BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0010.p (332 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9H0.1 B3K9H0_9BACI Oxidoreductase domain protein 403 e-110 B1D7P2.1 B1D7P2_9BACL Oxidoreductase domain protein 365 3e-99 A7NNX5.1 A7NNX5_ROSCS Oxidoreductase domain protein 305 6e-81 A5V048.1 A5V048_ROSS1 Oxidoreductase domain protein 283 1e-74 B9XBC2.1 B9XBC2_9BACT Oxidoreductase domain protein 265 5e-69 >B3K9H0.1 B3K9H0_9BACI Oxidoreductase domain protein Length = 331 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/330 (59%), Positives = 238/330 (72%), Gaps = 1/330 (0%) Query: 3 IDNAYKVKWGILSTGWIAHQFATDLAHASNGVAYAVGSRNQESADEFAKNHGIPVAHATY 62 + N KVKWGI+ TGWIA QFA DLA+ N AVGSR SA EFA + IP A+ +Y Sbjct: 2 VQNPGKVKWGIMGTGWIAEQFAADLAYVDNAQFLAVGSRTASSAGEFASKYDIPRAYGSY 61 Query: 63 EDLVNDPEVDAVYIGTPHPFHKDNALLALRAGKAVLCEKPFTVNSGELEEIVAYAREHKL 122 E+LV+DP+VD VYI TPHP H+D+AL+ L+AGK+VLCEKPFT+N ELEE+VA AREHKL Sbjct: 62 EELVSDPDVDVVYIATPHPMHRDHALMCLQAGKSVLCEKPFTINGDELEELVAAAREHKL 121 Query: 123 FLMEAMWSRYIPANVKVREWVAAQRIGDVRLVKADLGFRAGWNPEXXXXXXXXXXXXXXD 182 FLMEAMW+R++ +VREW+ IGDVRLVKAD GFR+GWNP+ D Sbjct: 122 FLMEAMWTRFLSPIRQVREWLKDGLIGDVRLVKADFGFRSGWNPQGRLLNLELGGGALLD 181 Query: 183 VGIYPVSFASMIFGPHPESVASTVHMGETGVDEHFSLLLSYGGGKTASLNGGVRLNMLQE 242 GIYPVSFA+MIFG PE + ST H+GETGVDE FS++LSY GKTASLNG +RL + E Sbjct: 182 AGIYPVSFAAMIFGAEPEKIWSTAHIGETGVDEQFSVILSYESGKTASLNGAIRLGLTNE 241 Query: 243 AYVFGTEGHIVVKGSFVNPRSAELYVGGELVETFEDDRTSIGYAFEAEEVGRCLQAGLTE 302 AY++GT GHI + SF+N SA L+V GE DDR GY+FEA EVGRCL G E Sbjct: 242 AYIYGTNGHIHIP-SFLNATSAALHVDGEEPVVVTDDRQEKGYSFEAYEVGRCLLEGRLE 300 Query: 303 SPALTLDESLAILKLLDRVRAEWGLVYPGE 332 S + LDESLAI++LLD++R +WGL YP E Sbjct: 301 SDVMPLDESLAIMRLLDQIRGQWGLKYPSE 330 >B1D7P2.1 B1D7P2_9BACL Oxidoreductase domain protein Length = 328 Score = 365 bits (937), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 177/324 (54%), Positives = 226/324 (69%), Gaps = 1/324 (0%) Query: 9 VKWGILSTGWIAHQFATDLAHASNGVAYAVGSRNQESADEFAKNHGIPVAHATYEDLVND 68 +KWGIL GWIA QFA DLA A + AVGSR+ E A EFA G A+ +YE+LVND Sbjct: 6 IKWGILGAGWIASQFARDLAFAQDAELSAVGSRSLEKAAEFAGKFGGKRAYGSYEELVND 65 Query: 69 PEVDAVYIGTPHPFHKDNALLALRAGKAVLCEKPFTVNSGELEEIVAYAREHKLFLMEAM 128 E+D +Y+ TPHP HK++ L LRAGKAVLCEKPFTVN E EE+V YAR++++FLMEAM Sbjct: 66 AEIDIIYVATPHPSHKEHVLQCLRAGKAVLCEKPFTVNVKEAEEVVQYARDNRVFLMEAM 125 Query: 129 WSRYIPANVKVREWVAAQRIGDVRLVKADLGFRAGWNPEXXXXXXXXXXXXXXDVGIYPV 188 W+R++P KVREW+A RIG+VRL+KAD GFR G NPE DVGIYP+ Sbjct: 126 