BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0311.0019.p
         (172 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A8MIE9.1 A8MIE9_ALKOO NUDIX hydrolase                                  59   1e-07

>A8MIE9.1 A8MIE9_ALKOO NUDIX hydrolase
          Length = 159

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 3   LRQMAVAFIFNEHREVLFLQKKPTSAFLPGMLVPIGGHMESGEISDPKRACLREIQXXXX 62
           LR M   +I  E++ +L L +  +    P     IGGH E  E+++PK   LRE+     
Sbjct: 2   LRNMTAIYITFENK-MLLLYRIGSKVVQPSW-CGIGGHFEKEELNNPKACVLRELFEETG 59

Query: 63  XXXXXXXXXXXRYIVHRMKDEREIRIQYIFTGEA-AAGSKLVESKEGRLLWVDCSTVSSR 121
                      +Y   R+K+  EIR  Y +  +   A   + +  EG+L WVD   +  +
Sbjct: 60  IKENDLENIEFKYAALRLKN-GEIRQNYYYFAKLRNAEIDIHQCNEGKLQWVDMDHILEK 118

Query: 122 HVSASTEEAMRHFLETGIHNHKTYIG 147
            +  + +E ++H+L  G ++ K Y G
Sbjct: 119 KMPFTAKECLKHYLSAGRYDDKPYAG 144


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 873,872,374
Number of extensions: 26754646
Number of successful extensions: 56887
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 56887
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 46
Effective length of database: 1,873,648,313
Effective search space: 86187822398
Effective search space used: 86187822398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)