BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0311.0002.p (309 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9R7.1 B3K9R7_9BACI Putative uncharacterized protein 252 3e-65 Q2B4G7.1 Q2B4G7_9BACI Putative uncharacterized protein 109 4e-22 A6CIW5.1 A6CIW5_9BACI Putative uncharacterized protein 94 2e-17 B1YEI9.1 B1YEI9_EXIS2 Putative uncharacterized protein 93 3e-17 Q5WC87.1 Q5WC87_BACSK Putative uncharacterized protein 83 3e-14 >B3K9R7.1 B3K9R7_9BACI Putative uncharacterized protein Length = 293 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 132/301 (43%), Positives = 191/301 (63%), Gaps = 9/301 (2%) Query: 2 LKKWIAVVMGXXXXXXXXXCGNDKNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVE 61 +KKW AV++G CG D E Sbjct: 1 MKKWTAVLLGAILVMSMTACGKDNKAADDAAATPPAAEQGTTTPAETPPAK--------E 52 Query: 62 QASEQGVPTLDELIRKSAEAAKDLKSFGMDSQVSQNMTIKGETAKQQKVEMTTKSELIKE 121 + E+ +PT DEL++KSAEA+K+LKSF M + V Q++ ++G ++Q V+M+ SEL E Sbjct: 53 EPKEEALPTADELLQKSAEASKNLKSFAMKADVKQHIVVEGAEKQEQNVDMSLDSELTLE 112 Query: 122 PLQMHQAVKVDSGQGVQNVEQYITGSGIYSQTGGRWLKIPAEMSKQMTASLE-QSANPEA 180 P++M Q V +DS +G ++QYIT GIY G+W+++P E +++ SL+ SA+PE Sbjct: 113 PVEMMQNVVMDSPEGKVEMKQYITEDGIYMLMDGQWMQVPKESEQEIRDSLDPSSASPEQ 172 Query: 181 QLEQFKTIAKDTKVTEDGNNYLLTADVSGDSVKELAKSYLEQNGGDKSQAALVEQMDIKS 240 Q+EQFKT+AKD KVTEDG+ Y+LTADVSGD++KELAKS + Q G D A+++QMDIKS Sbjct: 173 QVEQFKTLAKDFKVTEDGDAYVLTADVSGDNLKELAKSMMSQAGNDPQMEAMMDQMDIKS 232 Query: 241 MKLVYAVDKKTYLPTRTDVEIMMDMTNDGQSISMDTKMKTTINQHNEISKITVPEEALSA 300 + + Y V K++YLP TD++++M M +GQ +S+D KMK+ ++HNEISKI VP+EAL A Sbjct: 233 IHITYGVQKESYLPVTTDLDMVMAMEAEGQKVSLDMKMKSEYSKHNEISKIEVPKEALEA 292 Query: 301 K 301 K Sbjct: 293 K 293 >Q2B4G7.1 Q2B4G7_9BACI Putative uncharacterized protein Length = 322 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/252 (27%), Positives = 132/252 (52%), Gaps = 8/252 (3%) Query: 61 EQASEQGVPTLDELIRKSAEAAKDLKSFGMDSQVSQNMTIKGETAKQQKVEMTTKSELIK 120 E A + TL+E++ K+ EA+++L SF +D + Q M G+ + + + +++ Sbjct: 72 ETAENESDLTLEEVLDKTTEASENLNSFSVDMTMDQ-MISAGQEEENMNISSDIQMDVVT 130 Query: 121 EPLQMHQ--AVKVDSGQGVQNVEQYITGSGI--YSQTGGRWLKIPAEMSKQMTASLEQSA 176 EP+ +Q A+ D E Y T G+ Y G W+K P EMS Q+ Q Sbjct: 131 EPMAFYQKTAMSQDQSGETYETESYFTEEGMFMYDPAGETWMKFPKEMSDQLIQMSGQQT 190 Query: 177 NPEAQLEQFKTIAKDTKVTEDGNNYLLTADVSGDSVKELAKSYLEQNGGDKSQA--ALVE 234 NP +L++ + D +D N+++L SG+ EL K + + A + Sbjct: 191 NPAEELKKLQEFTDDFTFEQDDNHFILKLKASGEKFTELMKETMADTLPPEMAADEEVFN 250 Query: 235 QMDIKSMKLVYAVDKKTYLPTRTDVEIMMDMTNDGQSISMDTKMKTTINQHNEISKITVP 294 M I+++ VDK+T+ P+ ++++ M+M +GQ++S++ K++ + +NE+ +IT+P Sbjct: 251 NMKIENVDYTILVDKETFYPSSLNMDMTMEMAVEGQTVSLNQKIEGKYSDYNEVKEITIP 310 Query: 295 EEAL-SAKEVQM 305 +E L +A E++M Sbjct: 311 QEVLDTAVEMEM 322 >A6CIW5.1 A6CIW5_9BACI Putative uncharacterized protein Length = 290 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 73/257 (28%), Positives = 140/257 (54%), Gaps = 26/257 (10%) Query: 70 TLDELIRKSAEAAKDLKSFGMDSQVSQNMTIKGETAKQQKVEMTTKS--ELIKEPLQMHQ 127 TL+++ + + +A +L S MD +++Q E ++ + M+T S +L+ EP+ M+Q Sbjct: 37 TLEQVFKNTVQADSELSSVHMDMEINQ--VTHDEANEEGSMNMSTTSSTDLVMEPMTMYQ 94 Query: 128 