BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0012.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q183A9.1 Q183A9_CLOD6 LysR-family transcriptional regulator 357 6e-97 A8U755.1 A8U755_9LACT Transcriptional regulator, LysR family pro... 236 2e-60 Q1JNU1.1 Q1JNU1_STRPC Transcriptional regulators, LysR family 234 7e-60 Q1JIY8.1 Q1JIY8_STRPD Transcriptional regulators, LysR family 234 7e-60 Q1JDY4.1 Q1JDY4_STRPB Transcriptional regulators, LysR family 234 7e-60 >Q183A9.1 Q183A9_CLOD6 LysR-family transcriptional regulator Length = 300 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 170/297 (57%), Positives = 226/297 (76%) Query: 5 KHLEYFIEIVNSSCNLSVAAKKLCVTQPSLSLLIKNFEDEENVNLFERYKGRLQNLTPAG 64 K L+YF+EIV S NLS+A+K L ++QP+LS +IKNFE+ E+V LFERYKGRL LTPAG Sbjct: 4 KQLKYFVEIVKSGFNLSIASKTLHISQPALSQIIKNFEESEDVYLFERYKGRLNGLTPAG 63 Query: 65 ERFFENAKILVKTYQNMLAELREDSFQFKGKXXXXXXXXXXXXXFADILSGMLSTNPDIK 124 ERF+ NA+ ++ Y+NM+ +LREDS QFKGK F+D+++ +++ NPDI+ Sbjct: 64 ERFYVNAEHIINEYKNMMEDLREDSVQFKGKVRIGIPPLILGIAFSDVVAQLVANNPDIE 123 Query: 125 FEIIEAGAYELRRMLTLKELDFAILLQPTNIDPTTINEYLLQEDELTAFMSSSNPLANHE 184 F+I+E GAY+L RML L+ELD+A+LL P ID + + E++LQEDELTAF++ ++PLA + Sbjct: 124 FDIVEKGAYDLNRMLILQELDYAVLLHPHKIDKSVVTEHVLQEDELTAFLNINHPLAKKD 183 Query: 185 KIHWKQLNNEPLAIFNHTFMIHHKLLEQFKKENIQPQISILSASWDFLLQVTKRSKFITI 244 KI W LN + LAIFN TFMIHHKL+++F EN++ + I+S SWDFLL T S FITI Sbjct: 184 KIDWNDLNEQLLAIFNPTFMIHHKLMQKFTDENVKLKRYIMSGSWDFLLLSTTNSDFITI 243 Query: 245 LPSPVHDFFNISDIIEVPFHQPITWKVILCQPAKDRYSHVERHVKKIIIDHFAQNSS 301 LPSPVHDFF S IIE PF+ PITWKVILC+P K+RYSHV++HV K IID F++ +S Sbjct: 244 LPSPVHDFFENSKIIEKPFNHPITWKVILCRPKKERYSHVDQHVFKFIIDFFSKKNS 300 >A8U755.1 A8U755_9LACT Transcriptional regulator, LysR family protein Length = 296 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 183/291 (62%) Query: 6 HLEYFIEIVNSSCNLSVAAKKLCVTQPSLSLLIKNFEDEENVNLFERYKGRLQNLTPAGE 65 L YFI IV CNLS+AAKK+ ++Q +LS +I NFE +E ++LF R GRL+ +TP+G Sbjct: 5 QLNYFINIVECGCNLSLAAKKIHISQSALSQMITNFEKDEELSLFYRKNGRLEEMTPSGI 64 Query: 66 RFFENAKILVKTYQNMLAELREDSFQFKGKXXXXXXXXXXXXXFADILSGMLSTNPDIKF 125 + + A ++K + M +R++S + KG F++ S + NP+IK Sbjct: 65 KLYRYALDILKMHDEMKNMIRKESSKQKGTIRLGVPSLILRVFFSNFFSKFIVENPEIKI 124 Query: 126 EIIEAGAYELRRMLTLKELDFAILLQPTNIDPTTINEYLLQEDELTAFMSSSNPLANHEK 185 EI+E G ELRRM K+LD+ +L++PTN+DP E+++Q DELTAFMS+++ L+ K Sbjct: 125 EIVEDGCNELRRMFLQKDLDYVVLIEPTNLDPKAYEEHVIQIDELTAFMSTTHDLSRKNK 184 Query: 186 IHWKQLNNEPLAIFNHTFMIHHKLLEQFKKENIQPQISILSASWDFLLQVTKRSKFITIL 245 I+W ++++ P+A FN +F+ + + FK++N +I S+SWDFL++ T+ S I IL Sbjct: 185 INWTEIDDYPIATFNESFVTNDLVKRTFKEQNSNAEIIFTSSSWDFLIETTRYSDTIAIL 244 Query: 246 PSPVHDFFNISDIIEVPFHQPITWKVILCQPAKDRYSHVERHVKKIIIDHF 296 PSP+ + N D +E F PI + V+LC+P K YS VE ++ + ++ +F Sbjct: 245 PSPIGRYLNSEDYVEKTFKNPIPFNVLLCRPIKTNYSVVETNLHESVLSYF 295 >Q1JNU1.1 Q1JNU1_STRPC Transcriptional regulators, LysR family Length = 303 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 185/299 (61%), Gaps = 13/299 (4%) Query: 7 LEYFIEIVNSSCNLSVAAKKLCVTQPSLSLLIKNFEDEENVNLFERYKGRLQNLTPAGER 66 L YFIEIVN NL+ AA+K ++QP+LS IK E EE V LF+R KGRL LT GER Sbjct: 6 LAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGER 65 Query: 67 FFENAKILVKTYQNMLAELREDSFQFKGKXXXXXXXXXXXXXFADILSGMLSTNPDIKFE 126 FFENAK+++ +++ ++A+LR +S ++KG+ F++++ ++ NP++KF Sbjct: 66 FFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFH 125 Query: 127 IIEAGAYELRRMLTLKELDFAILLQPTNIDPTTINEYLLQEDELTAFMS--------SSN 178 I+E GAYEL++ L LKE+DFAILL PT +D T + +L D+L +MS SN Sbjct: 126 IVETGAYELQKKLFLKEVDFAILLTPTTLDATIADIDILLRDQLCLYMSHKTFQETFDSN 185 Query: 179 PLANHEKIHWKQLNNEPLAIFNHTFMIHHKLLEQFKKENIQPQISILSASWDFLLQVTKR 238 P I K L+ + L F+ TFMI+H+L F++ N P + SASWDFLL T+ Sbjct: 186 P-----NISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY 240 Query: 239 SKFITILPSPVHDFFNISDIIEVPFHQPITWKVILCQPAKDRYSHVERHVKKIIIDHFA 297 S ++TILP P+ F ++ ++EV + W+V+L ++ SH++ ++K I+D+F Sbjct: 241 SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFT 299 >Q1JIY8.1 Q1JIY8_STRPD Transcriptional regulators, LysR family Length = 303 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 185/299 (61%), Gaps = 13/299 (4%) Query: 7 LEYFIEIVNSSCNLSVAAKKLCVTQPSLSLLIKNFEDEENVNLFERYKGRLQNLTPAGER 66 L YFIEIVN NL+ AA+K ++QP+LS IK E EE V LF+R KGRL LT GER Sbjct: 6 LAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGER 65 Query: 67 FFENAKILVKTYQNMLAELREDSFQFKGKXXXXXXXXXXXXXFADILSGMLSTNPDIKFE 126 FFENAK+++ +++ ++A+LR +S ++KG+ F++++ ++ NP++KF Sbjct: 66 FFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFH 125 Query: 127 IIEAGAYELRRMLTLKELDFAILLQPTNIDPTTINEYLLQEDELTAFMS--------SSN 178 I+E GAYEL++ L LKE+DFAILL PT +D T + +L D+L +MS SN Sbjct: 126 IVETGAYELQKKLFLKEVDFAILLTPTTLDATIADIDILLRDQLCLYMSHKTFQETFDSN 185 Query: 179 PLANHEKIHWKQLNNEPLAIFNHTFMIHHKLLEQFKKENIQPQISILSASWDFLLQVTKR 238 P I K L+ + L F+ TFMI+H+L F++ N P + SASWDFLL T+ Sbjct: 186 P-----NISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY 240 Query: 239 SKFITILPSPVHDFFNISDIIEVPFHQPITWKVILCQPAKDRYSHVERHVKKIIIDHFA 297 S ++TILP P+ F ++ ++EV + W+V+L ++ SH++ ++K I+D+F Sbjct: 241 SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFT 299 >Q1JDY4.1 Q1JDY4_STRPB Transcriptional regulators, LysR family Length = 303 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 122/299 (40%), Positives = 185/299 (61%), Gaps = 13/299 (4%) Query: 7 LEYFIEIVNSSCNLSVAAKKLCVTQPSLSLLIKNFEDEENVNLFERYKGRLQNLTPAGER 66 L YFIEIVN NL+ AA+K ++QP+LS IK E EE V LF+R KGRL LT GER Sbjct: 6 LAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGER 65 Query: 67 FFENAKILVKTYQNMLAELREDSFQFKGKXXXXXXXXXXXXXFADILSGMLSTNPDIKFE 126 FFENAK+++ +++ ++A+LR +S ++KG+ F++++ ++ NP++KF Sbjct: 66 FFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFH 125 Query: 127 IIEAGAYELRRMLTLKELDFAILLQPTNIDPTTINEYLLQEDELTAFMS--------SSN 178 I+E GAYEL++ L LKE+DFAILL PT +D T + +L D+L +MS SN Sbjct: 126 IVETGAYELQKKLFLKEVDFAILLTPTTLDATIADIDILLRDQLCLYMSHKTFQETFDSN 185 Query: 179 PLANHEKIHWKQLNNEPLAIFNHTFMIHHKLLEQFKKENIQPQISILSASWDFLLQVTKR 238 P I K L+ + L F+ TFMI+H+L F++ N P + SASWDFLL T+ Sbjct: 186 P-----NISIKALHRQNLVTFDKTFMINHQLTTLFEEANSLPVVKCYSASWDFLLNCTRY 240 Query: 239 SKFITILPSPVHDFFNISDIIEVPFHQPITWKVILCQPAKDRYSHVERHVKKIIIDHFA 297 S ++TILP P+ F ++ ++EV + W+V+L ++ SH++ ++K I+D+F Sbjct: 241 SSYLTILPRPITHFAHMDGLVEVQLTEHPKWEVVLASLKHNKTSHLKHYIKHTILDYFT 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,655,185,674 Number of extensions: 65459320 Number of successful extensions: 172666 Number of sequences better than 1.0e-05: 2569 Number of HSP's gapped: 174499 Number of HSP's successfully gapped: 2569 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)