BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0016.p (258 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q183B5.1 Q183B5_CLOD6 D-beta-hydroxybutyrate dehydrogenase EC=1.... 452 e-125 A2RD61.1 A2RD61_STRPG Putative D-beta-hydroxybutyrate dehydrogen... 429 e-118 Q48S12.1 Q48S12_STRPM D-beta-hydroxybutyrate dehydrogenase EC=1.... 427 e-118 Q99YL9.1 Q99YL9_STRP1 Putative oxidoreductase EC=1.1.1.30 425 e-117 Q1JFN0.1 Q1JFN0_STRPD D-beta-hydroxybutyrate dehydrogenase EC=1.... 425 e-117 >Q183B5.1 Q183B5_CLOD6 D-beta-hydroxybutyrate dehydrogenase EC=1.1.1.30 Length = 258 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 214/258 (82%), Positives = 238/258 (92%) Query: 1 MEETKVVFVTGAASGIGKQIGETFLKQGSKVVFSDINDEILQEMVNVLKNEGFDCHGIKC 60 M + KVVFVTGAASGIGKQI E+FLK G+KV+FSDIN E L + L+ +G+DC +KC Sbjct: 1 MVKDKVVFVTGAASGIGKQIAESFLKNGAKVMFSDINQEALNNTITELQKKGYDCMSVKC 60 Query: 61 DVTKEDEINSAIDETVEKYGRLDVLINNAGLQHVSLIEDFPTHKFEFMLKVMLVAPFIAT 120 DVTKE+EIN AID+TVEKYGRLD+LINNAGLQHVS+IEDFPT KFEFM+K+ML APFIAT Sbjct: 61 DVTKEEEINHAIDKTVEKYGRLDILINNAGLQHVSMIEDFPTDKFEFMIKIMLTAPFIAT 120 Query: 121 KRAFPIMKKQGFGRIINMASINGVIGFAGKSAYNSAKHGVIGLTKVTALEAANSGITVNA 180 K+AFPIMKKQGFGRIINMASINGVIGFAGK+AYNSAKHG+IGLTKV ALEAA+SGITVNA Sbjct: 121 KKAFPIMKKQGFGRIINMASINGVIGFAGKAAYNSAKHGLIGLTKVAALEAADSGITVNA 180 Query: 181 ICPGYVDTPLVRGQFEDLSKTRNIPLENVLEEVLYPLVPQKRLIDVQEIADYAVFLASEQ 240 +CPGYVDTPLVRGQF DLSKTRNIPLENVLEEVLYPLVPQKRL+DVQEIADYA+FLAS+ Sbjct: 181 LCPGYVDTPLVRGQFNDLSKTRNIPLENVLEEVLYPLVPQKRLLDVQEIADYAMFLASDN 240 Query: 241 AKGITGQACLIDGGYTAQ 258 AKGITGQACL+DGGYTAQ Sbjct: 241 AKGITGQACLLDGGYTAQ 258 >A2RD61.1 A2RD61_STRPG Putative D-beta-hydroxybutyrate dehydrogenase EC=1.1.1.30 Length = 259 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 207/259 (79%), Positives = 228/259 (88%), Gaps = 1/259 (0%) Query: 1 MEETK-VVFVTGAASGIGKQIGETFLKQGSKVVFSDINDEILQEMVNVLKNEGFDCHGIK 59 M TK V F+TGAASGIGKQIGETFLK+G VVFSDIN E L E+V EG+D + Sbjct: 1 MTHTKEVAFITGAASGIGKQIGETFLKEGKTVVFSDINKEKLDEVVADYTKEGYDAFSVV 60 Query: 60 CDVTKEDEINSAIDETVEKYGRLDVLINNAGLQHVSLIEDFPTHKFEFMLKVMLVAPFIA 119 CDVTKE+ IN+AID VEKYGR+D+L+NNAGLQHV++IEDFPT KFEFM+K+ML APFIA Sbjct: 61 CDVTKEEAINAAIDTVVEKYGRIDILVNNAGLQHVAMIEDFPTEKFEFMIKIMLTAPFIA 