BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0309.0006.p (288 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q72ZJ2.1 Q72ZJ2_BACC1 Putative uncharacterized protein 125 5e-27 C3HBI0.1 C3HBI0_BACTU Putative uncharacterized protein 98 9e-19 B3ZY26.1 B3ZY26_BACCE KAP family P-loop domain protein 94 1e-17 B7JTC8.1 B7JTC8_BACC0 KAP family P-loop domain protein 91 2e-16 A1BZ49.1 A1BZ49_BACCE KAP family P-loop domain protein 91 2e-16 >Q72ZJ2.1 Q72ZJ2_BACC1 Putative uncharacterized protein Length = 736 Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 87/280 (31%), Positives = 133/280 (47%), Gaps = 17/280 (6%) Query: 15 SRAYDAGLIRDLKAYRKFLTPISLRPPGLIINFKDLPVNTE--FSKEYMDAEDMRKQIVE 72 S +D + +++ Y L+ ISLR PG+ IN K+ E F K+ +D+++ I + Sbjct: 247 SNGFDPKIEKNIIKYSNALSSISLRLPGITINLKETHSLIEELFGKKSQSIKDIKEAIEK 306 Query: 73 RXXXXXXXXXXXXXXXXXXXNKEIQMVFKLVRMIADFPKTTYIIAMDEEIVTNSLAQMYS 132 +EIQ +F+LVR+I DFP TYI+A+DEEIV ++LA+++ Sbjct: 307 SLETSNKKIVVFIDDIDRLNKEEIQTIFRLVRLICDFPNITYIVALDEEIVASALAELHG 366 Query: 133 KDFVRD---VGKEYLEKFIQIPLYIPACDPVLLANLGWEMLEPIL-------KAEEILVT 182 KD D +G++YLEKFIQIPLYIP D L + W + IL K+E + + Sbjct: 367 KDENGDAKKIGRDYLEKFIQIPLYIPETDVYSLNEMLWAGVREILEENDLMGKSEFLRIE 426 Query: 183 PIQVKDI--LMQMEISPRNLQXXXXXXXXXXXXXHRDVFPXXXXXXXXIKVSKPGLFEFI 240 + + L + E SPRN+ + + IKVS PGL+E I Sbjct: 427 KSSMHRLIDLQKFEFSPRNINRYLNILKFMVPLLKDETYIDDLLYLLFIKVSAPGLYEII 486 Query: 241 LKHSDFFLGKLKEDKMRTELMDKLKAAYAPYVAPLKKMFP 280 S LG + T + + Y+ Y + +FP Sbjct: 487 RVSSSELLGN---NSTNTLVRGGIDTKYSGYEMIINSLFP 523 >C3HBI0.1 C3HBI0_BACTU Putative uncharacterized protein Length = 797 Score = 97.8 bits (242), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 81/280 (28%), Positives = 135/280 (48%), Gaps = 12/280 (4%) Query: 15 SRAYDAGLIRDLKAYRKFLTPISLRPPGLIINFKDLPVNTEFSKEYMDAEDMRKQIVERX 74 ++ Y+ + + +K Y L+ +SLR G II+FK+L + + D++++I Sbjct: 156 TQGYNPEIGKAIKKYADILSSVSLRGFGTIISFKELIDRFKPGQSTDSLSDLKEEIETLL 215 Query: 75 XXXXXXXXXXXXXXXXXXNKEIQMVFKLVRMIADFPKTTYIIAMDEEIVTNSLAQMYS-- 132 EI+M+FKLVR++ADFPK TYI+A+DEE+V SL+ +Y Sbjct: 216 KDYPKRIVVYIDDIDRLEGSEIRMIFKLVRLVADFPKVTYILALDEEVVQKSLSSVYQFE 275 Query: 133 -KDFVRDVGKEYLEKFIQIPLYIPACDPVLLANLGWEMLEPILKAEEILVTPI-QVKDIL 190 K + D K+Y+EKFIQIP+Y+P D + L L + L I++ IL ++ + L Sbjct: 276 EKGNLED-AKKYIEKFIQIPIYLPKPDVIDLYGLCKKQLNKIIEENNILDKSYNEIINDL 334 Query: 191 MQMEISPRNLQXXXXXXXXXXXXXHRDVFPXXXXXXXXIKVSKPGLFEFILKHSDFFLGK 250 +++++S R++ +V I+VS P L+++I + FL Sbjct: 335 IELKLSLRDVSRYFNLVKFYLPFLKEEVNVRDLLYLILIQVSSPELYQYIYTNKLLFL-- 392 Query: 251 LKEDKMRTELMDKLKA--AYAPYVAPLKKMFPSKLTLLCN 288 + + EL D+ K Y L +FP L N Sbjct: 393 ---NDSKFELDDEFKEIPRLNEYKVILCTIFPYASRLFGN 429 >B3ZY26.1 B3ZY26_BACCE KAP family P-loop domain protein Length = 884 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 80/305 (26%), Positives = 134/305 (43%), Gaps = 24/305 (7%) Query: 5 NKLIDSIKEHSRAYDAGLIRDLKAYRKFLTPISLRPPGLIINFKDLPVNTEFSKEYMDAE 