BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0309.0005.p (367 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8CX22.1 A8CX22_9CHLR Putative uncharacterized protein (Fragment) 152 4e-35 B5HP73.1 B5HP73_9ACTO Putative uncharacterized protein 148 1e-33 Q2SMP6.1 Q2SMP6_HAHCH Putative uncharacterized protein 135 8e-30 Q0PM09.1 Q0PM09_9ACTO Putative uncharacterized protein 127 1e-27 C4C3J1.1 C4C3J1_9FUSO Putative uncharacterized protein 102 6e-20 >A8CX22.1 A8CX22_9CHLR Putative uncharacterized protein (Fragment) Length = 243 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 123/218 (56%), Gaps = 10/218 (4%) Query: 34 LLALDQNSDLWRIDLHTGRAAMLLHVDIPGLELQEPV--------QIIVSADERFAAVSG 85 LLALD + L IDL +G+A L V++P ++ P ++ SAD FAA+ Sbjct: 26 LLALDASGGLHCIDLRSGQATRLGAVELPAQTIENPGAFGLDSRWRLHASADGEFAALVF 85 Query: 86 RFGQYAALYDLQDFKLIMLLSRGDYHYDVCTFPLAFAEHEGRTLLIHGSEWNRLDLLDVR 145 G+ + DL F++ + L GDY+ + F F +G T+L+H + WNRLD D R Sbjct: 86 DGGRQGLVVDLAPFRVALRLDGGDYYQNTVPFSACFLSFQGDTVLVHRTAWNRLDASDPR 145 Query: 146 SGENMSARQSPSFADGQYPEHSLDYFHGKIHISPQGDWIIDTGWIWHPIASIRSWSLSAW 205 SG ++AR S+ +G+ P H LDYFHG + SP G + D GW+W P + +AW Sbjct: 146 SGRLLTARGPTSYENGERPPHYLDYFHGLLRPSPSGTLLFDAGWVWQPAGVPCVFDAAAW 205 Query: 206 L-SNCWESEDGATLRKLGQLMEDWDQPVVWLDPSTLAV 242 L SN WESEDGA+ R+L L +DW+ P W+D +A+ Sbjct: 206 LASNVWESEDGASKRRL-VLRDDWNLPACWIDDDHIAL 242 >B5HP73.1 B5HP73_9ACTO Putative uncharacterized protein Length = 350 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 36/354 (10%) Query: 10 DLVPNPGKLAAIQAIKGTGKDAVSLLALDQNSDLWRIDLHTGRAAMLLHVDIPGLELQEP 69 ++ PN G +A + ++ + A LAL ++ + R D+ TG + + EP Sbjct: 13 EVPPNLGAIADLTPVRDQERPA--WLALGEDGTISRWDVTTGDHEAVGTTTVWAEPDPEP 70 Query: 70 -------VQIIVSADERFAAVSGRFGQYAALYDLQDFKLIMLLSRGDYHYDVCTFPLAFA 122 ++ S D F AV +G++ + DL+ ++ + L +H D F LAF Sbjct: 71 WNDREIRRRLHASHDGDFCAVVNDYGRFGEVIDLRTGEVTLALENEGHHSDTVPFSLAFG 130 Query: 123 EHEGRTLLIHGSEWNRLDLLDVRSGENMSARQ--SPSFADGQYPEHSLDYFHGKIHISPQ 180 GR ++IH ++WNRLD+ D +G ++ R SP+ DG PEH LDYFHG +++SP Sbjct: 131 RSHGRCVVIHRTDWNRLDVSDAETGALLTDRSFLSPAEEDG-LPEHHLDYFHGALYVSPD 189 Query: 181 GDWIIDTGWIWHPIASIRSWSLSAWL-SNCWESEDGATLRKLGQLMEDWDQPVVWLDPST 239 G I+D GWIWHP+ W L W+ N WESEDG + + WD + W+D + Sbjct: 190 GKRILDDGWIWHPVGVPSVWDLDPWIEGNVWESEDGPSRVDVCGREYYWDHAMTWIDSAR 249 Query: 240 LAVWGQLAIDMYEEEEMKDYGEHLSSHFLAIFDVQTGAQKGLFIPVPAYRTKPLINGSMY 299 +A+ G D+ + IFD ++G+ + + + Sbjct: 250 VAIGGIGDDDLAMRPGAR------------IFDTSRTGERGMAVELLTFEG--------- 288 Query: 300 YPQGQIAAVNGRVVMWGPENGLSILNPDTGETEFSDEKLCPDFYHPYANVFLEI 353 P G+ + R+ G + GLS +P G + P +HP FLE+ Sbjct: 289 -PAGRFFSDGTRLFSSG-DTGLSTWDPAEGNLLGAVPGFSPTHHHPSTGQFLEL 340 >Q2SMP6.1 Q2SMP6_HAHCH Putative uncharacterized protein Length = 432 Score = 135 bits (339), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 87/315 (27%), Positives = 149/315 (47%), Gaps = 31/315 (9%) Query: 17 KLAAIQAIKGTGKDAVSLLALDQNSDLWRIDLHTGRAAMLLHVDIPGLELQEPVQIIVSA 