120 Query: 120 TKRAFPIMKKQGFGRIINMASINGVIGFAGKSAYNSAKHGVIGLTKVTALEAANSGITVN 179 KRAFP MK Q GRIINMASINGVIGFAGKSAYNSAKHG+IGLTKVTALEAA+SGITVN Sbjct: 121 IKRAFPTMKAQKHGRIINMASINGVIGFAGKSAYNSAKHGLIGLTKVTALEAADSGITVN 180 Query: 180 AICPGYVDTPLVRGQFEDLSKTRNIPLENVLEEVLYPLVPQKRLIDVQEIADYAVFLASE 239 AICPGYVDTPLVRGQFEDLSKTR IPLENVLEEVLYPLVPQKRLIDVQEIADY FLAS+ Sbjct: 181 AICPGYVDTPLVRGQFEDLSKTRGIPLENVLEEVLYPLVPQKRLIDVQEIADYVSFLASD 240 Query: 240 QAKGITGQACLIDGGYTAQ 258 +AKG+TGQAC++DGGYTAQ Sbjct: 241 KAKGVTGQACILDGGYTAQ 259 >Q48S12.1 Q48S12_STRPM D-beta-hydroxybutyrate dehydrogenase EC=1.1.1.30 Length = 259 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 206/259 (79%), Positives = 228/259 (88%), Gaps = 1/259 (0%) Query: 1 MEETK-VVFVTGAASGIGKQIGETFLKQGSKVVFSDINDEILQEMVNVLKNEGFDCHGIK 59 M TK V F+TGAASGIGKQIGETFLK+G VVFSDIN E L ++V EG+D + Sbjct: 1 MTHTKEVAFITGAASGIGKQIGETFLKEGKTVVFSDINQEKLDQVVADYTKEGYDAFSVV 60 Query: 60 CDVTKEDEINSAIDETVEKYGRLDVLINNAGLQHVSLIEDFPTHKFEFMLKVMLVAPFIA 119 CDVTKE+ IN+AID VEKYGR+D+L+NNAGLQHV++IEDFPT KFEFM+K+ML APFIA Sbjct: 61 CDVTKEEAINAAIDTVVEKYGRIDILVNNAGLQHVAMIEDFPTEKFEFMIKIMLTAPFIA 120 Query: 120 TKRAFPIMKKQGFGRIINMASINGVIGFAGKSAYNSAKHGVIGLTKVTALEAANSGITVN 179 KRAFP MK Q GRIINMASINGVIGFAGKSAYNSAKHG+IGLTKVTALEAA+SGITVN Sbjct: 121 IKRAFPTMKAQKHGRIINMASINGVIGFAGKSAYNSAKHGLIGLTKVTALEAADSGITVN 180 Query: 180 AICPGYVDTPLVRGQFEDLSKTRNIPLENVLEEVLYPLVPQKRLIDVQEIADYAVFLASE 239 AICPGYVDTPLVRGQFEDLSKTR IPLENVLEEVLYPLVPQKRLIDVQEIADY FLAS+ Sbjct: 181 AICPGYVDTPLVRGQFEDLSKTRGIPLENVLEEVLYPLVPQKRLIDVQEIADYVSFLASD 240 Query: 240 QAKGITGQACLIDGGYTAQ 258 +AKG+TGQAC++DGGYTAQ Sbjct: 241 KAKGVTGQACILDGGYTAQ 259 >Q99YL9.1 Q99YL9_STRP1 Putative oxidoreductase EC=1.1.1.30 Length = 259 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/259 (79%), Positives = 227/259 (87%), Gaps = 1/259 (0%) Query: 1 MEETK-VVFVTGAASGIGKQIGETFLKQGSKVVFSDINDEILQEMVNVLKNEGFDCHGIK 59 M TK V F+TGAASGIGKQIGET LK+G VVFSDIN E L ++V EG+D + Sbjct: 1 MTHTKEVAFITGAASGIGKQIGETLLKEGKTVVFSDINQEKLDQVVADYTKEGYDAFSVV 60 Query: 60 CDVTKEDEINSAIDETVEKYGRLDVLINNAGLQHVSLIEDFPTHKFEFMLKVMLVAPFIA 119 CDVTKE+ IN+AID VEKYGR+D+L+NNAGLQHV++IEDFPT KFEFM+K+ML APFIA Sbjct: 61 