64 NKLI I+++ + LI ++K+Y + +T ++LR + +FKD + D + Sbjct: 257 NKLIAEIEKNFSGEKSKLISNIKSYSQMITAVTLRMGVVNFSFKDFFAANKIDN---DIQ 313 Query: 65 DMRKQIVERXXXXXXXXXXXXXXXXXXXNKEIQMVFKLVRMIADFPKTTYIIAMDEEIVT 124 ++ I + + EI VFKLV++IADF TTYI+A DEEIV Sbjct: 314 KLKDIIENQLENEDKKIIVYIDDLDRLDDVEIHSVFKLVKLIADFRHTTYILAFDEEIVA 373 Query: 125 NSLAQMYSKDFVRDVGKEYLEKFIQIPLYIPACDPVLLANLGWEMLEPILKAEEILVTPI 184 N LA YS ++G +LEK IQ+PLY+P + + +E + +L +I ++ Sbjct: 374 NVLATKYSGKKASEIGTSFLEKIIQVPLYLPPAGSENVKKIIFEGFQNVLDENQIFLSDE 433 Query: 185 QVKDI----LMQMEISP---RNLQXXXXXXXXXXXXXHRDVFPXXXXXXXXIKVSKPGLF 237 +V+ M I P R + +V I+V P ++ Sbjct: 434 EVRRFGSIWSMSFGIIPLTIRAAKRHQNSMIFSFPLLKEEVNIVDLFYIEGIRVFYPDVY 493 Query: 238 EFILKHSDFFL------GKLKEDKMRTELMDKLKAAY--------APYVAPLKKMFPSKL 283 +FI +HS+ FL G +E+ + E D L + ++ L ++FP Sbjct: 494 KFIYRHSNAFLNAGNNTGFSRENLIHGEYKDVLNNLFEKVPAIEKGAIISILIELFPRSK 553 Query: 284 TLLCN 288 L+ Sbjct: 554 YLITG 558 >B7JTC8.1 B7JTC8_BACC0 KAP family P-loop domain protein Length = 884 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 3/178 (1%) Query: 5 NKLIDSIKEHSRAYDAGLIRDLKAYRKFLTPISLRPPGLIINFKDLPVNTEFSKEYMDAE 64 NK I I+E+ + LI ++K+Y + +T ++LR + +FKD + + + Sbjct: 257 NKFIAEIEENFSGEKSKLISNIKSYSQMITSVTLRMGVVNFSFKDFLAANKIDDDIQKLK 316 Query: 65 DMRKQIVERXXXXXXXXXXXXXXXXXXXNKEIQMVFKLVRMIADFPKTTYIIAMDEEIVT 124 D+ + +E+ +EI VFKLV++IADF TTYI+A DEEIV Sbjct: 317 DIIENQLEKEDKKIIVYIDDLDRLDD---EEIHSVFKLVKLIADFRHTTYILAFDEEIVE 373 Query: 125 NSLAQMYSKDFVRDVGKEYLEKFIQIPLYIPACDPVLLANLGWEMLEPILKAEEILVT 182 N L+ YS ++G +LEK IQ+PLY+P D + + ++ +LK +I+++ Sbjct: 374 NVLSTKYSGKKASEIGTSFLEKIIQVPLYLPPADSEDIRRIIFQGFVNVLKGNQIVLS 431 >A1BZ49.1 A1BZ49_BACCE KAP family P-loop domain protein Length = 884 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 3/178 (1%) Query: 5 NKLIDSIKEHSRAYDAGLIRDLKAYRKFLTPISLRPPGLIINFKDLPVNTEFSKEYMDAE 64 NK I I+E+ + LI ++K+Y + +T ++LR + +FKD + + + Sbjct: 257 NKFIAEIEENFSGEKSKLISNIKSYSQMITSVTLRMGVVNFSFKDFLAANKIDDDIQKLK 316 Query: 65 DMRKQIVERXXXXXXXXXXXXXXXXXXXNKEIQMVFKLVRMIADFPKTTYIIAMDEEIVT 124 D+ + +E+ +EI VFKLV++IADF TTYI+A DEEIV Sbjct: 317 DIIENQLEKEDKKIIVYIDDLDRLDD---EEIHSVFKLVKLIADFRHTTYILAFDEEIVE 373 Query: 125 NSLAQMYSKDFVRDVGKEYLEKFIQIPLYIPACDPVLLANLGWEMLEPILKAEEILVT 182 N L+ YS ++G +LEK IQ+PLY+P D + + ++ +LK +I+++ Sbjct: 374 NVLSTKYSGKKASEIGTSFLEKIIQVPLYLPPADSEDIRRIIFQGFVNVLKGNQIVLS 431 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.140 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,317,370,919 Number of extensions: 44859778 Number of successful extensions: 94833 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 94850 Number of HSP's successfully gapped: 18 Length of query: 288 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 154 Effective length of database: 1,798,280,193 Effective search space: 276935149722 Effective search space used: 276935149722 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)