BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0311.0006.p
         (238 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z6C5.1 C0Z6C5_BREBN Putative uncharacterized protein                159   2e-37
Q7NJX4.1 Q7NJX4_GLOVI Glr1707 protein                                  72   5e-11
C0ZM64.1 C0ZM64_RHOE4 Putative uncharacterized protein                 68   6e-10
Q0S935.1 Q0S935_RHOSR Putative uncharacterized protein                 68   7e-10
C3JQ28.1 C3JQ28_RHOER Putative uncharacterized protein                 67   2e-09

>C0Z6C5.1 C0Z6C5_BREBN Putative uncharacterized protein
          Length = 228

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 101/158 (63%)

Query: 67  EQLNGAWNIADTSKVYWSVTTSKETVNFVDPAVTGTWNVNLDDAGAMTGEGTVEMSALDS 126
           +QLN  W I D SKVY+SVTTSKETVNF    +TG+W+VNL     M    + +++ L+S
Sbjct: 56  DQLNKKWTINDQSKVYFSVTTSKETVNFEMDGITGSWDVNLSAPDQMKATASADLNKLNS 115

Query: 127 GNAQRDEHVKGADFLSVTEFPQSTFTVKSFSELPAEWTEGTAVPVQLQGTMTVKGIEKEV 186
           GN +RD H+K  D+      P +TF  KSF   P+ WTEG      + G +TV+GI K+V
Sbjct: 116 GNEKRDTHIKSPDYFDTAVHPAATFEAKSFENWPSTWTEGQKASFTINGVLTVRGIAKDV 175

Query: 187 TFDSQAVYSGGQLMLSGTTTVTFEDFGMANPHSIVLDT 224
             D+ A+YS G+L L GT+ VTF DFG+ +PH+IV  T
Sbjct: 176 KIDADAIYSQGKLQLEGTSVVTFGDFGLTSPHTIVAKT 213


>Q7NJX4.1 Q7NJX4_GLOVI Glr1707 protein
          Length = 231

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 115 GEGTVEMSALDSGNAQRDEHVKGADFLSVTEFPQSTFTVKSFSELP--AEWTE-GTAVPV 171
           GE  + ++A+DSGN  RD  ++G +FL   ++P++TF V      P  AEW + G     
Sbjct: 99  GEIQIGLAAIDSGNGARDARMRG-EFLQTEKYPKATFVVTKLEGFPSVAEWKKWGLKQTG 157

Query: 172 QLQGTMTVKGIEKEVTFDSQAVYSGGQLMLSGTTTVTFEDFGMANP 217
           ++ G +T+K + + V F+++AVY G +L +SG       DFG++ P
Sbjct: 158 KIHGDLTIKEVTRPVVFEAEAVYLGTELKVSGKGQTKMTDFGISPP 203


>C0ZM64.1 C0ZM64_RHOE4 Putative uncharacterized protein
          Length = 227

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 65/104 (62%), Gaps = 1/104 (0%)

Query: 114 TGEGTVEMSALDSGNAQRDEHVKGADFLSVTEFPQSTFTVKSFSELPAEWTEGTAVPVQL 173
           +GE TV+++++ + + +RD    G + + ++ +P +TFT+ S  +L A  T+GT   V +
Sbjct: 103 SGEVTVQVASIKTDSDRRDGQFTG-NVMDISTYPTATFTIDSPVDLAAVPTDGTTATVTV 161

Query: 174 QGTMTVKGIEKEVTFDSQAVYSGGQLMLSGTTTVTFEDFGMANP 217
            GT+T+KG  K V+ D   ++SG  L+ SG+  VT+ DFG+  P
Sbjct: 162 SGTLTLKGQSKPVSVDMTVLHSGDSLIASGSIPVTWTDFGVEPP 205


>Q0S935.1 Q0S935_RHOSR Putative uncharacterized protein
          Length = 227

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 7/119 (5%)

Query: 102 TWNVNLDDAGAMTGEGTVEMSALDSGNAQRDEHVKGADFLSVTEFPQSTFTVKS---FSE 158
           T N  ++D     GE TV+++ + +  ++RD   +G + +    FP +TFTV S    S 
Sbjct: 91  TGNATVEDEKLTAGEVTVQVATIATDQSRRDNQFRG-NVMDTGTFPTATFTVDSPVDLSG 149

Query: 159 LPAEWTEGTAVPVQLQGTMTVKGIEKEVTFDSQAVYSGGQLMLSGTTTVTFEDFGMANP 217
           LPA+ + GT   V  QGT+T+KG  + VT D   + SG  L+ SG+  VT+ DFG+  P
Sbjct: 150 LPADGSVGT---VSAQGTLTLKGQSRPVTVDIDVLRSGDDLIASGSIPVTWTDFGVTPP 205


>C3JQ28.1 C3JQ28_RHOER Putative uncharacterized protein
          Length = 227

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 114 TGEGTVEMSALDSGNAQRDEHVKGADFLSVTEFPQSTFTVKSFSELPAEWTEGTAVPVQL 173
           +GE TV+++++ + + +RD    G + +  + +P +TFT+ S  +L A  T+GT   V +
Sbjct: 103 SGEVTVQVASIKTDSDRRDGQFTG-NVMDTSTYPTATFTIDSPVDLSAVPTDGTTATVTV 161

Query: 174 QGTMTVKGIEKEVTFDSQAVYSGGQLMLSGTTTVTFEDFGMANP 217
            GT+T+KG  K V+ D   ++SG  L+ SG+  VT+ DFG+  P
Sbjct: 162 SGTLTLKGQSKPVSVDMTVLHSGDSLIASGSIPVTWTDFGVEPP 205


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.310    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,066,398,736
Number of extensions: 37895403
Number of successful extensions: 69714
Number of sequences better than 1.0e-05: 125
Number of HSP's gapped: 69986
Number of HSP's successfully gapped: 125
Length of query: 238
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 106
Effective length of database: 1,817,122,223
Effective search space: 192614955638
Effective search space used: 192614955638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)