BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0308.0002.p (326 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZI33.1 C0ZI33_BREBN Putative uncharacterized protein 643 0.0 B3K932.1 B3K932_9BACI Putative uncharacterized protein 574 e-162 C4RHA2.1 C4RHA2_9ACTO Putative uncharacterized protein 355 3e-96 B0SRH0.1 B0SRH0_LEPBP Putative uncharacterized protein 344 7e-93 B0SHV0.1 B0SHV0_LEPBA Putative uncharacterized protein 344 7e-93 >C0ZI33.1 C0ZI33_BREBN Putative uncharacterized protein Length = 326 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/326 (94%), Positives = 314/326 (96%) Query: 1 MVKFIEGFIPYQGEHCETTAVGNLMQYAGVRLSEPMLFGLGQGLGFIYWDSKGMDFPFIG 60 MVKFIEGFIPYQGEHCETTA+GNL+QYAGV LSEPMLFGLGQGLGFIYWDSKGMDFPFIG Sbjct: 1 MVKFIEGFIPYQGEHCETTAMGNLLQYAGVHLSEPMLFGLGQGLGFIYWDSKGMDFPFIG 60 Query: 61 GRVKPDKLTAHLAERLGLNVRYQETSSVNKAWQNVRSSIEHGIPVGLKLDAYYLDYFKNK 120 GR+KPDKLTA+LAERLGLNVRYQETSSVNKAWQNVRSSIEHGIPVGLKLD+YYLDYF NK Sbjct: 61 GRIKPDKLTAYLAERLGLNVRYQETSSVNKAWQNVRSSIEHGIPVGLKLDSYYLDYFTNK 120 Query: 121 VHFAGHYAVLYGIDDEYAYMADTRQQGGLVKTRLTSLAAARNAKGPMSSRNRSFTIESND 180 VHFAGHYAVLYGIDDEYAY+ADTRQQGGLVKT LTSLAAARNAKGPMSSRNRSFTIE ND Sbjct: 121 VHFAGHYAVLYGIDDEYAYLADTRQQGGLVKTSLTSLAAARNAKGPMSSRNRSFTIEPND 180 Query: 181 VLLPLDPAIRESLTMNAHDYLNPPIGNIGNKGIVKMSNEILKWPSRSNNFEHDLCLTATL 240 LLPL AIRESLTMNA DYLNPPI NIGN+GIVKMSNEILKWPSRSNNFEHDLCLTA L Sbjct: 181 ALLPLVSAIRESLTMNAQDYLNPPIQNIGNRGIVKMSNEILKWPSRSNNFEHDLCLTAML 240 Query: 241 MERAGTGGALFRNLYRDYLRECADRLEDPRIEQAHSMFTEIAPMWVSVSASIDHAGRTGE 300 MERAGTGGALFRNLYRDYLRECADRLEDPRIEQAH MFTEIAPMWVSVSASIDHAGRTGE Sbjct: 241 MERAGTGGALFRNLYRDYLRECADRLEDPRIEQAHCMFTEIAPMWVSVSASIDHAGRTGE 300 Query: 301 HQELVRASKLLLEIADKERAAMELLL 326 HQELV ASKLLLEIADKERAAMELLL Sbjct: 301 HQELVHASKLLLEIADKERAAMELLL 326 >B3K932.1 B3K932_9BACI Putative uncharacterized protein Length = 326 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 275/326 (84%), Positives = 295/326 (90%) Query: 1 MVKFIEGFIPYQGEHCETTAVGNLMQYAGVRLSEPMLFGLGQGLGFIYWDSKGMDFPFIG 60 M IEGF+PYQG+HCETT +GNLMQ+AG RLSEPMLFGLGQGLGFIYWDSKGMDFPFIG Sbjct: 1 MTTNIEGFVPYQGDHCETTTMGNLMQHAGARLSEPMLFGLGQGLGFIYWDSKGMDFPFIG 60 Query: 61 GRVKPDKLTAHLAERLGLNVRYQETSSVNKAWQNVRSSIEHGIPVGLKLDAYYLDYFKNK 120 GRVK DKLTA+LA+RLGL V QETSSV+KAW+NVRS IE GIPVGLKLD+YYLDYF NK Sbjct: 61 GRVKVDKLTANLADRLGLTVNVQETSSVDKAWRNVRSCIERGIPVGLKLDSYYLDYFTNK 120 Query: 121 VHFAGHYAVLYGIDDEYAYMADTRQQGGLVKTRLTSLAAARNAKGPMSSRNRSFTIESND 180 VHFAGHYAVLYG+DDEYAYMADTRQQGGLVKTRLTSLAAARNAKG