WTRFLPVIRKVREWIAEGRIGEVRLLKADFGFRTGVNPEGRLFKPALAGGALLDVGIYPL 185 Query: 189 SFASMIFGPHPESVASTVHMGETGVDEHFSLLLSYGGGKTASLNGGVRLNMLQEAYVFGT 248 SFASM+FG P+ + ST H+GETGVDE S+LLSY GG+TA L+ +RLN +AY+ GT Sbjct: 186 SFASMLFGAKPKQILSTAHLGETGVDEENSILLSYEGGQTALLSSAIRLNSGSDAYIMGT 245 Query: 249 EGHIVVKGSFVNPRSAELYVGGELVETFEDDRTSIGYAFEAEEVGRCLQAGLTESPALTL 308 EG I + SF N +SA L ETF DDRT++GY +EAE G+ L+ G ES ++L Sbjct: 246 EGSIKIP-SFFNAKSATLIAADGTEETFSDDRTTLGYVYEAEAAGQYLREGKLESEVISL 304 Query: 309 DESLAILKLLDRVRAEWGLVYPGE 332 DE+L +++ +D +R +WGL YP E Sbjct: 305 DETLQLMRTMDEIRGQWGLRYPFE 328 >A7NNX5.1 A7NNX5_ROSCS Oxidoreductase domain protein Length = 329 Score = 305 bits (780), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 149/324 (45%), Positives = 201/324 (62%) Query: 9 VKWGILSTGWIAHQFATDLAHASNGVAYAVGSRNQESADEFAKNHGIPVAHATYEDLVND 68 ++WGILSTG IA FA L + AVGSR+ ++A F +P +A+YE+L D Sbjct: 6 IRWGILSTGRIAGVFAEALQSLDDARLVAVGSRSADAAAAFGDRFNVPRRYASYEELAAD 65 Query: 69 PEVDAVYIGTPHPFHKDNALLALRAGKAVLCEKPFTVNSGELEEIVAYAREHKLFLMEAM 128 PEVD VYI TPH H +N LL L GKAVLCEKPFT+N+ + E++A ARE +FLMEAM Sbjct: 66 PEVDIVYIATPHALHAENCLLCLHYGKAVLCEKPFTINARQAAEVIAVARERGMFLMEAM 125 Query: 129 WSRYIPANVKVREWVAAQRIGDVRLVKADLGFRAGWNPEXXXXXXXXXXXXXXDVGIYPV 188 W+R++PA ++RE +AA IG+VR++ +D GFR+ +P DVG+YPV Sbjct: 126 WTRFLPAIARLRELLAANAIGEVRMIASDFGFRSSVDPRSRLFDPALGGGSLLDVGVYPV 185 Query: 189 SFASMIFGPHPESVASTVHMGETGVDEHFSLLLSYGGGKTASLNGGVRLNMLQEAYVFGT 248 S SMIFG PE +A+ H+G TGVDE +++L Y G+ A L +R E + GT Sbjct: 186 SLTSMIFGGEPERIATLAHLGATGVDEEAAMILGYSSGRMAMLWSAIRTETPHETTIMGT 245 Query: 249 EGHIVVKGSFVNPRSAELYVGGELVETFEDDRTSIGYAFEAEEVGRCLQAGLTESPALTL 308 +G I V + R+ L GG E E + GY +EA E RCL+AG+TESP + L Sbjct: 246 DGMIRVHPQWWRARTLTLIRGGRADEVIEAPYSGNGYQYEAIEAMRCLRAGMTESPVMPL 305 Query: 309 DESLAILKLLDRVRAEWGLVYPGE 332 DE+L I++ LD +RA+WGL YP E Sbjct: 306 DETLGIMRTLDAIRAQWGLTYPME 329 >A5V048.1 A5V048_ROSS1 Oxidoreductase domain protein Length = 329 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/324 (44%), Positives = 197/324 (60%) Query: 9 VKWGILSTGWIAHQFATDLAHASNGVAYAVGSRNQESADEFAKNHGIPVAHATYEDLVND 68 V+WGILSTG IA FA L + AVGSR+ +SA F +P +A+YE+L D Sbjct: 6 VRWGILSTGRIAGVFAEALQSIDDAHLVAVGSRSADSAAAFGDRFDVPRRYASYEELAAD 65 Query: 69 PEVDAVYIGTPHPFHKDNALLALRAGKAVLCEKPFTVNSGELEEIVAYAREHKLFLMEAM 128 P+VD +Y TPH H +N LL L GKAVLCEKPFT+N+ + E+VA ARE LFLMEAM Sbjct: 66 PDVDIIYNATPHALHYENCLLCLNHGKAVLCEKPFTINARQAAEVVAVARERGLFLMEAM 125 Query: 129 WSRYIPANVKVREWVAAQRIGDVRLVKADLGFRAGWNPEXXXXXXXXXXXXXXDVGIYPV 