BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0309.0004.p
         (199 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DI18.1 B1DI18_9BACL GCN5-related N-acetyltransferase                140   9e-32

>B1DI18.1 B1DI18_9BACL GCN5-related N-acetyltransferase
          Length = 185

 Score =  140 bits (352), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 5/185 (2%)

Query: 13  FKTYDKWDDALWAAMEPLYREAFP-HGAKPVGILHAMLDKQIAWLHTGYQDGKLAAMAVT 71
           F T ++ D  +W   + LY ++FP  G KP  I++ M  +   +LHT   +G++ AMA++
Sbjct: 3   FTTLNELDITVWPLAKKLYEQSFPKEGRKPDAIINGMFRRMPCYLHTLTDEGRVEAMALS 62

Query: 72  GLSGPAGERMLIIDYMAVDAXXXXXXXXXXFLELIRDWAVQKYDIQAVLIEVEAGHTEED 131
           GL+G  G ++L+IDY+AV             +E I DWA +   +  +LIEVE+ H   +
Sbjct: 63  GLTG--GGKILLIDYIAVSGQRRGEGIGSQLIEAIADWAQKVMLLDGLLIEVESEHAPAN 120

Query: 132 AARVHFWEHCGCIATEYVHQYIWIPEPYRAMVMPLTRDFAITDD--GQALFRRITDFHRK 189
             R+ FWE  G   T+Y H YIW+PEPYRAM  PL+++ A   D  G+ LFR IT FH K
Sbjct: 121 ERRIRFWERNGFKITDYEHPYIWVPEPYRAMYKPLSKEKAWLGDGSGKQLFRYITAFHEK 180

Query: 190 SFRKS 194
           ++ K 
Sbjct: 181 AYSKK 185


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.325    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,188,446,660
Number of extensions: 43863948
Number of successful extensions: 103022
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 103019
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 70
Effective length of database: 1,845,385,268
Effective search space: 129176968760
Effective search space used: 129176968760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)