MSSRNRSFT+E D Sbjct: 121 VHFAGHYAVLYGVDDEYAYMADTRQQGGLVKTRLTSLAAARNAKGAMSSRNRSFTLEPID 180 Query: 181 VLLPLDPAIRESLTMNAHDYLNPPIGNIGNKGIVKMSNEILKWPSRSNNFEHDLCLTATL 240 L PL PA+R SLT NAHDYLNPPI NIGNKGIVKMS EILKWPSRSN+FEHDLCLTA L Sbjct: 181 ALPPLVPALRASLTKNAHDYLNPPIRNIGNKGIVKMSKEILKWPSRSNHFEHDLCLTALL 240 Query: 241 MERAGTGGALFRNLYRDYLRECADRLEDPRIEQAHSMFTEIAPMWVSVSASIDHAGRTGE 300 MERAGTGGALFRNLYRDYL+ECADRLED RI+QA+ +FTEIAPMW SVSASID AGR+G Sbjct: 241 MERAGTGGALFRNLYRDYLKECADRLEDSRIQQAYLLFTEIAPMWTSVSASIDRAGRSGN 300 Query: 301 HQELVRASKLLLEIADKERAAMELLL 326 QEL +AS LLLEIADKERAAM+LLL Sbjct: 301 TQELQQASDLLLEIADKERAAMKLLL 326 >C4RHA2.1 C4RHA2_9ACTO Putative uncharacterized protein Length = 324 Score = 355 bits (911), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 164/313 (52%), Positives = 221/313 (70%) Query: 13 GEHCETTAVGNLMQYAGVRLSEPMLFGLGQGLGFIYWDSKGMDFPFIGGRVKPDKLTAHL 72 G+HCETTA+G L+++ G+ LSEPM FGLG+GLGF+YWD+K M FPF+GGR KP +T L Sbjct: 6 GQHCETTALGVLLRHEGIDLSEPMRFGLGEGLGFVYWDAKNMGFPFLGGRTKPMTITRTL 65 Query: 73 AERLGLNVRYQETSSVNKAWQNVRSSIEHGIPVGLKLDAYYLDYFKNKVHFAGHYAVLYG 132 A RLGL +R +ET+SV KAW NV ++I+ G PVGL+LD+Y+LDYF KVHF GH +YG Sbjct: 66 AARLGLTMRVEETTSVRKAWHNVAAAIDAGRPVGLQLDSYHLDYFTVKVHFGGHVVAMYG 125 Query: 133 IDDEYAYMADTRQQGGLVKTRLTSLAAARNAKGPMSSRNRSFTIESNDVLLPLDPAIRES 192 DD +AY+ DT QQGG V T SL ARN +GPM++RN S+T+ L + + Sbjct: 126 YDDTHAYLVDTAQQGGAVTTTRASLELARNVRGPMTARNLSYTLACGGDRPKLGEVVGAA 185 Query: 193 LTMNAHDYLNPPIGNIGNKGIVKMSNEILKWPSRSNNFEHDLCLTATLMERAGTGGALFR 252 + NAHD+LNPPI N+G++GI K + ++ KW +RS + HDL L A+LMER GTGGALFR Sbjct: 186 IRSNAHDFLNPPIANLGHRGIRKAAGQVPKWLTRSADPRHDLALAASLMERGGTGGALFR 245 Query: 253 NLYRDYLRECADRLEDPRIEQAHSMFTEIAPMWVSVSASIDHAGRTGEHQELVRASKLLL 312 +YRD+L EC ++D + + H M+ EIAP+W VS + A T +H+ LV AS +L Sbjct: 246 AMYRDFLAECCTIVDDDNLRRGHQMYREIAPLWTEVSRHLAAAAETTDHRHLVDASAVLS 305 Query: 313 EIADKERAAMELL 325 ++AD+E AM+ L Sbjct: 306 DLADREHDAMQTL 318 >B0SRH0.1 B0SRH0_LEPBP Putative uncharacterized protein Length = 333 Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 162/322 (50%), Positives = 217/322 (67%) Query: 5 IEGFIPYQGEHCETTAVGNLMQYAGVRLSEPMLFGLGQGLGFIYWDSKGMDFPFIGGRVK 64 IE P+ G+HCETTA G L++ + LSEPMLFGLG+GLGFI+W+ K M+FPFIGGR+K Sbjct: 10 IENLKPFDGQHCETTATGTLLRQLNIDLSEPMLFGLGEGLGFIFWNMKTMNFPFIGGRIK 69 Query: 65 PDKLTAHLAERLGLNVRYQETSSVNKAWQNVRSSIEHGIPVGLKLDAYYLDYFKNKVHFA 124 PD LT ++ + L L + ETSS KAW NV+ + G VGLKLD Y+L+YF +HFA Sbjct: 70 PDLLTQNIIKNLNLELISNETSSKQKAWDNVKQLLNKGKVVGLKLDCYHLEYFSKPIHFA 129 