSY LI SV LF E+ LRVR+VLA LIF FSILWT LVLPLS PP + Sbjct: 212 PNVEREVKSLSYPQLIRSVLALFIQERTLRVRSVLAMLIFADFSILWTSLVLPLSTPPIA 271 Query: 243 LSHTXXXXXXXXXXXXXXXXXXXXXXXDRGFGQHTTVIAXXXXXXXXXPISRAEHSLFIL 302 LSH+ D+G+GQ TT IA IS E SL L Sbjct: 272 LSHSAIGAFGLVGVAGALAAARAGKLADQGYGQRTTGIALALLLISWLFISYIEQSLIAL 331 Query: 303 AIGIIVLDLAVQAVHVTNQSLIFKVRPEARSRLTAGYMIFYSLGSATGSIASTRVYGYAG 362 IGI++LDLAVQA+HVTNQ++I + EARSRLTAGYM+FYS+GSA GSIAST++Y + G Sbjct: 332 VIGIVLLDLAVQAIHVTNQTMILPLHTEARSRLTAGYMVFYSIGSAGGSIASTQIYAHFG 391 Query: 363 WNGVCLLGTLVSALALVFALCSSRIR 388 W GV LLG VSA AL+F + R++ Sbjct: 392 WGGVSLLGASVSAFALLFWAMTRRVK 417 >C3FVV6.1 C3FVV6_BACTB Transporter, MFS superfamily Length = 419 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/386 (54%), Positives = 248/386 (64%) Query: 3 PSISQKTALLFAAASGLSVANIYFAQPLLDAIAAEFGIRHSAVGIIITLTQICYAAGXXX 62 PS+S LLFA A G+SVANIYFAQPLLD I+ EFGI HS +G++IT+TQI Y G Sbjct: 32 PSMSHALVLLFATACGMSVANIYFAQPLLDQISNEFGINHSIIGVVITITQIFYGLGLLL 91 Query: 63 XXXXXXXXNRRRLITGQMLLSVLALLIVGTASSGTMXXXXXXXXXXXXXXXXXXXXXXXX 122 N+RRLI GQMLLS A++IVGTASS + Sbjct: 92 LVPLGDLLNQRRLIVGQMLLSTTAMVIVGTASSSMVLFAGMALVGLLAVVTQTLVAFAAT 151 Query: 123 XXSPAERGRVVGLVTSGIVIGILLARTFAGLLTDVAGWRAVYLASAGMTLLMAAALYKVL 182 SP ERGRVVG+VTSGIVIGILLARTFAG+LTDVAGWR+VYL SA + LLM K+ Sbjct: 152 IASPTERGRVVGIVTSGIVIGILLARTFAGILTDVAGWRSVYLFSAALMLLMVFMFIKMS 211 Query: 183 PSVETAKKSLSYLNLIHSVFLLFAHEQILRVRAVLAFLIFTAFSILWTPLVLPLSAPPYS 242 P+VE KSLSY LI SV LF E+ LRVR+VLA LIF FSILWT LVLPLS PP + Sbjct: 212 PNVEREVKSLSYPQLIRSVLALFIQERTLRVRSVLAMLIFADFSILWTSLVLPLSTPPIA 271 Query: 243 LSHTXXXXXXXXXXXXXXXXXXXXXXXDRGFGQHTTVIAXXXXXXXXXPISRAEHSLFIL 302 LSH+ D+G+GQ TT IA IS E SL L Sbjct: 272 LSHSAIGAFGLVGVAGALAAARAGKLADQGYGQRTTGIALALLLISWLFISYIEQSLIAL 331 Query: 303 AIGIIVLDLAVQAVHVTNQSLIFKVRPEARSRLTAGYMIFYSLGSATGSIASTRVYGYAG 362 IGI++LDLAVQA+HVTNQ++I + EARSRLTAGYM+FYS+GSA GSIAST++Y + G Sbjct: 332 VIGIVLLDLAVQAIHVTNQTMILPLHTEARSRLTAGYMVFYSIGSAGGSIASTQIYVHFG 391 Query: 363 WNGVCLLGTLVSALALVFALCSSRIR 388 W GV LLG VSALAL+F + R++ Sbjct: 392 WGGVSLLGASVSALALLFWAMTRRVK 417 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.138 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,636,675,430 Number of extensions: 52455578 Number of successful extensions: 241783 Number of sequences better than 1.0e-05: 889 Number of HSP's gapped: 240114 Number of HSP's successfully gapped: 1012 Length of query: 392 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 254 Effective length of database: 1,760,596,133 Effective search space: 447191417782 Effective search space used: 447191417782 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)