BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0015.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q183B1.1 Q183B1_CLOD6 Butyrate--acetoacetate CoA-transferase sub... 323 6e-87 Q1JIY5.1 Q1JIY5_STRPD Acetate CoA-transferase beta subunit EC=2.... 295 2e-78 Q9A1R2.1 Q9A1R2_STRP1 Butyrate-acetoacetate CoA-transferase, bet... 293 8e-78 Q7CNN1.1 Q7CNN1_STRP8 Butyrate-acetoacetate CoA-transferase, bet... 293 8e-78 Q48VM3.1 Q48VM3_STRPM Acetyl-CoA:acetoacetyl-CoA transferase bet... 293 8e-78 >Q183B1.1 Q183B1_CLOD6 Butyrate--acetoacetate CoA-transferase subunit B EC=2.8.3.9 Length = 221 Score = 323 bits (828), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 157/215 (73%), Positives = 184/215 (85%) Query: 3 MDKAELQNMIAKRVAQELKDGELVNLGIGLPTKVANFVSEEVHVTFHSENGFVGLGPAQG 62 MDK E+Q IA RV++ELKDG +VNLGIGLPTKVAN++ + V+V SENGF+GLG A+ Sbjct: 1 MDKLEMQEYIANRVSKELKDGAVVNLGIGLPTKVANYIPDNVNVILQSENGFLGLGSAED 60 Query: 63 EEITDPTIVNAGGQYVTINPNGCFFDSATSFGIIRGGHVDLTVLGALQVDEKGNIANYMI 122 +D TIVNAGGQ VTI P GCFFDSATSFGIIRGGHVD+TVLGALQVD+ GNIANYMI Sbjct: 61 GNSSDETIVNAGGQPVTILPGGCFFDSATSFGIIRGGHVDITVLGALQVDKYGNIANYMI 120 Query: 123 PGKMVPGMGGAMDLLTGAKKVIVAMEHTSQGKAKILKECTLPLTAKNAVDLIITEMAVIE 182 PGKMVPGMGGAMDL+TGAKKVIVAMEHTS+G AKIL CTLPLTA NAVDLI+TEM V+E Sbjct: 121 PGKMVPGMGGAMDLVTGAKKVIVAMEHTSKGSAKILNNCTLPLTATNAVDLIVTEMGVME 180 Query: 183 VTPEGFLLQEINSAYTLEEVLAATEAKLLISEKLK 217 VT +G LL+EIN A+TL++V++ATEA L++S+ L Sbjct: 181 VTSDGILLKEINPAFTLDDVISATEAPLILSDSLN 215 >Q1JIY5.1 Q1JIY5_STRPD Acetate CoA-transferase beta subunit EC=2.8.3.8 Length = 215 Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 149/214 (69%), Positives = 174/214 (81%), Gaps = 2/214 (0%) Query: 1 VKMDKAELQNMIAKRVAQELKDGELVNLGIGLPTKVANFVSEEVHVTFHSENGFVGLGPA 60 V + K E+QN IAKRVA+EL+DG LVNLGIGLPTKVANFV EE+ V F SENGF+GLGP Sbjct: 3 VALSKEEIQNRIAKRVAKELEDGTLVNLGIGLPTKVANFVPEEMTVYFQSENGFIGLGPK 62 Query: 61 QGEEITDPTIVNAGGQYVTINPNGCFFDSATSFGIIRGGHVDLTVLGALQVDEKGNIANY 120 + + TIVNAGGQ+VT+ P FF+SA SFGIIRGGHVDLTVLGAL++ E G+IANY Sbjct: 63 SDD--PNSTIVNAGGQHVTVYPGAAFFNSADSFGIIRGGHVDLTVLGALEIAENGDIANY 120 Query: 121 MIPGKMVPGMGGAMDLLTGAKKVIVAMEHTSQGKAKILKECTLPLTAKNAVDLIITEMAV 180 +IPGKMVPGMGGAMDLL GAKKVIVAMEHT++GK K+LKECTLPLTAK VDLIITEM V Sbjct: 121 LIPGKMVPGMGGAMDLLVGAKKVIVAMEHTNKGKHKLLKECTLPLTAKGVVDLIITEMGV 180 Query: 181 IEVTPEGFLLQEINSAYTLEEVLAATEAKLLISE 214 +VTP+G + EI+ +T +EV AAT L I+E Sbjct: 181 FKVTPDGIQVIEISEGFTFDEVQAATGVPLSIAE 214 >Q9A1R2.1 Q9A1R2_STRP1 Butyrate-acetoacetate CoA-transferase, beta subunit EC=2.8.3.