Query: 125 GHYAVLYGIDDEYAYMADTRQQGGLVKTRLTSLAAARNAKGPMSSRNRSFTIESNDVLLP 184 GHY +YG D EYA++ DT+QQGG VKT L SL AR+ KGPM+S+N + I + Sbjct: 130 GHYTAIYGYDKEYAFLVDTKQQGGQVKTSLKSLELARSEKGPMASKNLYYIINKTNKKFD 189 Query: 185 LDPAIRESLTMNAHDYLNPPIGNIGNKGIVKMSNEILKWPSRSNNFEHDLCLTATLMERA 244 L I ++ NA DYLNPPI NIG KGI+K S EI KW +N D +A LM++A Sbjct: 190 LKKVIPTAIRNNAIDYLNPPINNIGYKGILKTSKEISKWFETTNEITGDFSTSAMLMQKA 249 Query: 245 GTGGALFRNLYRDYLRECADRLEDPRIEQAHSMFTEIAPMWVSVSASIDHAGRTGEHQEL 304 GTGGALFRNLYRD+L+E + L+ + QAH F EIA +W VS ++ E +++ Sbjct: 250 GTGGALFRNLYRDFLQESYELLKLGTLAQAHKEFIEIANLWTDVSNLFLKVSKSKEKKDI 309 Query: 305 VRASKLLLEIADKERAAMELLL 326 V+AS++L ++++KE+ ME L+ Sbjct: 310 VQASEILKQLSEKEKEVMEKLV 331 >B0SHV0.1 B0SHV0_LEPBA Putative uncharacterized protein Length = 333 Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 162/322 (50%), Positives = 217/322 (67%) Query: 5 IEGFIPYQGEHCETTAVGNLMQYAGVRLSEPMLFGLGQGLGFIYWDSKGMDFPFIGGRVK 64 IE P+ G+HCETTA G L++ + LSEPMLFGLG+GLGFI+W+ K M+FPFIGGR+K Sbjct: 10 IENLKPFDGQHCETTATGTLLRQLNIDLSEPMLFGLGEGLGFIFWNMKTMNFPFIGGRIK 69 Query: 65 PDKLTAHLAERLGLNVRYQETSSVNKAWQNVRSSIEHGIPVGLKLDAYYLDYFKNKVHFA 124 PD LT ++ + L L + ETSS KAW NV+ + G VGLKLD Y+L+YF +HFA Sbjct: 70 PDLLTQNIIKNLNLELISNETSSKQKAWDNVKQLLNKGKVVGLKLDCYHLEYFSKPIHFA 129 Query: 125 GHYAVLYGIDDEYAYMADTRQQGGLVKTRLTSLAAARNAKGPMSSRNRSFTIESNDVLLP 184 GHY +YG D EYA++ DT+QQGG VKT L SL AR+ KGPM+S+N + I + Sbjct: 130 GHYTAIYGYDKEYAFLVDTKQQGGQVKTSLKSLELARSEKGPMASKNLYYIINKTNKKFD 189 Query: 185 LDPAIRESLTMNAHDYLNPPIGNIGNKGIVKMSNEILKWPSRSNNFEHDLCLTATLMERA 244 L I ++ NA DYLNPPI NIG KGI+K S EI KW +N D +A LM++A Sbjct: 190 LKKVIPTAIRNNAIDYLNPPINNIGYKGILKTSKEISKWFETTNEITGDFSTSAMLMQKA 249 Query: 245 GTGGALFRNLYRDYLRECADRLEDPRIEQAHSMFTEIAPMWVSVSASIDHAGRTGEHQEL 304 GTGGALFRNLYRD+L+E + L+ + QAH F EIA +W VS ++ E +++ Sbjct: 250 GTGGALFRNLYRDFLQESYELLKLGTLAQAHKEFIEIANLWTDVSNLFLKVSKSKEKKDI 309 Query: 305 VRASKLLLEIADKERAAMELLL 326 V+AS++L ++++KE+ ME L+ Sbjct: 310 VQASEILKQLSEKEKEVMEKLV 331 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,919,780,681 Number of extensions: 78537476 Number of successful extensions: 162659 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 162560 Number of HSP's successfully gapped: 70 Length of query: 326 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 190 Effective length of database: 1,779,438,163 Effective search space: 338093250970 Effective search space used: 338093250970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)