BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0311.0007.p
         (129 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D9B2.1 B1D9B2_9BACL NUDIX hydrolase                                 165   1e-39
A4CI90.1 A4CI90_9FLAO Nudix (MutT) family hydrolase/pyrophosphatase   129   8e-29
C0GD44.1 C0GD44_9FIRM NUDIX hydrolase                                 115   1e-24
C1Z8A3.1 C1Z8A3_PEDHE ADP-ribose pyrophosphatase                      113   6e-24
A6TSB5.1 A6TSB5_ALKMQ NUDIX hydrolase                                 112   9e-24

>B1D9B2.1 B1D9B2_9BACL NUDIX hydrolase
          Length = 132

 Score =  165 bits (418), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/124 (64%), Positives = 95/124 (76%)

Query: 1   VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60
           +IEVAAAII N +G ILIARR+QGKSQAG+WEFPGGK+E GE A ACL+REL+EEM I I
Sbjct: 1   MIEVAAAIIENGQGQILIARRKQGKSQAGMWEFPGGKIEAGETAEACLKRELLEEMHIEI 60

Query: 61  LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120
            PYA FGVN+H Y    IRL+A+++ F+ G I L DHD +RW T+ EL  F FAPADI F
Sbjct: 61  NPYAYFGVNDHHYGATHIRLIAYKSTFVSGEIMLVDHDEYRWSTSAELGEFTFAPADILF 120

Query: 121 VNRL 124
           V  L
Sbjct: 121 VEML 124


>A4CI90.1 A4CI90_9FLAO Nudix (MutT) family hydrolase/pyrophosphatase
          Length = 145

 Score =  129 bits (324), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 62/128 (48%), Positives = 81/128 (63%)

Query: 1   VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60
           +IEV A II N    +LI RR+ GK  AG WEFPGGK+E  E    CL RE+MEE+ I I
Sbjct: 1   MIEVTAGIIQNASKKVLITRRKAGKHLAGFWEFPGGKIEADETPEVCLAREIMEELNIGI 60

Query: 61  LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120
              + F  + +DYD  +I L  + A++LEG I L+DHD ++WV   EL  + FAPADIP 
Sbjct: 61  SVRSHFMDSTYDYDTKSICLKGYLADYLEGDIILTDHDQYKWVAQSELSKYEFAPADIPI 120

Query: 121 VNRLLEPL 128
           V +L+  L
Sbjct: 121 VKKLMHDL 128


>C0GD44.1 C0GD44_9FIRM NUDIX hydrolase
          Length = 128

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 77/124 (62%)

Query: 1   VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60
           +I+V AAI+ N +G +LIA+R+QGK  AG WEFPGGK+E GE     L REL EEM I I
Sbjct: 1   MIDVVAAILENHQGQVLIAKRKQGKKMAGFWEFPGGKVEAGESPEQSLIRELNEEMNIEI 60

Query: 61  LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120
                 G N H Y    I+L+A++     G I L+DHD + W+  ++L+    APAD+PF
Sbjct: 61  EIGDYVGENVHFYQEGPIKLLAYKCSVKAGDIKLTDHDRYVWINVEDLNKVRLAPADVPF 120

Query: 121 VNRL 124
           +  L
Sbjct: 121 IEML 124


>C1Z8A3.1 C1Z8A3_PEDHE ADP-ribose pyrophosphatase
          Length = 126

 Score =  113 bits (282), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 75/126 (59%), Gaps = 1/126 (0%)

Query: 1   VIEVAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAI 60
           +I VAAAII   E  +LIARR   K  AG WEFPGGK+E  E+  ACL REL EE+ I I
Sbjct: 1   MISVAAAIIFR-ENKVLIARRAAHKHLAGYWEFPGGKIEPREEPEACLVRELAEELMIII 59

Query: 61  LPYAAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPF 120
                   + H+Y  FTI L A+   F+ G I L+DHD   WV   +L  +  APAD+P 
Sbjct: 60  QVKHHIMDHIHNYGNFTITLKAYSCTFVSGEIILTDHDEVLWVNVDDLPSYHLAPADVPI 119

Query: 121 VNRLLE 126
            NRL++
Sbjct: 120 ANRLMQ 125


>A6TSB5.1 A6TSB5_ALKMQ NUDIX hydrolase
          Length = 127

 Score =  112 bits (281), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 2/125 (1%)

Query: 4   VAAAIIHNDEGCILIARRRQGKSQAGLWEFPGGKLEDGEDAPACLRRELMEEMGIAILPY 63
            AA I+ ND   +LIA+R + +   G+WE PGGK+E GE    CL+RE+ EE+ I I   
Sbjct: 5   TAAIIMKND--LVLIAQRGKNEKLQGMWELPGGKMEKGETPQGCLKREIQEELNIEIEVG 62

Query: 64  AAFGVNEHDYDGFTIRLMAWEAEFLEGRITLSDHDAFRWVTAKELDGFAFAPADIPFVNR 123
             FG + + Y    I+L+A+ ++ + G I LS HD  +WV+ KELD F F+PADIP + R
Sbjct: 63  DFFGESTYRYATGEIKLLAYFSKKVTGEIQLSVHDQVKWVSMKELDQFDFSPADIPLIKR 122

Query: 124 LLEPL 128
           L+E +
Sbjct: 123 LMEEM 127


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.142    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 831,813,744
Number of extensions: 32941062
Number of successful extensions: 65429
Number of sequences better than 1.0e-05: 1119
Number of HSP's gapped: 65564
Number of HSP's successfully gapped: 1119
Length of query: 129
Length of database: 3,060,696,203
Length adjustment: 94
Effective length of query: 35
Effective length of database: 2,175,120,793
Effective search space: 76129227755
Effective search space used: 76129227755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)