76 +L A++ +K DA + + LWR++L G + + + + + + + +S Sbjct: 101 RLLALEPLKSHPTDA---MLFTDDGGLWRVNLQNGESVQVATLPVEQIHPAGAITLKISP 157 Query: 77 DERFAAVSGRFGQYA--------ALYDLQDFKLIMLLSRGDYHYDVCTFPLAFAEHEGRT 128 D +F A++ ++A + +L +++M L GDYH + FP+AF EH+G+T Sbjct: 158 DNQFLAITSLLYRHADEGSSNKGLVLNLSSGEVLMQLDAGDYHMEEADFPVAFFEHDGKT 217 Query: 129 LLIHGSEWNRLDLLDVRSGENMSARQSPSFADGQYPEHSLDYFHGKIHISPQGDWIIDTG 188 LL+ ++WN+LD+ D R+GE ++ R S + + + + G + ISP G I G Sbjct: 218 LLVRATDWNQLDIFDPRTGECLTQRHSDTPPEHDEDATFMSEWSGALAISPNGQRIATIG 277 Query: 189 WIWHPIASIRSWSLSAWLS-NCWESEDGATLRKLGQLMEDWDQPVVWLDPSTLAVWGQLA 247 W+WHP+ SW L WL+ N WE + G + W P W+D + +WG Sbjct: 278 WVWHPVGVAYSWDLQHWLNHNAWEPDIGESKVMYASWDYFWSSPFFWIDEDRICIWGC-- 335 Query: 248 IDMYEEEEMKDYGEHLSSHFLAIFDVQTGAQKGLFIPVPAYRTKPLINGSMYYPQGQIAA 307 ++ DY L+S AIFD ++G Q F P +N + YY Q + Sbjct: 336 -----QDLHTDYDVPLAS--AAIFDAKSGDQIKWF-------AGPTMN-AFYYDQYLFST 380 Query: 308 VNG--RVVMWGPENG 320 + +W E+G Sbjct: 381 TEKGDAITIWDLESG 395 >Q0PM09.1 Q0PM09_9ACTO Putative uncharacterized protein Length = 354 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 3/166 (1%) Query: 79 RFAAVSGRFGQYAALYDLQDFKLIMLLSRGDYHYDVCTFPLAFAEHEGRTLLIHGSEWNR 138 R+AAV G+Y + DL + L GD+ + F LAFAEH GR +++H ++WNR Sbjct: 83 RWAAVVQDRGRYGTVVDLTTGSTALTLDGGDHCCETVPFALAFAEHGGRAVVVHRTDWNR 142 Query: 139 LDLLDVRSGENMSARQSPSFADGQYPEHSLDYFHGKIHISPQGDWIIDTGWIWHPIASIR 198 LD+ D+ SGE ++AR P D E+ LDYFHG + +SP G + + GW+W P Sbjct: 143 LDVTDLASGEVLTARDGPD-GDEDDAEYGLDYFHGALALSPDGTRVYNGGWVWQPWGMPA 201 Query: 199 SWSLSAWL-SNCWESEDGATLRKLGQLMEDWDQPVVWLDPSTLAVW 243 WSL+AWL N +ESE G + ++ E W++P VW+D +AV+ Sbjct: 202 VWSLTAWLHDNPYESEGGPSYAVYPEISE-WNRPAVWIDDGRIAVY 246 >C4C3J1.1 C4C3J1_9FUSO Putative uncharacterized protein Length = 373 Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 19/177 (10%) Query: 80 FAAVSGRFGQYAALYDLQDFKLIMLLSRGDYHYDVCTFPLAFAEHEGRTLLIHGSEWNRL 139 + +S ++G A++ +++ K I SR DYH DV + F E +G+ LLIH ++WNRL Sbjct: 64 YICISEKYGLNASVINIETGK-IQKFSREDYHADVSVYSTGFIERDGKILLIHQTQWNRL 122 Query: 140 DLLDVRSGENMSAR-------------QSPSFADGQYP-EHSLDYFHGKIHISPQGDWII 185 D+ D+ SGE ++ R ++ G+ E+ LDYFH +HISP G + Sbjct: 123 DITDLESGEILTKRDIKIELTPDKHNKKTGEIIKGKRKSENYLDYFHSSLHISPDGKNFL 182 Query: 186 DTGWIWHPIASIRSWSLSAWLSNCWESEDGATLRKLGQLMEDWDQPVVWLDPSTLAV 242 GW+W P+ +IR +++ + S G +WD+P ++D T + Sbjct: 183 SNGWVWSPVDNIRCFNVREFFSKYELCSFGIEYAN----GYNWDRPCTFIDNDTFVI 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,487,036,689 Number of extensions: 111183654 Number of successful extensions: 222105 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 222092 Number of HSP's successfully gapped: 10 Length of query: 367 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 230 Effective length of database: 1,770,017,148 Effective search space: 407103944040 Effective search space used: 407103944040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)