BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0014.p (217 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q183B2.1 Q183B2_CLOD6 Butyrate--acetoacetate CoA-transferase sub... 320 6e-86 Q99YM1.1 Q99YM1_STRP1 Putative Acetyl-CoA:acetoacetyl-CoA transf... 261 3e-68 Q1JFN2.1 Q1JFN2_STRPD Acetate CoA-transferase alpha subunit EC=2... 261 3e-68 Q1JKP2.1 Q1JKP2_STRPC Acetate CoA-transferase alpha subunit EC=2... 261 4e-68 Q1JAJ0.1 Q1JAJ0_STRPB Acetate CoA-transferase alpha subunit EC=2... 261 4e-68 >Q183B2.1 Q183B2_CLOD6 Butyrate--acetoacetate CoA-transferase subunit A EC=2.8.3.9 Length = 218 Score = 320 bits (820), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 154/216 (71%), Positives = 178/216 (82%) Query: 1 MNKVVALDEAIAHIKDGDVVMIGGFMANGTPEKLVDALVEANIKDITLICNDTGFINRGS 60 MNK+V++DEA++H+KDGD +M+GGFMANG+PE L+D L NIKD+TLICNDTGFI++G Sbjct: 1 MNKIVSIDEALSHVKDGDTIMVGGFMANGSPENLIDYLCSKNIKDLTLICNDTGFIDKGV 60 Query: 61 GKLVSNKQCKKIMASHIGTNKETGRQMTEGETEVVLIPQGTLVEQIRAGGYGLGGVLTAT 120 GK+V NKQ KKI+ASH+G NKETGRQM ET+V L+PQGTL EQIRA GYGLGG+LT T Sbjct: 61 GKMVVNKQFKKIIASHVGLNKETGRQMNNNETDVELVPQGTLAEQIRAAGYGLGGILTPT 120 Query: 121 GIGTLVEEGKEKIVVDGKEYLLEKPITADVALLYAAKADKAGNMVYKGSANNFNNIMAGA 180 GIGTLVEEGK+KIVVD KEYLLEKPI ADVALL+A+K DKAGN+VYKGS NNFNN+MA A Sbjct: 121 GIGTLVEEGKQKIVVDSKEYLLEKPIYADVALLFASKVDKAGNLVYKGSMNNFNNLMASA 180 Query: 181 AKTTXXXXXXXXXXXXXDPNEVVTPNIFVNYIVEGG 216 AK T DPNEV TP IFVNYIVEGG Sbjct: 181 AKITIVESDEIVEIGDIDPNEVNTPGIFVNYIVEGG 216 >Q99YM1.1 Q99YM1_STRP1 Putative Acetyl-CoA:acetoacetyl-CoA transferase A subunit EC=2.8.3.8 EC=2.8.3.- Length = 216 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/215 (62%), Positives = 166/215 (77%) Query: 1 MNKVVALDEAIAHIKDGDVVMIGGFMANGTPEKLVDALVEANIKDITLICNDTGFINRGS 60 M K + + EA+AH+KDGD +M+GGFM NGTPEKL+DALVE +KD+TLICND GF ++G Sbjct: 1 MCKEITIKEAVAHVKDGDTIMVGGFMTNGTPEKLIDALVEKGVKDLTLICNDAGFPDKGV 60 Query: 61 GKLVSNKQCKKIMASHIGTNKETGRQMTEGETEVVLIPQGTLVEQIRAGGYGLGGVLTAT 120 GK+V+NKQ I+ASHIG N+E GRQMTEGET + L+PQGTL E+IR+GG+GLGG LT T Sbjct: 61 GKMVANKQFSTIIASHIGLNREAGRQMTEGETVIDLVPQGTLAERIRSGGFGLGGFLTPT 120 Query: 121 GIGTLVEEGKEKIVVDGKEYLLEKPITADVALLYAAKADKAGNMVYKGSANNFNNIMAGA 180 GIGT V +GKE I +DGK+YLLEKP+ ADVAL++A KADK GN+ Y GS NNFN++MA Sbjct: 121 GIGTEVAKGKEVITIDGKDYLLEKPLKADVALIFANKADKNGNLQYAGSENNFNHVMAAN 180 Query: 181 AKTTXXXXXXXXXXXXXDPNEVVTPNIFVNYIVEG 215 AKTT DPN V TP IFVNY+V+G Sbjct: 181 AKTTIVEAREIVDVGQMDPNFVHTPGIFVNYLVKG 215 >Q1JFN2.1 Q1JFN2_STRPD Acetate CoA-transferase alpha subunit EC=2.8.3.8 Length = 220 Score = 261 bits (667), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 135/215 (62%), Positives = 166/215 (77%) Query: 1 MNKVVALDEAIAHIKDGDVVMIGGFMANGTPEKLVDALVEANIKDITLICNDTGFINRGS 60 M K + + EA+AH+KDGD +M+GGFM NGTPEKL+DALVE +KD+TLICND GF ++G Sbjct: 5 MCKEITIKEAVAHVKDGDTIMVGGFMTNGTPEKLIDALVEKGVKDLTLICNDAGFPDKGV 64 Query: 61 