CDVTKEEAINAAIDTVVEKYGRIDILVNNAGLQHVAMIEDFPTEKFEFMIKIMLTAPFIA 120 Query: 120 TKRAFPIMKKQGFGRIINMASINGVIGFAGKSAYNSAKHGVIGLTKVTALEAANSGITVN 179 KRAFP MK Q GRIINMASINGVIGFAGKSAYNSAKHG+IGLTKVTALEAA+SGITVN Sbjct: 121 IKRAFPTMKAQKHGRIINMASINGVIGFAGKSAYNSAKHGLIGLTKVTALEAADSGITVN 180 Query: 180 AICPGYVDTPLVRGQFEDLSKTRNIPLENVLEEVLYPLVPQKRLIDVQEIADYAVFLASE 239 AICPGYVDTPLVRGQFEDLSKTR IPLENVLEEVLYPLVPQKRLIDVQEIADY FLAS+ Sbjct: 181 AICPGYVDTPLVRGQFEDLSKTRGIPLENVLEEVLYPLVPQKRLIDVQEIADYVSFLASD 240 Query: 240 QAKGITGQACLIDGGYTAQ 258 +AKG+TGQAC++DGGYTAQ Sbjct: 241 KAKGVTGQACILDGGYTAQ 259 >Q1JFN0.1 Q1JFN0_STRPD D-beta-hydroxybutyrate dehydrogenase EC=1.1.1.30 Length = 259 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/259 (79%), Positives = 227/259 (87%), Gaps = 1/259 (0%) Query: 1 MEETK-VVFVTGAASGIGKQIGETFLKQGSKVVFSDINDEILQEMVNVLKNEGFDCHGIK 59 M TK V F+TGAASGIGKQIGET LK+G VVFSDIN E L ++V EG+D + Sbjct: 1 MTHTKEVAFITGAASGIGKQIGETLLKEGKTVVFSDINQEKLDQVVADYTKEGYDAFSVV 60 Query: 60 CDVTKEDEINSAIDETVEKYGRLDVLINNAGLQHVSLIEDFPTHKFEFMLKVMLVAPFIA 119 CDVTKE+ IN+AID VEKYGR+D+L+NNAGLQHV++IEDFPT KFEFM+K+ML APFIA Sbjct: 61 CDVTKEEAINAAIDTVVEKYGRIDILVNNAGLQHVAMIEDFPTEKFEFMIKIMLTAPFIA 120 Query: 120 TKRAFPIMKKQGFGRIINMASINGVIGFAGKSAYNSAKHGVIGLTKVTALEAANSGITVN 179 KRAFP MK Q GRIINMASINGVIGFAGKSAYNSAKHG+IGLTKVTALEAA+SGITVN Sbjct: 121 IKRAFPTMKAQKHGRIINMASINGVIGFAGKSAYNSAKHGLIGLTKVTALEAADSGITVN 180 Query: 180 AICPGYVDTPLVRGQFEDLSKTRNIPLENVLEEVLYPLVPQKRLIDVQEIADYAVFLASE 239 AICPGYVDTPLVRGQFEDLSKTR IPLENVLEEVLYPLVPQKRLIDVQEIADY FLAS+ Sbjct: 181 AICPGYVDTPLVRGQFEDLSKTRGIPLENVLEEVLYPLVPQKRLIDVQEIADYVSFLASD 240 Query: 240 QAKGITGQACLIDGGYTAQ 258 +AKG+TGQAC++DGGYTAQ Sbjct: 241 KAKGVTGQACILDGGYTAQ 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,439,775,639 Number of extensions: 57503007 Number of successful extensions: 273011 Number of sequences better than 1.0e-05: 31467 Number of HSP's gapped: 219051 Number of HSP's successfully gapped: 31556 Length of query: 258 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 125 Effective length of database: 1,807,701,208 Effective search space: 225962651000 Effective search space used: 225962651000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)