188 W+R++PA V++RE +A IG+VR++ +D GFRAG +P+ DVG+Y V Sbjct: 126 WTRFLPAIVRLRELLAQGVIGEVRMIASDFGFRAGVDPQSRLFDPALGGGSLLDVGVYTV 185 Query: 189 SFASMIFGPHPESVASTVHMGETGVDEHFSLLLSYGGGKTASLNGGVRLNMLQEAYVFGT 248 S ASM+ G PE +A+ +G TGVDE +++L Y GG+ A L +R E + GT Sbjct: 186 SLASMVLGGEPERLATLADLGSTGVDEQAAMILGYSGGRMAVLWSAIRTETPHETTIMGT 245 Query: 249 EGHIVVKGSFVNPRSAELYVGGELVETFEDDRTSIGYAFEAEEVGRCLQAGLTESPALTL 308 G I + + S ++ G+ E GY FEA E RCL+AGL+ES + L Sbjct: 246 GGMIRIHPQWWRATSLTVHRSGQGDEAIHLPFNGNGYQFEALEAMRCLRAGLSESQVMPL 305 Query: 309 DESLAILKLLDRVRAEWGLVYPGE 332 DE+L I++ +D +RA+WGL YP E Sbjct: 306 DETLGIMRTMDAIRAQWGLKYPME 329 >B9XBC2.1 B9XBC2_9BACT Oxidoreductase domain protein Length = 326 Score = 265 bits (677), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 145/333 (43%), Positives = 198/333 (59%), Gaps = 18/333 (5%) Query: 8 KVKWGILSTGWIAHQFATDLAHASNGVAYAVGSRNQESADEFAKNHGIPVAHATYEDLVN 67 K++WGIL TG IA +FA L + A+GSR Q AD FA +P HA+YE LV+ Sbjct: 4 KIRWGILGTGAIAKKFAAGLHTLPDAELVAIGSRTQARADAFAVESNVPYRHASYESLVS 63 Query: 68 DPEVDAVYIGTPHPFHKDNALLALRAGKAVLCEKPFTVNSGELEEIVAYAREHKLFLMEA 127 D +VDAVY+ TPH H +N LLAL AGK VLCEKPFT+N+ + E+++ +ARE K+ LMEA Sbjct: 64 DSKVDAVYVATPHSLHAENILLALEAGKPVLCEKPFTINAVQAEQVIHFAREKKILLMEA 123 Query: 128 MWSRYIPANVKVREWVAAQRIGDVRLVKADLGFRAG------WNPEXXXXXXXXXXXXXX 181 MW+R++P V++RE +A IG+V ++ AD GF+A ++P Sbjct: 124 MWTRFLPLMVRLRELLAEGVIGEVEVLTADFGFKADRRGGRLFDPALGGGALLDLG---- 179 Query: 182 DVGIYPVSFASMIFGPHPESVASTVHMGETGVDEHFSLLLSYGGGKTASLNGGVRLNMLQ 241 +YPVS A MIFGP P V V +G TGVDE +++ + G+ A L + N Sbjct: 180 ---VYPVSLAYMIFGP-PVQVTGLVEIGTTGVDEKAAMIFKHAKGQLALLQTLITANTFH 235 Query: 242 EAYVFGTEGHIVVKGSFV--NPRSAELYVGGELVETFEDDRTSIGYAFEAEEVGRCLQAG 299 EA + GTEG I + S+ + + L GGE E E T GY FEAE C++ G Sbjct: 236 EASLVGTEGKITLHKSWWKGSDMTVALDNGGE--ELLEFPYTGNGYQFEAEAFMDCMRNG 293 Query: 300 LTESPALTLDESLAILKLLDRVRAEWGLVYPGE 332 TE ++LDE+LAI+K +D +RA+WGL YP E Sbjct: 294 KTECAVMSLDETLAIMKTMDALRAQWGLKYPME 326 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,972,252,914 Number of extensions: 79544936 Number of successful extensions: 186443 Number of sequences better than 1.0e-05: 2703 Number of HSP's gapped: 185123 Number of HSP's successfully gapped: 2706 Length of query: 332 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 196 Effective length of database: 1,779,438,163 Effective search space: 348769879948 Effective search space used: 348769879948 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)