A----VKVDSGQG----VQNVEQYITGSGIYSQTG--GRWLKIPAEMSKQM-TASLEQSA 176 +++D +G V VE Y+T IY + W K+P EM+ M ++L++S+ Sbjct: 95 TSTVNMQMDEMEGNEIPVAQVEMYLTEEEIYLKDNMQNEWTKLPNEMADLMKDSALQESS 154 Query: 177 NPEAQLEQFKTIAKDTKVTEDGNNYLLTADVSGDSVKELAKSYLEQNGG---DKSQAA-- 231 PE QL+QF+ +D + ++L + G E+ LE+ G +K QA+ Sbjct: 155 LPENQLKQFQPYLDQFTFKQDDDTFILHLSLEGAQADEI----LEEGMGMMNEKLQASFD 210 Query: 232 -LVEQMDIKSMKLVYAVDKKTYLPTRTDVEIMMDMTNDGQSISMDTKMKTTINQHNEISK 290 ++E + I +M+L +DK+++ + +++ ++M +G++++MD MK+ ++ NEI Sbjct: 211 GMMEDISIANMELKMWIDKESFNTVKMELQQNIEMKQNGETLTMDQTMKSEFSKFNEIQA 270 Query: 291 ITVPEEAL-SAKEVQMP 306 I VP E SA E++ P Sbjct: 271 IEVPAEVTESAVEMESP 287 >B1YEI9.1 B1YEI9_EXIS2 Putative uncharacterized protein Length = 269 Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 129/234 (55%), Gaps = 14/234 (5%) Query: 73 ELIRKSAEAAKDLKSFGMDSQVSQNMTIKGETAKQQKVEMTTKSELIKEPLQMHQAVKVD 132 EL++K++ A +++KSF MDS ++ + G QKV +++I++P+ M+Q + + Sbjct: 42 ELLKKASSAQENIKSFHMDSDMTSEI---GGMPMSQKVS----ADIIQKPITMYQKMTMK 94 Query: 133 SGQGVQNV--EQYITGSGIYSQTGGRWL-KIPAEMSKQMTASLEQSANPEAQLEQFKTIA 189 + + +V E Y+ +Y G+WL + AE+ M ++E SA+ E L+ K Sbjct: 95 NAEDGTDVDTELYLVDDKMYISQAGQWLVQDTAELG-DMLKNMETSASTEQSLKLLKKYK 153 Query: 190 KDTKVTEDGNNYLLTADVSGDSVKELAKSYLEQNGGDKSQAALVEQMDIKSMKLVYAVDK 249 + + ++G+ Y + D+ GD +K K LEQ+G +++Q+D K M+ D Sbjct: 154 DNWTMKKEGDVYQIDVDLKGDQLKAFMKDSLEQSGQLAQMKDVMDQVDYKKMEYSMTYDA 213 Query: 250 KTYLPTRTDVEIMMDMTNDGQSISMDTKMKTTINQHNEISKITVPEEALSAKEV 303 KTY P D+E+ ++ +G +M K ++T ++ N+I I +P+EA +A+E+ Sbjct: 214 KTYYPKTLDMEMAFEI-QEGTEFTM--KNESTFSKFNDIKSIELPKEAKNAQEL 264 >Q5WC87.1 Q5WC87_BACSK Putative uncharacterized protein Length = 376 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 125/241 (51%), Gaps = 19/241 (7%) Query: 70 TLDELIRKSAEAAKDLKSFGMDSQVSQNMTIKGETAKQQKVEMTT--KSELIKEPLQMHQ 127 T ++++ K++EA + L SF M+ + M +G Q EM+ +++I+EPL + Sbjct: 98 TAEDVLVKTSEAMEALDSFRMEMSMDYGMEYEG-----QPFEMSIGMTADMIQEPLSAYL 152 Query: 128 AVKV-DSGQGVQ-NVEQYITGSGIYSQT--GGRWLKIPAEMSKQMTASLEQSANPEAQLE 183 + + DS G+ +QY+ Y Q G W+K +MS+ + E + + QL+ Sbjct: 153 STTISDSETGMDFTTDQYMVDDTFYMQNPLGPEWMKY--DMSEDPAFATEMEIDTQEQLD 210 Query: 184 QFKTIAKDTKVTEDGNNYLLTADVSGDSVKELAKSYLE--QNGGDKSQ--AALVEQMDIK 239 K++A+ + E+ +Y+L D S + + L +S++E Q G ++ AL+E +K Sbjct: 211 VLKSVAEHIALEEEEGSYVLKVDGSDEEMNALVQSFMEMGQEGALPTEEDMALMEGFGLK 270 Query: 240 SMKLVYAVDKKTYLPTR--TDVEIMMDMTNDGQSISMDTKMKTTINQHNEISKITVPEEA 297 ++ V+K+TYL + D E+ D N+ +S SM + T ++ NE +I +P+E Sbjct: 271 NVTYTIYVNKETYLQEKMVMDFEMAFDDENESESFSMSGTAEATYSKFNEFDEIDIPQEV 330 Query: 298 L 298 L Sbjct: 331 L 331 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.307 0.122 0.322 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,362,512,352 Number of extensions: 47089488 Number of successful extensions: 139228 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 139206 Number of HSP's successfully gapped: 23 Length of query: 309 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 174 Effective length of database: 1,788,859,178 Effective search space: 311261496972 Effective search space used: 311261496972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 131 (55.1 bits)