- EC=2.8.3.9 Length = 215 Score = 293 bits (750), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 149/214 (69%), Positives = 173/214 (80%), Gaps = 2/214 (0%) Query: 1 VKMDKAELQNMIAKRVAQELKDGELVNLGIGLPTKVANFVSEEVHVTFHSENGFVGLGPA 60 V + K E+QN IAKRVA+EL+DG LVNLGIGLPTKVANFV EE+ V F SENGF+GLGP Sbjct: 3 VALSKEEIQNRIAKRVAKELEDGTLVNLGIGLPTKVANFVPEEMTVYFQSENGFIGLGPK 62 Query: 61 QGEEITDPTIVNAGGQYVTINPNGCFFDSATSFGIIRGGHVDLTVLGALQVDEKGNIANY 120 + + TIVNAGGQ VT+ P FF+SA SFGIIRGGHVDLTVLGAL++ E G+IANY Sbjct: 63 SDD--PNSTIVNAGGQPVTVYPGAAFFNSADSFGIIRGGHVDLTVLGALEIAENGDIANY 120 Query: 121 MIPGKMVPGMGGAMDLLTGAKKVIVAMEHTSQGKAKILKECTLPLTAKNAVDLIITEMAV 180 +IPGKMVPGMGGAMDLL GAKKVIVAMEHT++GK K+LKECTLPLTAK VDLIITEM V Sbjct: 121 LIPGKMVPGMGGAMDLLVGAKKVIVAMEHTNKGKHKLLKECTLPLTAKGVVDLIITEMGV 180 Query: 181 IEVTPEGFLLQEINSAYTLEEVLAATEAKLLISE 214 +VTP+G + EI+ +T +EV AAT L I+E Sbjct: 181 FKVTPDGIQVIEISEGFTFDEVQAATGVPLSIAE 214 >Q7CNN1.1 Q7CNN1_STRP8 Butyrate-acetoacetate CoA-transferase, beta subunit Length = 215 Score = 293 bits (750), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 149/214 (69%), Positives = 173/214 (80%), Gaps = 2/214 (0%) Query: 1 VKMDKAELQNMIAKRVAQELKDGELVNLGIGLPTKVANFVSEEVHVTFHSENGFVGLGPA 60 V + K E+QN IAKRVA+EL+DG LVNLGIGLPTKVANFV EE+ V F SENGF+GLGP Sbjct: 3 VALSKEEIQNRIAKRVAKELEDGTLVNLGIGLPTKVANFVPEEMTVYFQSENGFIGLGPK 62 Query: 61 QGEEITDPTIVNAGGQYVTINPNGCFFDSATSFGIIRGGHVDLTVLGALQVDEKGNIANY 120 + + TIVNAGGQ VT+ P FF+SA SFGIIRGGHVDLTVLGAL++ E G+IANY Sbjct: 63 SDD--PNSTIVNAGGQPVTVYPGAAFFNSADSFGIIRGGHVDLTVLGALEIAENGDIANY 120 Query: 121 MIPGKMVPGMGGAMDLLTGAKKVIVAMEHTSQGKAKILKECTLPLTAKNAVDLIITEMAV 180 +IPGKMVPGMGGAMDLL GAKKVIVAMEHT++GK K+LKECTLPLTAK VDLIITEM V Sbjct: 121 LIPGKMVPGMGGAMDLLVGAKKVIVAMEHTNKGKHKLLKECTLPLTAKGVVDLIITEMGV 180 Query: 181 IEVTPEGFLLQEINSAYTLEEVLAATEAKLLISE 214 +VTP+G + EI+ +T +EV AAT L I+E Sbjct: 181 FKVTPDGIQVIEISEGFTFDEVQAATGVPLSIAE 214 >Q48VM3.1 Q48VM3_STRPM Acetyl-CoA:acetoacetyl-CoA transferase beta subunit EC=2.8.3.- Length = 215 Score = 293 bits (750), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 149/214 (69%), Positives = 173/214 (80%), Gaps = 2/214 (0%) Query: 1 VKMDKAELQNMIAKRVAQELKDGELVNLGIGLPTKVANFVSEEVHVTFHSENGFVGLGPA 60 V + K E+QN IAKRVA+EL+DG LVNLGIGLPTKVANFV EE+ V F SENGF+GLGP Sbjct: 3 VALSKEEIQNRIAKRVAKELEDGTLVNLGIGLPTKVANFVPEEMTVYFQSENGFIGLGPK 62 Query: 61 QGEEITDPTIVNAGGQYVTINPNGCFFDSATSFGIIRGGHVDLTVLGALQVDEKGNIANY 120 + + TIVNAGGQ VT+ P FF+SA SFGIIRGGHVDLTVLGAL++ E G+IANY Sbjct: 63 SDD--PNSTIVNAGGQPVTVYPGAAFFNSADSFGIIRGGHVDLTVLGALEIAENGDIANY 120 Query: 121 MIPGKMVPGMGGAMDLLTGAKKVIVAMEHTSQGKAKILKECTLPLTAKNAVDLIITEMAV 180 +IPGKMVPGMGGAMDLL GAKKVIVAMEHT++GK K+LKECTLPLTAK VDLIITEM V Sbjct: 121 LIPGKMVPGMGGAMDLLVGAKKVIVAMEHTNKGKHKLLKECTLPLTAKGVVDLIITEMGV 180 Query: 181 IEVTPEGFLLQEINSAYTLEEVLAATEAKLLISE 214 +VTP+G + EI+ +T +EV AAT L I+E Sbjct: 181 FKVTPDGIQVIEISEGFTFDEVQAATGVPLSIAE 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,269,850,847 Number of extensions: 53132810 Number of successful extensions: 95095 Number of sequences better than 1.0e-05: 1220 Number of HSP's gapped: 93641 Number of HSP's successfully gapped: 1220 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 128 (53.9 bits)