GKLVSNKQCKKIMASHIGTNKETGRQMTEGETEVVLIPQGTLVEQIRAGGYGLGGVLTAT 120 GK+V+NKQ I+ASHIG N+E GRQMTEGET + L+PQGTL E+IR+GG+GLGG LT T Sbjct: 65 GKMVANKQFSTIIASHIGLNREAGRQMTEGETVIDLVPQGTLAERIRSGGFGLGGFLTPT 124 Query: 121 GIGTLVEEGKEKIVVDGKEYLLEKPITADVALLYAAKADKAGNMVYKGSANNFNNIMAGA 180 GIGT V +GKE I +DGK+YLLEKP+ ADVAL++A KADK GN+ Y GS NNFN++MA Sbjct: 125 GIGTEVAKGKEVITIDGKDYLLEKPLKADVALIFANKADKNGNLQYAGSENNFNHVMAAN 184 Query: 181 AKTTXXXXXXXXXXXXXDPNEVVTPNIFVNYIVEG 215 AKTT DPN V TP IFVNY+V+G Sbjct: 185 AKTTIVEAREIVDVGQMDPNFVHTPGIFVNYLVKG 219 >Q1JKP2.1 Q1JKP2_STRPC Acetate CoA-transferase alpha subunit EC=2.8.3.8 Length = 220 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 134/215 (62%), Positives = 166/215 (77%) Query: 1 MNKVVALDEAIAHIKDGDVVMIGGFMANGTPEKLVDALVEANIKDITLICNDTGFINRGS 60 M K + + EA+AH+KDGD +M+GGFM NGTPEKL+DALVE +KD+TLICND GF ++G Sbjct: 5 MCKEITIKEAVAHVKDGDTIMVGGFMTNGTPEKLIDALVEKGVKDLTLICNDAGFPDKGV 64 Query: 61 GKLVSNKQCKKIMASHIGTNKETGRQMTEGETEVVLIPQGTLVEQIRAGGYGLGGVLTAT 120 GK+V+NKQ I+ASHIG N+E GRQMTEGET + L+PQGTL E+IR+GG+GLGG LT T Sbjct: 65 GKMVANKQFSTIIASHIGLNREAGRQMTEGETVIDLVPQGTLAERIRSGGFGLGGFLTPT 124 Query: 121 GIGTLVEEGKEKIVVDGKEYLLEKPITADVALLYAAKADKAGNMVYKGSANNFNNIMAGA 180 GIGT V +GKE I +DGK+YLLEKP+ AD+AL++A KADK GN+ Y GS NNFN++MA Sbjct: 125 GIGTEVAKGKEVITIDGKDYLLEKPLKADIALIFANKADKNGNLQYAGSENNFNHVMAAN 184 Query: 181 AKTTXXXXXXXXXXXXXDPNEVVTPNIFVNYIVEG 215 AKTT DPN V TP IFVNY+V+G Sbjct: 185 AKTTIVEAREVVDVGQMDPNFVHTPGIFVNYLVKG 219 >Q1JAJ0.1 Q1JAJ0_STRPB Acetate CoA-transferase alpha subunit EC=2.8.3.8 Length = 220 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 134/215 (62%), Positives = 166/215 (77%) Query: 1 MNKVVALDEAIAHIKDGDVVMIGGFMANGTPEKLVDALVEANIKDITLICNDTGFINRGS 60 M K + + EA+AH+KDGD +M+GGFM NGTPEKL+DALVE +KD+TLICND GF ++G Sbjct: 5 MCKEITIKEAVAHVKDGDTIMVGGFMTNGTPEKLIDALVEKGVKDLTLICNDAGFPDKGV 64 Query: 61 GKLVSNKQCKKIMASHIGTNKETGRQMTEGETEVVLIPQGTLVEQIRAGGYGLGGVLTAT 120 GK+V+NKQ I+ASHIG N+E GRQMTEGET + L+PQGTL E+IR+GG+GLGG LT T Sbjct: 65 GKMVANKQFSTIIASHIGLNREAGRQMTEGETVIDLVPQGTLAERIRSGGFGLGGFLTPT 124 Query: 121 GIGTLVEEGKEKIVVDGKEYLLEKPITADVALLYAAKADKAGNMVYKGSANNFNNIMAGA 180 GIGT V +GKE I +DGK+YLLEKP+ AD+AL++A KADK GN+ Y GS NNFN++MA Sbjct: 125 GIGTEVAKGKEVITIDGKDYLLEKPLKADIALIFANKADKNGNLQYAGSENNFNHVMAAN 184 Query: 181 AKTTXXXXXXXXXXXXXDPNEVVTPNIFVNYIVEG 215 AKTT DPN V TP IFVNY+V+G Sbjct: 185 AKTTIVEAREVVDVGQMDPNFVHTPGIFVNYLVKG 219 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,225,987,344 Number of extensions: 49348370 Number of successful extensions: 124122 Number of sequences better than 1.0e-05: 1167 Number of HSP's gapped: 123550 Number of HSP's successfully gapped: 1167 Length of query: 217 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 87 Effective length of database: 1,835,964,253 Effective search space: 159728890011 Effective search space used: 159728890011 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)