BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0309.0001.p
         (111 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3ZY26.1 B3ZY26_BACCE KAP family P-loop domain protein                 76   8e-13
B7JTC8.1 B7JTC8_BACC0 KAP family P-loop domain protein                 71   3e-11
A1BZ49.1 A1BZ49_BACCE KAP family P-loop domain protein                 71   3e-11
C2QDW0.1 C2QDW0_BACCE KAP family P-loop domain protein                 70   8e-11
Q72ZJ2.1 Q72ZJ2_BACC1 Putative uncharacterized protein                 69   1e-10

>B3ZY26.1 B3ZY26_BACCE KAP family P-loop domain protein
          Length = 884

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 65/99 (65%), Gaps = 5/99 (5%)

Query: 12  LNFRTESSLGKEGRDALNREAFAGHVAATIEKHTAKTNEGALTIGLYGPWGSGKTSIFDL 71
           L+FRT++++  +G D L R+ F   + A +  ++ K  E ++ IGLYG WG+GKTS+ +L
Sbjct: 168 LSFRTDNAIKTDGEDDLERDVFVNRIVAGV--NSWKETE-SIVIGLYGEWGTGKTSVLNL 224

Query: 72  MEREFDKSKSNPVIVRFQPWFFGKDYMNLIPEFXXXXIS 110
           M+ +F++ K+N VI+ F PW+F KD   LI +F    I+
Sbjct: 225 MKNKFEEDKNN-VIISFNPWYF-KDEEQLILQFFNKLIA 261


>B7JTC8.1 B7JTC8_BACC0 KAP family P-loop domain protein
          Length = 884

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 4   NNSTTQHELNFRTESSLGKEGRDALNREAFAGHVAATIEKHTAKTNEGALTIGLYGPWGS 63
           N+      L+F  ++++  EG D L R  F   +   I     K    ++ IGLYG WG+
Sbjct: 160 NSKVDSENLSFLADNAIKMEGEDELERTGFVNGLVTRISSWKEKE---SIVIGLYGEWGT 216

Query: 64  GKTSIFDLMEREFDKSKSNPVIVRFQPWFFGKDYMNLIPEFXXXXIS 110
           GKTS+ +LM+ +F++ K+N VI+ F PW+F KD   LI +F    I+
Sbjct: 217 GKTSVLNLMKNKFEEDKNN-VIISFNPWYF-KDEEQLILQFFNKFIA 261


>A1BZ49.1 A1BZ49_BACCE KAP family P-loop domain protein
          Length = 884

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 5/107 (4%)

Query: 4   NNSTTQHELNFRTESSLGKEGRDALNREAFAGHVAATIEKHTAKTNEGALTIGLYGPWGS 63
           N+      L+F  ++++  EG D L R  F   +   I     K    ++ IGLYG WG+
Sbjct: 160 NSKVDSENLSFLADNAIKMEGEDELERTGFVNGLVTRISSWKEKE---SIVIGLYGEWGT 216

Query: 64  GKTSIFDLMEREFDKSKSNPVIVRFQPWFFGKDYMNLIPEFXXXXIS 110
           GKTS+ +LM+ +F++ K+N VI+ F PW+F KD   LI +F    I+
Sbjct: 217 GKTSVLNLMKNKFEEDKNN-VIISFNPWYF-KDEEQLILQFFNKFIA 261


>C2QDW0.1 C2QDW0_BACCE KAP family P-loop domain protein
          Length = 884

 Score = 69.7 bits (169), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 4   NNSTTQHELNFRTESSLGKEGRDALNREAFAGHVAATIEKHTAKTNEGALTIGLYGPWGS 63
           N+      L+F  ++++  EG D L R    G V   + + ++     ++ IGLYG WG+
Sbjct: 160 NSKVDSENLSFLADNAIKMEGEDELER---TGFVNGLVTRISSWKETESIVIGLYGEWGT 216

Query: 64  GKTSIFDLMEREFDKSKSNPVIVRFQPWFFGKDYMNLIPEF 104
           GKTS+ +LM+ +F++ K+N VI+ F PW+F KD   LI +F
Sbjct: 217 GKTSVLNLMKTKFEEDKNN-VIISFNPWYF-KDEEQLILQF 255


>Q72ZJ2.1 Q72ZJ2_BACC1 Putative uncharacterized protein
          Length = 736

 Score = 68.9 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 6/99 (6%)

Query: 14  FRTESSLGKEGRDALNREAFAGHVAATIEKHTAKTNEGALTIGLYGPWGSGKTSIFDLME 73
           F +++ +     D L+RE F  HV +++ K     N   LTIG YG WG+GKTSIF +++
Sbjct: 148 FYSDNPVINNKDDRLHREKFVDHVISSLNK----INGENLTIGFYGKWGTGKTSIFKMIK 203

Query: 74  REFD--KSKSNPVIVRFQPWFFGKDYMNLIPEFXXXXIS 110
            + +   +K   +I  F+PW+FGK+   +I EF    +S
Sbjct: 204 EKIEDGNNKDEYLIFEFKPWYFGKEDHEIIVEFLEQLLS 242


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 632,643,977
Number of extensions: 23192219
Number of successful extensions: 117854
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 117878
Number of HSP's successfully gapped: 20
Length of query: 111
Length of database: 3,060,696,203
Length adjustment: 78
Effective length of query: 33
Effective length of database: 2,325,857,033
Effective search space: 76753282089
Effective search space used: 76753282089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)