BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0003.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2PAZ0.1 C2PAZ0_BACCE Putative uncharacterized protein 157 4e-37 B1DFC7.1 B1DFC7_9BACL Putative uncharacterized protein 157 4e-37 C2SG17.1 C2SG17_BACCE Putative uncharacterized protein 157 5e-37 C3A201.1 C3A201_BACMY Putative uncharacterized protein 157 6e-37 C2XQ06.1 C2XQ06_BACCE Putative uncharacterized protein 157 6e-37 >C2PAZ0.1 C2PAZ0_BACCE Putative uncharacterized protein Length = 156 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 73/136 (53%), Positives = 95/136 (69%), Gaps = 4/136 (2%) Query: 22 MLTFEQKLAILDSYPELERRNVSLGRVNYHLEQSRHEKKTVAFHLHPNGNGFVYGGLLRG 81 MLTFE+KL+I++S+PELER+NVSL RVN+H E+SR +KK V +HLHPNGNGFVY ++G Sbjct: 1 MLTFEEKLSIIESFPELERKNVSLKRVNFHFEESRLDKKNVVYHLHPNGNGFVYANFIKG 60 Query: 82 YETDDKGMVNIRDYGEPELRSLLEASIASLSMFIXXXXXXXXXXXXXXXGSLWTNHEGHT 141 Y+TDDKGM+NIR++ E ELRSL+E I LS W N +GH Sbjct: 61 YKTDDKGMINIREFSEEELRSLIEKVIERLSQ----EPEEVVTPMEPAAEEEWKNEDGHI 116 Query: 142 LSLKPEDDLWYLYAGL 157 L+L EDD+W +YAG+ Sbjct: 117 LTLIQEDDMWNVYAGV 132 >B1DFC7.1 B1DFC7_9BACL Putative uncharacterized protein Length = 161 Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 78/162 (48%), Positives = 100/162 (61%), Gaps = 1/162 (0%) Query: 22 MLTFEQKLAILDSYPELERRNVSLGRVNYHLEQSRHEKKTVAFHLHPNGNGFVYGGLLRG 81 MLTF++KLAI++S+PEL R +VSLGRVN+ E S +++K V +HLHPNGNGFVY GLLR Sbjct: 1 MLTFDEKLAIIESFPELTRTDVSLGRVNFQFENSLYDRKNVVYHLHPNGNGFVYAGLLRN 60 Query: 82 YETDDKGMVNIRDYGEPELRSLLEASIASLSMFIXXXXXXXXXXXXXXXGSLWTNHEGHT 141 + DDKGM+NIRDY E +LR+LL SI SLS+ LWTN E + Sbjct: 61 FSQDDKGMINIRDYNELQLRTLLRQSIDSLSV-REEEPAPKPSRNRKKKDQLWTNEENQS 119 Query: 142 LSLKPEDDLWYLYAGLQXXXXXXXXXXXXXXXXXXGFARTQG 183 L++K EDD+WY+Y+GL GF R Q Sbjct: 120 LTVKWEDDMWYVYSGLNLEMAFEAYGEVEEYMKEEGFRREQN 161 >C2SG17.1 C2SG17_BACCE Putative uncharacterized protein Length = 156 Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 4/136 (2%) Query: 22 MLTFEQKLAILDSYPELERRNVSLGRVNYHLEQSRHEKKTVAFHLHPNGNGFVYGGLLRG 81 MLTFE+KL+I++S+PELER+NVSL RVN+H E+SR +KK V +HLHPNGNGFVY ++G Sbjct: 1 MLTFEEKLSIIESFPELERKNVSLKRVNFHFEESRLDKKNVVYHLHPNGNGFVYANFIKG 60 Query: 82 YETDDKGMVNIRDYGEPELRSLLEASIASLSMFIXXXXXXXXXXXXXXXGSLWTNHEGHT 141 Y TDDKGM+NIR++ E ELRSL+E I LS W N +GH Sbjct: 61 YRTDDKGMINIREFSEEELRSLIEKVIERLSQ----EQEEIVAPIEPAAEEEWKNEDGHI 116 Query: 142 LSLKPEDDLWYLYAGL 157 L+L EDD+W +YAG+ Sbjct: 117 LTLIQEDDMWNVYAGV 132 >C3A201.1 C3A201_BACMY Putative uncharacterized protein Length = 156 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 4/136 (2%) Query: 22 MLTFEQKLAILDSYPELERRNVSLGRVNYHLEQSRHEKKTVAFHLHPNGNGFVYGGLLRG 81 MLTFE+KL+I++S+PELER+NVSL RVN+H E+SR +KK V +HLHPNGNGFVY ++G Sbjct: 1 MLTFEEKLSIIESFPELERKNVSLKRVNFHFEESRLDKKNVVYHLHPNGNGFVYANFIKG 60 Query: 82 YETDDKGMVNIRDYGEPELRSLLEASIASLSMFIXXXXXXXXXXXXXXXGSLWTNHEGHT 141 Y TDDKGM+NIR++ E ELRSL+E I LS W N +GH Sbjct: 61 YRTDDKGMINIREFSEEELRSLIEKVIERLSQ----EQEEIVAPMEPAAEEEWRNEDGHI 116 Query: 142 LSLKPEDDLWYLYAGL 157 L+L EDD+W +YAG+ Sbjct: 117 LTLIQEDDMWNVYAGV 132 >C2XQ06.1 C2XQ06_BACCE Putative uncharacterized protein Length = 156 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 73/136 (53%), Positives = 94/136 (69%), Gaps = 4/136 (2%) Query: 22 MLTFEQKLAILDSYPELERRNVSLGRVNYHLEQSRHEKKTVAFHLHPNGNGFVYGGLLRG 81 MLTFE+KL+I++S+PELER+NVSL RVN+H E+SR +KK V +HLHPNGNGFVY ++G Sbjct: 1 MLTFEEKLSIIESFPELERKNVSLKRVNFHFEESRLDKKNVVYHLHPNGNGFVYANFIKG 60 Query: 82 YETDDKGMVNIRDYGEPELRSLLEASIASLSMFIXXXXXXXXXXXXXXXGSLWTNHEGHT 141 Y TDDKGM+NIR++ E ELRSL+E I LS W N +GH Sbjct: 61 YRTDDKGMINIREFSEEELRSLIEKVIERLSQ----EQEEIVAPMEPAAEEEWRNEDGHI 116 Query: 142 LSLKPEDDLWYLYAGL 157 L+L EDD+W +YAG+ Sbjct: 117 LTLIQEDDMWNVYAGV 132 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 893,197,041 Number of extensions: 30611983 Number of successful extensions: 61448 Number of sequences better than 1.0e-05: 90 Number of HSP's gapped: 61357 Number of HSP's successfully gapped: 90 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)